Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0012480

Physical Location & Seq

Genomic Coordinates Reverse (-)

5976174 .. 5977831

Gene Structure 1658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG072700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTACTTCTACTGTCTCTCTACGCTTCCGCCCTTTGCAACTATTGGCACCAAACCCAATCGAACTCTCCCAATCAGAGCCATGAGAGCCGTCGTCCAGCGCGTCGCCTCCGCCAGCGTCGAAGTCGAAGGCCGCACCGTCTCGGCCATTGGGCCGGGCCTACTCGTCCTTGTCGGGCTTCACGAGTCTGATTCCGGCTCCGATGCCGAGTACATATGCCGGAAGGTGTTGAATATGAGGCTGTTCACAAATGAGAGTACCGCTAGAGGATGGGACCAAAACGTAATGCAGAGGAACTATGAAGTGTTACTAGTGAGTCAATTTACATTGTATGGAATCCTCAAGGGTAACAAGCCTGATTTTCATGTGGCCATGGCGCCGGATAAAGCAAAGCCCTTTTATGCTACGTTGGTTGAGAGCTTTAGAAAATCCTACAAGCCGGATGCAATAAAAGGTGAAATTATTTTCATGTTTTCTTTGGCCTATTTCCTGTTTTTGATTGTATGTGTAACTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002161 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006450 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009987 GO:0016054 GO:0016070 GO:0016787 GO:0016788 GO:0019478 GO:0019752 GO:0034641 GO:0034660 GO:0043170 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0046395 GO:0046416 GO:0046483 GO:0051499 GO:0051500 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0106074 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tyr_Deacylase

Protein Analysis

172

Amino Acids

19.3

Weight (kDa)

9.17

Isoelectric Point (pI)

