Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012480

Physical Location & Seq

Genomic Coordinates Forward (+)

4838240 .. 4840375

Gene Structure 2136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTATTACTGCCTCTCTACGCTTCCCCACTTTGCAACTATACGGCCCAAACCCACGTCTCTCTCTCCACATCGAGCTCTCCCCATCAGAGCCATGAGAGCCGTCGTCCAGCGAGTCGCCTCCGCCAGCGTCGAGGTGGAAGGCCGCACCGTCTCGGCCATTGGGCCGGGTCTTCTCGTCCTTGTCGGGCTTCACGAGTCCGATACCGTCTCCGATGCCGAGTACATATGCCGGAAGGTGTTGAATATGCGGCTGTTCACAAATGAGAGTAGTGGCAGAGGATGGGACCAAAACGTAATGCAGAGGAACTATGAAGTCTTACTAGTGAGTCAATTTACATTGTATGGAACCTTGAAGGGTAACAAGCCTGATTTTCATGTGGCCATGGCGCCGGATAAAGCAAAGCCCTTTTATGCTTCGCTGGTTGAGAGCTTTAGAAAATCCTACAAGCCGGATGCAATAAAAGATGGTGTGTTTGGAGCAATGATGAAGGTAAATCTGGTAAATGATGGACCAGTTACAATGCAATTCGACTCACCATCCCCTAAGAACTCAAATGGTGTCATTGAAGAATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002161 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006450 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009987 GO:0016054 GO:0016070 GO:0016787 GO:0016788 GO:0019478 GO:0019752 GO:0034641 GO:0034660 GO:0043170 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0046395 GO:0046416 GO:0046483 GO:0051499 GO:0051500 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0106074 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tyr_Deacylase

Protein Analysis

193

Amino Acids

21.21

Weight (kDa)

9.08

Isoelectric Point (pI)

