Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8266315.1

Orthogroup ID

OG0012480

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 649

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8266315.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 373 bp

atgagagccgtcgtccagcgcgtcgcctccgccagcgtcgaggtcgaaggccgcatcgtctcggccattgggccgggcctactcgtccttgtcgggcttcacgagtccgattccggctccgatgccgagtacatatgccggaaggtgttgaatatgaggctgttcacaaatgagagtagcggaagaggatgggaccaaaacgtaatgcagaggaactatgaagtgttactagtgagtcaatttacattgtatggaatcctcaagggtaacaagcctgattttcatgtggccatggcgccggataaagcaaagcccttttatgcttcgttggttgagagctttagaaaatcctacaagccggatgcaataaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002161 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006450 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009987 GO:0016054 GO:0016070 GO:0016787 GO:0016788 GO:0019478 GO:0019752 GO:0034641 GO:0034660 GO:0043170 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0046395 GO:0046416 GO:0046483 GO:0051499 GO:0051500 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0106074 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tyr_Deacylase

Protein Analysis

124

Amino Acids

13.77

Weight (kDa)

9.1

Isoelectric Point (pI)

17.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18460 AT4G18460
fragaria_vesca	FvH4_3g08260 FvH4_3g08260 FvH4_3g08260
malus_domestica	MD10G1285600.v1.1
prunus_persica	Prupe.4G056000_v2.0.a1
pyrus_communis	pycom10g23870
rosa_chinensis	RchiOBHm_Chr5g0009821
rosa_laevigata	RLG00000031703
rosa_multiflora	Rmu_co8266315.1_g000001 Rmu_sc0008691.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066370
rosa_rugosa	Rorug04G0446100
rosa_samantha	Rh5AG077600 Rh5BG072700 Rh5CG085100 Rh5DG073200
rosa_wichuraiana	Rw5G007150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	295
AccII	CGCG	1 cut(s)	21
AciI	CCGC	3 cut(s)	30, 52, 180
AcoI	YGGCCR	2 cut(s)	63, 288
AcyI	GRCGYC	1 cut(s)	296
AfaI	GTAC	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	151
AhlI	ACTAGT	1 cut(s)	229
AluBI	AGCT	1 cut(s)	339
AluI	AGCT	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	64
AoxI	GGCC	5 cut(s)	49, 63, 71, 76, 288
AspLEI	GCGC	2 cut(s)	21, 298
AspS9I	GGNCC	3 cut(s)	71, 76, 193
AsuC2I	CCSGG	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	193
BalI	TGGCCA	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	295
BauI	CACGAG	1 cut(s)	101
BccI	CCATC	1 cut(s)	183
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	64
BcuI	ACTAGT	1 cut(s)	229
BfaI	CTAG	1 cut(s)	230
BfoI	RGCGCY	1 cut(s)	299
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	3 cut(s)	71, 76, 193
BmiI	GGNNCC	3 cut(s)	118, 194, 297
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	3 cut(s)	63, 112, 352
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	2 cut(s)	194, 367
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	5 cut(s)	51, 65, 73, 78, 290
BshNI	GGYRCC	1 cut(s)	295
BsiSI	CCGG	5 cut(s)	74, 114, 139, 299, 359
BslFI	GGGAC	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	64
BsmBI	CGTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	5 cut(s)	51, 65, 73, 78, 290
Bsp19I	CCATGG	1 cut(s)	291
BspACI	CCGC	3 cut(s)	30, 52, 180
BspANI	GGCC	5 cut(s)	51, 65, 73, 78, 290
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	3 cut(s)	118, 194, 297
BspT107I	GGYRCC	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	291
BssNI	GRCGYC	1 cut(s)	296
BssSI	CACGAG	1 cut(s)	101
BssT1I	CCWWGG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	101
Bst6I	CTCTTC	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	34
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	2 cut(s)	194, 367
