Rh5DG073200

D-tyrosyl-tRNA(Tyr) deacylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0012480
Physical Location & Seq
Reverse (-)
6395312 .. 6396874
1563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG073200.1

Sequence Viewer

Length: 495 bp
ATGTACTACTACTGTCTCTGTACGCTTCCGCCCTCTGCAACTATTGGCACCAAACCCAATCGAACTCTCCCCATCAGAGCCATGAGAGCTGTCGTCCAGCGCGTCGCCTCCGCCAGCGTCGAGGTCGAAGGCCGTATCGTCTCGGCCATTGGGCCGGGCCTACTCGTCCTTGTCGGGCTTCACGAGTCCGATTCCGGCTCCGATGCCGAGTACATATGCCGGAAGGTGTTGAATATGAGGCTGTTCACAAATGAGAGTAGCGGAAGAGGATGGGACCAAAACGTAATGCAGAGGAACTATGAAGTGTTACTAGTGAGTCAATTTACATTGTATGGAATCCTCAAGGGTAACAAGCCTGATTTTCATGTGGCCATGGCGCCGGATAAAGCAAAGCCCTTTTATGCTTCGTTGGTTGAGAGCTTTAGAAAATCCTACAAGCCGGATGCAATAAAAGATGGTGTGTTTGGAGCAATGATGAAGGTAAGGGTTTGCTAA

Protein Analysis

164

Amino Acids

18.19

Weight (kDa)

9.34

Isoelectric Point (pI)