29.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tyr_Deacylase	PF02580	33 - 178	5e-53	D-Tyr-tRNA(Tyr) deacylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18460 AT4G18460
fragaria_vesca	FvH4_3g08260 FvH4_3g08260 FvH4_3g08260
malus_domestica	MD10G1285600.v1.1
prunus_persica	Prupe.4G056000_v2.0.a1
pyrus_communis	pycom10g23870
rosa_chinensis	RchiOBHm_Chr5g0009821
rosa_laevigata	RLG00000031703
rosa_multiflora	Rmu_co8266315.1_g000001 Rmu_sc0008691.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066370
rosa_rugosa	Rorug04G0446100
rosa_samantha	Rh5AG077600 Rh5BG072700 Rh5CG085100 Rh5DG073200
rosa_wichuraiana	Rw5G007150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	388
AciI	CCGC	3 cut(s)	123, 145, 250
AcoI	YGGCCR	2 cut(s)	156, 381
AcyI	GRCGYC	1 cut(s)	389
AfaI	GTAC	1 cut(s)	224
AgsI	TTSAA	3 cut(s)	244, 355, 569
AhlI	ACTAGT	1 cut(s)	322
AjiI	CACGTC	1 cut(s)	57
AluBI	AGCT	2 cut(s)	77, 432
AluI	AGCT	2 cut(s)	77, 432
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	3 cut(s)	63, 157, 214
AoxI	GGCC	5 cut(s)	44, 142, 156, 164, 381
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	4 cut(s)	45, 164, 286, 512
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	528
AvaII	GGWCC	2 cut(s)	286, 512
BalI	TGGCCA	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	388
BanII	GRGCYC	1 cut(s)	79
BauI	CACGAG	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	79
BccI	CCATC	5 cut(s)	92, 276, 461, 503, 547
BceAI	ACGGC	2 cut(s)	59, 86
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	3 cut(s)	63, 157, 214
BcuI	ACTAGT	1 cut(s)	322
BfaI	CTAG	1 cut(s)	323
BfoI	RGCGCY	1 cut(s)	392
BisI	GCNGC	2 cut(s)	145, 251
BlsI	GCNGC	2 cut(s)	146, 252
Bme1390I	CCNGG	1 cut(s)	168
Bme18I	GGWCC	2 cut(s)	286, 512
BmgBI	CACGTC	1 cut(s)	57
BmgT120I	GGNCC	4 cut(s)	45, 164, 286, 512
BmiI	GGNNCC	3 cut(s)	287, 349, 390
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	2 cut(s)	205, 445
BpiI	GAAGAC	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	384
Bse1I	ACTGG	1 cut(s)	515
Bse3DI	GCAATG	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	3 cut(s)	287, 460, 539
BseMI	GCAATG	1 cut(s)	489
BseNI	ACTGG	1 cut(s)	515
BshFI	GGCC	5 cut(s)	46, 144, 158, 166, 383
BshNI	GGYRCC	1 cut(s)	388
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	4 cut(s)	167, 232, 392, 452
BslFI	GGGAC	1 cut(s)	299
BsmAI	GTCTC	3 cut(s)	63, 157, 214
BsmBI	CGTCTC	3 cut(s)	63, 157, 214
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	5 cut(s)	46, 144, 158, 166, 383
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp19I	CCATGG	1 cut(s)	384
BspACI	CCGC	3 cut(s)	123, 145, 250
BspANI	GGCC	5 cut(s)	46, 144, 158, 166, 383
BspLI	GGNNCC	3 cut(s)	287, 349, 390
BspT107I	GGYRCC	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	489
BsrI	ACTGG	1 cut(s)	515
BssECI	CCNNGG	1 cut(s)	384
BssNI	GRCGYC	1 cut(s)	389
BssSI	CACGAG	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	384
Bst2BI	CACGAG	1 cut(s)	194
Bst4CI	ACNGT	2 cut(s)	151, 208
BstACI	GRCGYC	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	546
BstDSI	CCRYGG	1 cut(s)	384
BstF5I	GGATG	3 cut(s)	287, 460, 539
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	391
BstMAI	GTCTC	3 cut(s)	63, 157, 214
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	164
BsuRI	GGCC	5 cut(s)	46, 144, 158, 166, 383
BtgI	CCRYGG	1 cut(s)	384
BtrI	CACGTC	1 cut(s)	57
BtsCI	GGATG	3 cut(s)	287, 460, 539
Cac8I	GCNNGC	1 cut(s)	127
CfoI	GCGC	1 cut(s)	391
Cfr13I	GGNCC	4 cut(s)	45, 164, 286, 512
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	3 cut(s)	94, 377, 385
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	546
