Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0012480

Physical Location & Seq

Genomic Coordinates Reverse (-)

7420915 .. 7422523

Gene Structure 1609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G007150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTACTACTACTGTCTCTCTACGCTTCCGCCCTCTGCAACTATTGGCACCAAACCCAATCGAACTCTCCCCATCAGAGCCATGAGAGCTGTCGTCCAGCGCGTCGCCTCCGCCAGCGTCGAGGTCGAAGGCCGTATCGTCTCGGCCATTGGGCCGGGCCTACTCGTCCTTGTCGGGCTTCACGAGTCCGATTCCGGCTCCGATGCCGAGTACATATGCCGGAAGGTGTTGAATATGAGGCTGTTCACAAATGAGAGTAGCGGAAGAGGATGGGACCAAAACGTAATGCAGAGGAACTATGAAGTGTTACTAGTGAGTCAATTTACATTGTATGGAATCCTCAAGGGTAACAAGCCTGATTTTCATGTGGCCATGGCGCCGGATAAAGCAAAGCCCTTTTATGCTTCGTTGGTTGAGAGCTTTAGAAAATCCTACAAGCCGGATGCAATAAAAGATGGTGTGTTTGGAGCAATGATGAAGGTCAATTTGGTCAATGATGGACCAGTTACAATGCAAATCGACTCACCATCCCCTAAGAACTCAAATGGCGTCACAGAAGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002161 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006450 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009987 GO:0016054 GO:0016070 GO:0016787 GO:0016788 GO:0019478 GO:0019752 GO:0034641 GO:0034660 GO:0043170 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0046395 GO:0046416 GO:0046483 GO:0051499 GO:0051500 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0106074 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tyr_Deacylase

Protein Analysis

188

Amino Acids

20.62

Weight (kDa)

8.83

Isoelectric Point (pI)