BstFNI	CGCG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	2 cut(s)	21, 298
BstMAI	GTCTC	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	73
BstUI	CGCG	1 cut(s)	21
BsuRI	GGCC	5 cut(s)	51, 65, 73, 78, 290
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	194, 367
Cac8I	GCNNGC	1 cut(s)	34
CfoI	GCGC	2 cut(s)	21, 298
Cfr13I	GGNCC	3 cut(s)	71, 76, 193
CseI	GACGC	2 cut(s)	10, 25
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	2 cut(s)	284, 292
CviQI	GTAC	1 cut(s)	130
DinI	GGCGCC	1 cut(s)	297
EaeI	YGGCCR	2 cut(s)	63, 288
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
EciI	GGCGGA	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	291
EgeI	GGCGCC	1 cut(s)	297
EheI	GGCGCC	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	2 cut(s)	287, 295
FaiI	YATR	8 cut(s)	134, 136, 155, 219, 252, 285, 293, 321
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	2 cut(s)	283, 291
FauNDI	CATATG	1 cut(s)	134
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	52
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	2 cut(s)	20, 297
GluI	GCNGC	1 cut(s)	52
HaeII	RGCGCY	1 cut(s)	299
HaeIII	GGCC	5 cut(s)	51, 65, 73, 78, 290
HapII	CCGG	5 cut(s)	74, 114, 139, 299, 359
HgaI	GACGC	2 cut(s)	10, 25
HhaI	GCGC	2 cut(s)	21, 298
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	287, 295
Hin6I	GCGC	2 cut(s)	19, 296
HinP1I	GCGC	2 cut(s)	19, 296
HinfI	GANTC	4 cut(s)	104, 110, 235, 255
HpaII	CCGG	5 cut(s)	74, 114, 139, 299, 359
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	2 cut(s)	109, 121
Hpy188III	TCNNGA	1 cut(s)	101
Hpy8I	GTNNAC	1 cut(s)	165
Hpy99I	CGWCG	3 cut(s)	14, 26, 41
HpyAV	CCTTC	2 cut(s)	41, 136
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	2 cut(s)	208, 365
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	2 cut(s)	287, 295
HspAI	GCGC	2 cut(s)	19, 296
KasI	GGCGCC	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	7 cut(s)	29, 46, 87, 127, 152, 288, 312
LweI	GCATC	3 cut(s)	63, 112, 352
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	225, 266
MboII	GAAGA	1 cut(s)	195
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	1 cut(s)	239
MluNI	TGGCCA	1 cut(s)	290
Mly113I	GGCGCC	1 cut(s)	296
MlyI	GAGTC	2 cut(s)	113, 244
MnlI	CCTC	6 cut(s)	34, 37, 150, 179, 204, 269
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	5 cut(s)	74, 114, 139, 299, 359
MspR9I	CCNGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	21
NarI	GGCGCC	1 cut(s)	296
NciI	CCSGG	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	291
NdeI	CATATG	1 cut(s)	134
NlaIII	CATG	2 cut(s)	287, 295
NlaIV	GGNNCC	3 cut(s)	118, 194, 297
NmeAIII	GCCGAG	2 cut(s)	41, 151
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 99
PfeI	GAWTC	2 cut(s)	110, 255
PkrI	GCNGC	1 cut(s)	53
PleI	GAGTC	2 cut(s)	112, 243
PluTI	GGCGCC	1 cut(s)	299
PpsI	GAGTC	2 cut(s)	112, 243
PspN4I	GGNNCC	3 cut(s)	118, 194, 297
PspPI	GGNCC	3 cut(s)	71, 76, 193
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SatI	GCNGC	1 cut(s)	52
Sau96I	GGNCC	3 cut(s)	71, 76, 193
SchI	GAGTC	2 cut(s)	113, 244
ScrFI	CCNGG	1 cut(s)	75
SetI	ASST	4 cut(s)	45, 147, 204, 341
SfaNI	GCATC	3 cut(s)	63, 112, 352
SfoI	GGCGCC	1 cut(s)	297
SinI	GGWCC	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SpeI	ACTAGT	1 cut(s)	229
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	3 cut(s)	30, 52, 180
SspDI	GGCGCC	1 cut(s)	295
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	291
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	39, 45
TasI	AATT	1 cut(s)	239
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	110, 255
TspDTI	ATGAA	2 cut(s)	234, 272
VpaK11BI	GGWCC	1 cut(s)	193
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.