DinI	GGCGCC	1 cut(s)	390
EaeI	YGGCCR	2 cut(s)	156, 381
EciI	GGCGGA	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	2 cut(s)	286, 512
Eco53kI	GAGCTC	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	384
EcoT38I	GRGCYC	1 cut(s)	79
EgeI	GGCGCC	1 cut(s)	390
EheI	GGCGCC	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	384
Esp3I	CGTCTC	3 cut(s)	63, 157, 214
FaeI	CATG	3 cut(s)	97, 380, 388
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	3 cut(s)	93, 376, 384
FauNDI	CATATG	1 cut(s)	227
Fnu4HI	GCNGC	2 cut(s)	145, 251
FokI	GGATG	3 cut(s)	294, 467, 526
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	2 cut(s)	145, 251
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	2 cut(s)	145, 251
HaeII	RGCGCY	1 cut(s)	392
HaeIII	GGCC	5 cut(s)	46, 144, 158, 166, 383
HapII	CCGG	4 cut(s)	167, 232, 392, 452
HgaI	GACGC	1 cut(s)	118
HhaI	GCGC	1 cut(s)	391
Hin1I	GRCGYC	1 cut(s)	389
Hin1II	CATG	3 cut(s)	97, 380, 388
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HinfI	GANTC	5 cut(s)	114, 197, 328, 533, 572
HpaII	CCGG	4 cut(s)	167, 232, 392, 452
HphI	GGTGA	1 cut(s)	528
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	3 cut(s)	89, 202, 214
Hpy188III	TCNNGA	2 cut(s)	194, 576
Hpy8I	GTNNAC	1 cut(s)	258
Hpy99I	CGWCG	2 cut(s)	107, 134
HpyAV	CCTTC	4 cut(s)	134, 229, 349, 484
HpyCH4III	ACNGT	2 cut(s)	151, 208
HpyCH4IV	ACGT	2 cut(s)	56, 294
HpyCH4V	TGCA	4 cut(s)	35, 301, 458, 526
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	546
HpySE526I	ACGT	2 cut(s)	56, 294
Hsp92I	GRCGYC	1 cut(s)	389
Hsp92II	CATG	3 cut(s)	97, 380, 388
HspAI	GCGC	1 cut(s)	389
KasI	GGCGCC	1 cut(s)	388
LmnI	GCTCC	1 cut(s)	479
LweI	GCATC	2 cut(s)	205, 445
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	2 cut(s)	56, 294
MaeIII	GTNAC	2 cut(s)	359, 517
MboII	GAAGA	1 cut(s)	164
MhlI	GDGCHC	1 cut(s)	79
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	2 cut(s)	332, 527
MluNI	TGGCCA	1 cut(s)	383
Mly113I	GGCGCC	1 cut(s)	389
MlyI	GAGTC	4 cut(s)	123, 206, 337, 527
MnlI	CCTC	5 cut(s)	23, 127, 130, 272, 297
Mox20I	TGGCCA	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	383
Msp20I	TGGCCA	1 cut(s)	383
MspI	CCGG	4 cut(s)	167, 232, 392, 452
MspR9I	CCNGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	98
NarI	GGCGCC	1 cut(s)	389
NciI	CCSGG	1 cut(s)	168
NcoI	CCATGG	1 cut(s)	384
NdeI	CATATG	1 cut(s)	227
NlaIII	CATG	3 cut(s)	97, 380, 388
NlaIV	GGNNCC	3 cut(s)	287, 349, 390
NmeAIII	GCCGAG	2 cut(s)	134, 244
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	572
PkrI	GCNGC	2 cut(s)	146, 252
PleI	GAGTC	4 cut(s)	122, 205, 336, 527
PluTI	GGCGCC	1 cut(s)	392
PpsI	GAGTC	4 cut(s)	122, 205, 336, 527
Psp124BI	GAGCTC	1 cut(s)	79
PspN4I	GGNNCC	3 cut(s)	287, 349, 390
PspPI	GGNCC	4 cut(s)	45, 164, 286, 512
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SacI	GAGCTC	1 cut(s)	79
SatI	GCNGC	2 cut(s)	145, 251
Sau96I	GGNCC	4 cut(s)	45, 164, 286, 512
SchI	GAGTC	4 cut(s)	123, 206, 337, 527
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	8 cut(s)	59, 79, 138, 240, 297, 353, 434, 495
SfaNI	GCATC	2 cut(s)	205, 445
SfoI	GGCGCC	1 cut(s)	390
SinI	GGWCC	2 cut(s)	286, 512
SpeI	ACTAGT	1 cut(s)	322
Sse9I	AATT	2 cut(s)	332, 527
SsiI	CCGC	3 cut(s)	123, 145, 250
SspDI	GGCGCC	1 cut(s)	388
SspMI	CTAG	1 cut(s)	323
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	2 cut(s)	151, 208
TaiI	ACGT	2 cut(s)	59, 297
TaqI	TCGA	3 cut(s)	73, 132, 531
TasI	AATT	2 cut(s)	332, 527
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	2 cut(s)	147, 253
TfiI	GAWTC	1 cut(s)	572
TspDTI	ATGAA	3 cut(s)	327, 365, 503
VpaK11BI	GGWCC	2 cut(s)	286, 512
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.