30.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tyr_Deacylase	PF02580	29 - 174	3.4e-52	D-Tyr-tRNA(Tyr) deacylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18460 AT4G18460
fragaria_vesca	FvH4_3g08260 FvH4_3g08260 FvH4_3g08260
malus_domestica	MD10G1285600.v1.1
prunus_persica	Prupe.4G056000_v2.0.a1
pyrus_communis	pycom10g23870
rosa_chinensis	RchiOBHm_Chr5g0009821
rosa_laevigata	RLG00000031703
rosa_multiflora	Rmu_co8266315.1_g000001 Rmu_sc0008691.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066370
rosa_rugosa	Rorug04G0446100
rosa_samantha	Rh5AG077600 Rh5BG072700 Rh5CG085100 Rh5DG073200
rosa_wichuraiana	Rw5G007150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	47, 376
AccII	CGCG	1 cut(s)	102
AciI	CCGC	3 cut(s)	29, 111, 261
AcoI	YGGCCR	2 cut(s)	144, 369
AcyI	GRCGYC	2 cut(s)	377, 549
AfaI	GTAC	2 cut(s)	5, 212
AgsI	TTSAA	1 cut(s)	232
AhlI	ACTAGT	1 cut(s)	310
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AluBI	AGCT	2 cut(s)	89, 420
AluI	AGCT	2 cut(s)	89, 420
Alw26I	GTCTC	2 cut(s)	20, 145
AoxI	GGCC	5 cut(s)	130, 144, 152, 157, 369
AspLEI	GCGC	2 cut(s)	102, 379
AspS9I	GGNCC	4 cut(s)	152, 157, 274, 500
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	516
AvaII	GGWCC	2 cut(s)	274, 500
BalI	TGGCCA	1 cut(s)	371
BanI	GGYRCC	2 cut(s)	47, 376
BauI	CACGAG	1 cut(s)	182
BccI	CCATC	5 cut(s)	80, 264, 449, 491, 535
BceAI	ACGGC	1 cut(s)	117
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	2 cut(s)	20, 145
BcuI	ACTAGT	1 cut(s)	310
BfaI	CTAG	1 cut(s)	311
BfoI	RGCGCY	1 cut(s)	380
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	2 cut(s)	274, 500
BmgT120I	GGNCC	4 cut(s)	152, 157, 274, 500
BmiI	GGNNCC	4 cut(s)	49, 199, 275, 378
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	2 cut(s)	193, 433
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	156
BsaHI	GRCGYC	2 cut(s)	377, 549
BsaJI	CCNNGG	1 cut(s)	372
Bse1I	ACTGG	1 cut(s)	503
Bse3DI	GCAATG	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	3 cut(s)	275, 448, 527
BseMI	GCAATG	1 cut(s)	477
BseNI	ACTGG	1 cut(s)	503
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	5 cut(s)	132, 146, 154, 159, 371
BshNI	GGYRCC	2 cut(s)	47, 376
BsiSI	CCGG	5 cut(s)	155, 195, 220, 380, 440
BslFI	GGGAC	1 cut(s)	287
BsmAI	GTCTC	2 cut(s)	20, 145
BsmBI	CGTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	5 cut(s)	132, 146, 154, 159, 371
Bsp19I	CCATGG	1 cut(s)	372
BspACI	CCGC	3 cut(s)	29, 111, 261
BspANI	GGCC	5 cut(s)	132, 146, 154, 159, 371
BspFNI	CGCG	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	563
BspLI	GGNNCC	4 cut(s)	49, 199, 275, 378
BspT107I	GGYRCC	2 cut(s)	47, 376
BsrDI	GCAATG	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	503
BssECI	CCNNGG	1 cut(s)	372
BssNI	GRCGYC	2 cut(s)	377, 549
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	372
Bst2BI	CACGAG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	14
Bst6I	CTCTTC	1 cut(s)	259
BstACI	GRCGYC	2 cut(s)	377, 549
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	1 cut(s)	534
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	3 cut(s)	275, 448, 527
BstFNI	CGCG	1 cut(s)	102
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	2 cut(s)	102, 379
BstMAI	GTCTC	2 cut(s)	20, 145
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	154
BstUI	CGCG	1 cut(s)	102
BsuRI	GGCC	5 cut(s)	132, 146, 154, 159, 371
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	3 cut(s)	275, 448, 527
Cac8I	GCNNGC	1 cut(s)	115
CciI	TCATGA	1 cut(s)	563
CfoI	GCGC	2 cut(s)	102, 379
Cfr13I	GGNCC	4 cut(s)	152, 157, 274, 500
CseI	GACGC	3 cut(s)	91, 106, 538
Csp6I	GTAC	2 cut(s)	4, 211
CviAII	CATG	4 cut(s)	82, 365, 373, 564
CviQI	GTAC	2 cut(s)	4, 211
DdeI	CTNAG	1 cut(s)	534