24.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tyr_Deacylase PF02580 29 - 163 3.9e-45 D-Tyr-tRNA(Tyr) deacylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012480)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18460 AT4G18460
fragaria_vesca FvH4_3g08260 FvH4_3g08260 FvH4_3g08260
malus_domestica MD10G1285600.v1.1
prunus_persica Prupe.4G056000_v2.0.a1
pyrus_communis pycom10g23870
rosa_chinensis RchiOBHm_Chr5g0009821
rosa_laevigata RLG00000031703
rosa_multiflora Rmu_co8266315.1_g000001 Rmu_sc0008691.1_g000002
rosa_roxburghii Rroxscaffold_1G00066370
rosa_rugosa Rorug04G0446100
rosa_samantha Rh5AG077600 Rh5BG072700 Rh5CG085100 Rh5DG073200
rosa_wichuraiana Rw5G007150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 47, 376
AccII CGCG 1 cut(s) 102
AciI CCGC 3 cut(s) 29, 111, 261
AcoI YGGCCR 2 cut(s) 144, 369
AcyI GRCGYC 1 cut(s) 377
AfaI GTAC 3 cut(s) 5, 22, 212
AgsI TTSAA 1 cut(s) 232
AhlI ACTAGT 1 cut(s) 310
AluBI AGCT 2 cut(s) 89, 420
AluI AGCT 2 cut(s) 89, 420
Alw26I GTCTC 2 cut(s) 20, 145
AoxI GGCC 5 cut(s) 130, 144, 152, 157, 369
AspLEI GCGC 2 cut(s) 102, 379
AspS9I GGNCC 3 cut(s) 152, 157, 274
AsuC2I CCSGG 1 cut(s) 156
AvaII GGWCC 1 cut(s) 274
BalI TGGCCA 1 cut(s) 371
BanI GGYRCC 2 cut(s) 47, 376
BauI CACGAG 1 cut(s) 182
BccI CCATC 3 cut(s) 80, 264, 449
BceAI ACGGC 1 cut(s) 117
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 2 cut(s) 20, 145
BcuI ACTAGT 1 cut(s) 310
BfaI CTAG 1 cut(s) 311
BfoI RGCGCY 1 cut(s) 380
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 3 cut(s) 152, 157, 274
BmiI GGNNCC 4 cut(s) 49, 199, 275, 378
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 2 cut(s) 193, 433
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 156
BsaHI GRCGYC 1 cut(s) 377
BsaJI CCNNGG 1 cut(s) 372
Bse3DI GCAATG 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 2 cut(s) 275, 448
BseMI GCAATG 1 cut(s) 477
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 5 cut(s) 132, 146, 154, 159, 371
BshNI GGYRCC 2 cut(s) 47, 376
BsiSI CCGG 5 cut(s) 155, 195, 220, 380, 440
BslFI GGGAC 1 cut(s) 287
BsmAI GTCTC 2 cut(s) 20, 145
BsmBI CGTCTC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 287
BsnI GGCC 5 cut(s) 132, 146, 154, 159, 371
Bsp19I CCATGG 1 cut(s) 372
BspACI CCGC 3 cut(s) 29, 111, 261
BspANI GGCC 5 cut(s) 132, 146, 154, 159, 371
BspFNI CGCG 1 cut(s) 102
BspLI GGNNCC 4 cut(s) 49, 199, 275, 378
BspT107I GGYRCC 2 cut(s) 47, 376
BsrDI GCAATG 1 cut(s) 477
BssECI CCNNGG 1 cut(s) 372
BssNI GRCGYC 1 cut(s) 377
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 372
Bst2BI CACGAG 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 1 cut(s) 259
BstACI GRCGYC 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 115
BstDSI CCRYGG 1 cut(s) 372
BstF5I GGATG 2 cut(s) 275, 448
BstFNI CGCG 1 cut(s) 102
BstH2I RGCGCY 1 cut(s) 380
BstHHI GCGC 2 cut(s) 102, 379
BstMAI GTCTC 2 cut(s) 20, 145
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 154
BstUI CGCG 1 cut(s) 102
BsuRI GGCC 5 cut(s) 132, 146, 154, 159, 371
BtgI CCRYGG 1 cut(s) 372
BtsCI GGATG 2 cut(s) 275, 448
Cac8I GCNNGC 1 cut(s) 115
CfoI GCGC 2 cut(s) 102, 379
Cfr13I GGNCC 3 cut(s) 152, 157, 274
CseI GACGC 2 cut(s) 91, 106
Csp6I GTAC 3 cut(s) 4, 21, 211
CviAII CATG 3 cut(s) 82, 365, 373
CviQI GTAC 3 cut(s) 4, 21, 211
DinI GGCGCC 1 cut(s) 378
EaeI YGGCCR 2 cut(s) 144, 369
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
EciI GGCGGA 2 cut(s) 18, 100
Eco130I CCWWGG 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 372
EgeI GGCGCC 1 cut(s) 378
EheI GGCGCC 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 372
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 3 cut(s) 85, 368, 376
FaiI YATR 9 cut(s) 83, 215, 217, 236, 300, 333, 366, 374, 402
FaqI GGGAC 1 cut(s) 287
FatI CATG 3 cut(s) 81, 364, 372
FauNDI CATATG 1 cut(s) 215
FokI GGATG 2 cut(s) 282, 455
FspBI CTAG 1 cut(s) 311
GlaI GCGC 2 cut(s) 101, 378
HaeII RGCGCY 1 cut(s) 380
HaeIII GGCC 5 cut(s) 132, 146, 154, 159, 371
HapII CCGG 5 cut(s) 155, 195, 220, 380, 440
HgaI GACGC 2 cut(s) 91, 106
HhaI GCGC 2 cut(s) 102, 379
Hin1I GRCGYC 1 cut(s) 377
Hin1II CATG 3 cut(s) 85, 368, 376
Hin6I GCGC 2 cut(s) 100, 377
HinP1I GCGC 2 cut(s) 100, 377
HinfI GANTC 4 cut(s) 185, 191, 316, 336
HpaII CCGG 5 cut(s) 155, 195, 220, 380, 440
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 3 cut(s) 77, 190, 202
Hpy188III TCNNGA 1 cut(s) 182
Hpy8I GTNNAC 1 cut(s) 246
Hpy99I CGWCG 2 cut(s) 107, 122
HpyAV CCTTC 3 cut(s) 122, 217, 472
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 3 cut(s) 38, 289, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 282
Hsp92I GRCGYC 1 cut(s) 377
Hsp92II CATG 3 cut(s) 85, 368, 376
HspAI GCGC 2 cut(s) 100, 377
KasI GGCGCC 1 cut(s) 376
LmnI GCTCC 2 cut(s) 203, 467
LpnPI CCDG 8 cut(s) 110, 127, 168, 208, 233, 369, 393, 453
LweI GCATC 2 cut(s) 193, 433
MaeI CTAG 1 cut(s) 311
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 2 cut(s) 306, 347
MboII GAAGA 1 cut(s) 276
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 1 cut(s) 320
MluNI TGGCCA 1 cut(s) 371
Mly113I GGCGCC 1 cut(s) 377
MlyI GAGTC 2 cut(s) 194, 325
MnlI CCTC 7 cut(s) 43, 115, 118, 231, 260, 285, 350
Mox20I TGGCCA 1 cut(s) 371
MscI TGGCCA 1 cut(s) 371
Msp20I TGGCCA 1 cut(s) 371
MspI CCGG 5 cut(s) 155, 195, 220, 380, 440
MspR9I CCNGG 1 cut(s) 156
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 86
NarI GGCGCC 1 cut(s) 377
NciI CCSGG 1 cut(s) 156
NcoI CCATGG 1 cut(s) 372
NdeI CATATG 1 cut(s) 215
NlaIII CATG 3 cut(s) 85, 368, 376
NlaIV GGNNCC 4 cut(s) 49, 199, 275, 378
NmeAIII GCCGAG 2 cut(s) 122, 232
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 180
PfeI GAWTC 2 cut(s) 191, 336
PleI GAGTC 2 cut(s) 193, 324
PluTI GGCGCC 1 cut(s) 380
PpsI GAGTC 2 cut(s) 193, 324
PspN4I GGNNCC 4 cut(s) 49, 199, 275, 378
PspPI GGNCC 3 cut(s) 152, 157, 274
RsaI GTAC 3 cut(s) 5, 22, 212
RsaNI GTAC 3 cut(s) 4, 21, 211
Sau96I GGNCC 3 cut(s) 152, 157, 274
SchI GAGTC 2 cut(s) 194, 325
ScrFI CCNGG 1 cut(s) 156
SetI ASST 6 cut(s) 91, 126, 228, 285, 422, 483
SfaNI GCATC 2 cut(s) 193, 433
SfoI GGCGCC 1 cut(s) 378
SinI GGWCC 1 cut(s) 274
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SpeI ACTAGT 1 cut(s) 310
Sse9I AATT 1 cut(s) 320
SsiI CCGC 3 cut(s) 29, 111, 261
SspDI GGCGCC 1 cut(s) 376
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 1 cut(s) 285
TaqI TCGA 3 cut(s) 61, 120, 126
TasI AATT 1 cut(s) 320
TatI WGTACW 2 cut(s) 3, 210
TfiI GAWTC 2 cut(s) 191, 336
TspDTI ATGAA 3 cut(s) 315, 353, 491
VpaK11BI GGWCC 1 cut(s) 274
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.