21.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tyr_Deacylase	PF02580	29 - 152	6.9e-39	D-Tyr-tRNA(Tyr) deacylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18460 AT4G18460
fragaria_vesca	FvH4_3g08260 FvH4_3g08260 FvH4_3g08260
malus_domestica	MD10G1285600.v1.1
prunus_persica	Prupe.4G056000_v2.0.a1
pyrus_communis	pycom10g23870
rosa_chinensis	RchiOBHm_Chr5g0009821
rosa_laevigata	RLG00000031703
rosa_multiflora	Rmu_co8266315.1_g000001 Rmu_sc0008691.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066370
rosa_rugosa	Rorug04G0446100
rosa_samantha	Rh5AG077600 Rh5BG072700 Rh5CG085100 Rh5DG073200
rosa_wichuraiana	Rw5G007150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	47, 376
AccII	CGCG	1 cut(s)	102
AciI	CCGC	4 cut(s)	29, 111, 133, 261
AcoI	YGGCCR	2 cut(s)	144, 369
AcyI	GRCGYC	1 cut(s)	377
AfaI	GTAC	3 cut(s)	5, 212, 259
AgsI	TTSAA	1 cut(s)	232
AhlI	ACTAGT	1 cut(s)	310
AluBI	AGCT	1 cut(s)	420
AluI	AGCT	1 cut(s)	420
Alw26I	GTCTC	2 cut(s)	20, 145
AoxI	GGCC	6 cut(s)	130, 144, 152, 157, 369, 480
AspLEI	GCGC	2 cut(s)	102, 379
AspS9I	GGNCC	3 cut(s)	152, 157, 274
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	274
BalI	TGGCCA	1 cut(s)	371
BanI	GGYRCC	2 cut(s)	47, 376
BauI	CACGAG	1 cut(s)	182
BccI	CCATC	1 cut(s)	264
BceAI	ACGGC	1 cut(s)	74
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	2 cut(s)	20, 145
BcuI	ACTAGT	1 cut(s)	310
BfaI	CTAG	2 cut(s)	264, 311
BfoI	RGCGCY	1 cut(s)	380
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	3 cut(s)	152, 157, 274
BmiI	GGNNCC	4 cut(s)	49, 199, 275, 378
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	2 cut(s)	193, 433
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	275, 448
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	6 cut(s)	132, 146, 154, 159, 371, 482
BshNI	GGYRCC	2 cut(s)	47, 376
BsiSI	CCGG	5 cut(s)	155, 195, 220, 380, 440
BslFI	GGGAC	1 cut(s)	287
BsmAI	GTCTC	2 cut(s)	20, 145
BsmBI	CGTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	6 cut(s)	132, 146, 154, 159, 371, 482
Bsp19I	CCATGG	1 cut(s)	372
BspACI	CCGC	4 cut(s)	29, 111, 133, 261
BspANI	GGCC	6 cut(s)	132, 146, 154, 159, 371, 482
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	4 cut(s)	49, 199, 275, 378
BspT107I	GGYRCC	2 cut(s)	47, 376
BssECI	CCNNGG	1 cut(s)	372
BssNI	GRCGYC	1 cut(s)	377
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	372
Bst2BI	CACGAG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	14, 139
BstACI	GRCGYC	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	115
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	2 cut(s)	275, 448
BstFNI	CGCG	1 cut(s)	102
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	2 cut(s)	102, 379
BstMAI	GTCTC	2 cut(s)	20, 145
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	154
BstUI	CGCG	1 cut(s)	102
BsuRI	GGCC	6 cut(s)	132, 146, 154, 159, 371, 482
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	2 cut(s)	275, 448
Cac8I	GCNNGC	1 cut(s)	115
CfoI	GCGC	2 cut(s)	102, 379
Cfr13I	GGNCC	3 cut(s)	152, 157, 274
CseI	GACGC	2 cut(s)	91, 106
Csp6I	GTAC	3 cut(s)	4, 211, 258
CviAII	CATG	4 cut(s)	82, 365, 373, 469
CviQI	GTAC	3 cut(s)	4, 211, 258
DinI	GGCGCC	1 cut(s)	378
EaeI	YGGCCR	2 cut(s)	144, 369
EciI	GGCGGA	2 cut(s)	18, 100
Eco130I	CCWWGG	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	372
EgeI	GGCGCC	1 cut(s)	378
EheI	GGCGCC	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	372
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	4 cut(s)	85, 368, 376, 472
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	4 cut(s)	81, 364, 372, 468
FauNDI	CATATG	1 cut(s)	215
Fnu4HI	GCNGC	1 cut(s)	133
FokI	GGATG	2 cut(s)	282, 455
Fsp4HI	GCNGC	1 cut(s)	133
FspBI	CTAG	2 cut(s)	264, 311
GlaI	GCGC	2 cut(s)	101, 378
GluI	GCNGC	1 cut(s)	133
HaeII	RGCGCY	1 cut(s)	380
HaeIII	GGCC	6 cut(s)	132, 146, 154, 159, 371, 482
HapII	CCGG	5 cut(s)	155, 195, 220, 380, 440
HgaI	GACGC	2 cut(s)	91, 106
HhaI	GCGC	2 cut(s)	102, 379
Hin1I	GRCGYC	1 cut(s)	377
Hin1II	CATG	4 cut(s)	85, 368, 376, 472
Hin6I	GCGC	2 cut(s)	100, 377
HinP1I	GCGC	2 cut(s)	100, 377
HinfI	GANTC	4 cut(s)	185, 191, 316, 336
HpaII	CCGG	5 cut(s)	155, 195, 220, 380, 440
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	3 cut(s)	77, 190, 202
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	246
Hpy99I	CGWCG	3 cut(s)	95, 107, 122
HpyAV	CCTTC	2 cut(s)	122, 217
HpyCH4III	ACNGT	2 cut(s)	14, 139
HpyCH4IV	ACGT	2 cut(s)	282, 407
HpyCH4V	TGCA	3 cut(s)	38, 289, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpySE526I	ACGT	2 cut(s)	282, 407
Hsp92I	GRCGYC	1 cut(s)	377
Hsp92II	CATG	4 cut(s)	85, 368, 376, 472
HspAI	GCGC	2 cut(s)	100, 377
KasI	GGCGCC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	9 cut(s)	110, 127, 168, 208, 233, 369, 393, 453, 503
LweI	GCATC	2 cut(s)	193, 433
MaeI	CTAG	2 cut(s)	264, 311
MaeII	ACGT	2 cut(s)	282, 407
MaeIII	GTNAC	3 cut(s)	306, 347, 508
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	2 cut(s)	320, 459
MluNI	TGGCCA	1 cut(s)	371
Mly113I	GGCGCC	1 cut(s)	377
MlyI	GAGTC	2 cut(s)	194, 325
MnlI	CCTC	5 cut(s)	118, 231, 260, 285, 350
Mox20I	TGGCCA	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	371
Msp20I	TGGCCA	1 cut(s)	371
MspI	CCGG	5 cut(s)	155, 195, 220, 380, 440
MspR9I	CCNGG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	86
NarI	GGCGCC	1 cut(s)	377
NciI	CCSGG	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	372
NdeI	CATATG	1 cut(s)	215
NlaIII	CATG	4 cut(s)	85, 368, 376, 472
NlaIV	GGNNCC	4 cut(s)	49, 199, 275, 378
NmeAIII	GCCGAG	2 cut(s)	122, 232
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 180
PfeI	GAWTC	2 cut(s)	191, 336
PkrI	GCNGC	1 cut(s)	134
PleI	GAGTC	2 cut(s)	193, 324
PluTI	GGCGCC	1 cut(s)	380
PpsI	GAGTC	2 cut(s)	193, 324
PspN4I	GGNNCC	4 cut(s)	49, 199, 275, 378
PspPI	GGNCC	3 cut(s)	152, 157, 274
RsaI	GTAC	3 cut(s)	5, 212, 259
RsaNI	GTAC	3 cut(s)	4, 211, 258
SatI	GCNGC	1 cut(s)	133
Sau96I	GGNCC	3 cut(s)	152, 157, 274
SchI	GAGTC	2 cut(s)	194, 325
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	5 cut(s)	228, 285, 410, 422, 457
SfaNI	GCATC	2 cut(s)	193, 433
SfoI	GGCGCC	1 cut(s)	378
SinI	GGWCC	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SpeI	ACTAGT	1 cut(s)	310
Sse9I	AATT	2 cut(s)	320, 459
SsiI	CCGC	4 cut(s)	29, 111, 133, 261
SspDI	GGCGCC	1 cut(s)	376
SspMI	CTAG	2 cut(s)	264, 311
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	2 cut(s)	14, 139
TaiI	ACGT	2 cut(s)	285, 410
TaqI	TCGA	3 cut(s)	61, 120, 126
TasI	AATT	2 cut(s)	320, 459
TatI	WGTACW	2 cut(s)	3, 210
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	191, 336
TspDTI	ATGAA	3 cut(s)	315, 353, 457
VpaK11BI	GGWCC	1 cut(s)	274
XspI	CTAG	2 cut(s)	264, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.