DinI	GGCGCC	1 cut(s)	378
EaeI	YGGCCR	2 cut(s)	144, 369
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
EciI	GGCGGA	2 cut(s)	18, 100
Eco130I	CCWWGG	1 cut(s)	372
Eco47I	GGWCC	2 cut(s)	274, 500
EcoT14I	CCWWGG	1 cut(s)	372
EgeI	GGCGCC	1 cut(s)	378
EheI	GGCGCC	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	372
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	4 cut(s)	85, 368, 376, 567
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	4 cut(s)	81, 364, 372, 563
FauNDI	CATATG	1 cut(s)	215
FokI	GGATG	3 cut(s)	282, 455, 514
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	2 cut(s)	101, 378
HaeII	RGCGCY	1 cut(s)	380
HaeIII	GGCC	5 cut(s)	132, 146, 154, 159, 371
HapII	CCGG	5 cut(s)	155, 195, 220, 380, 440
HgaI	GACGC	3 cut(s)	91, 106, 538
HhaI	GCGC	2 cut(s)	102, 379
Hin1I	GRCGYC	2 cut(s)	377, 549
Hin1II	CATG	4 cut(s)	85, 368, 376, 567
Hin6I	GCGC	2 cut(s)	100, 377
HinP1I	GCGC	2 cut(s)	100, 377
HinfI	GANTC	6 cut(s)	185, 191, 316, 336, 521, 560
HpaII	CCGG	5 cut(s)	155, 195, 220, 380, 440
HphI	GGTGA	1 cut(s)	516
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	3 cut(s)	77, 190, 202
Hpy188III	TCNNGA	2 cut(s)	182, 564
Hpy8I	GTNNAC	1 cut(s)	246
Hpy99I	CGWCG	2 cut(s)	107, 122
HpyAV	CCTTC	3 cut(s)	122, 217, 472
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	4 cut(s)	38, 289, 446, 514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	534
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	2 cut(s)	377, 549
Hsp92II	CATG	4 cut(s)	85, 368, 376, 567
HspAI	GCGC	2 cut(s)	100, 377
KasI	GGCGCC	1 cut(s)	376
LmnI	GCTCC	2 cut(s)	203, 467
LpnPI	CCDG	9 cut(s)	110, 127, 168, 208, 233, 369, 393, 453, 516
LweI	GCATC	2 cut(s)	193, 433
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	4 cut(s)	306, 347, 505, 550
MboII	GAAGA	1 cut(s)	276
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	2 cut(s)	320, 484
MluNI	TGGCCA	1 cut(s)	371
Mly113I	GGCGCC	1 cut(s)	377
MlyI	GAGTC	3 cut(s)	194, 325, 515
MnlI	CCTC	7 cut(s)	43, 115, 118, 231, 260, 285, 350
Mox20I	TGGCCA	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	371
Msp20I	TGGCCA	1 cut(s)	371
MspI	CCGG	5 cut(s)	155, 195, 220, 380, 440
MspR9I	CCNGG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	86
NarI	GGCGCC	1 cut(s)	377
NciI	CCSGG	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	372
NdeI	CATATG	1 cut(s)	215
NlaIII	CATG	4 cut(s)	85, 368, 376, 567
NlaIV	GGNNCC	4 cut(s)	49, 199, 275, 378
NmeAIII	GCCGAG	2 cut(s)	122, 232
NmuCI	GTSAC	1 cut(s)	550
PagI	TCATGA	1 cut(s)	563
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 180
PfeI	GAWTC	3 cut(s)	191, 336, 560
PleI	GAGTC	3 cut(s)	193, 324, 515
PluTI	GGCGCC	1 cut(s)	380
PpsI	GAGTC	3 cut(s)	193, 324, 515
PspN4I	GGNNCC	4 cut(s)	49, 199, 275, 378
PspPI	GGNCC	4 cut(s)	152, 157, 274, 500
RsaI	GTAC	2 cut(s)	5, 212
RsaNI	GTAC	2 cut(s)	4, 211
Sau96I	GGNCC	4 cut(s)	152, 157, 274, 500
SchI	GAGTC	3 cut(s)	194, 325, 515
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	6 cut(s)	91, 126, 228, 285, 422, 483
SfaNI	GCATC	2 cut(s)	193, 433
SfoI	GGCGCC	1 cut(s)	378
SinI	GGWCC	2 cut(s)	274, 500
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SpeI	ACTAGT	1 cut(s)	310
Sse9I	AATT	2 cut(s)	320, 484
SsiI	CCGC	3 cut(s)	29, 111, 261
SspDI	GGCGCC	1 cut(s)	376
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	14
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	4 cut(s)	61, 120, 126, 519
TasI	AATT	2 cut(s)	320, 484
TatI	WGTACW	2 cut(s)	3, 210
TfiI	GAWTC	3 cut(s)	191, 336, 560
TseFI	GTSAC	1 cut(s)	550
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	3 cut(s)	315, 353, 491
VpaK11BI	GGWCC	2 cut(s)	274, 500
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.