Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008691.1

Orthogroup ID

OG0012480

Physical Location & Seq

Genomic Coordinates Reverse (-)

13218 .. 14467

Gene Structure 1250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008691.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgagagccgtcgtccagcgcgtcgcctccgccagcgtcgaggtcgaaggccgcatcgtctcggccattgggccgggcctactcgtccttgtcgggcttcacgagtccgattccggctccgatgccgagtacatatgccggaaggtgttgaatatgaggctgttcacaaatgagagtagcggaagaggatgggaccaaaacgtaatgcagaggaactatgaagtgttactagtgagtcaatttacattgtatggaatcctcaagggtaacaagcctgattttcatgtggccatggcgccggataaagcaaagcccttttatgcttcgttggttgagagctttagaaaatcctacaagccggatgcaataaaagatggtgtgtttggagcaatgatgaaggtcaatttggtcaatgatggaccagttacaatgcaaatcgactcaccatcccctaagaactcaaatggcgtcacagaagaatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002161 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006450 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009987 GO:0016054 GO:0016070 GO:0016787 GO:0016788 GO:0019478 GO:0019752 GO:0034641 GO:0034660 GO:0043170 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0046395 GO:0046416 GO:0046483 GO:0051499 GO:0051500 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0106074 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tyr_Deacylase

Protein Analysis

161

Amino Acids

17.61

Weight (kDa)

6.73

Isoelectric Point (pI)

25.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18460 AT4G18460
fragaria_vesca	FvH4_3g08260 FvH4_3g08260 FvH4_3g08260
malus_domestica	MD10G1285600.v1.1
prunus_persica	Prupe.4G056000_v2.0.a1
pyrus_communis	pycom10g23870
rosa_chinensis	RchiOBHm_Chr5g0009821
rosa_laevigata	RLG00000031703
rosa_multiflora	Rmu_co8266315.1_g000001 Rmu_sc0008691.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066370
rosa_rugosa	Rorug04G0446100
rosa_samantha	Rh5AG077600 Rh5BG072700 Rh5CG085100 Rh5DG073200
rosa_wichuraiana	Rw5G007150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	295
AccII	CGCG	1 cut(s)	21
AciI	CCGC	3 cut(s)	30, 52, 180
AcoI	YGGCCR	2 cut(s)	63, 288
AcyI	GRCGYC	2 cut(s)	296, 468
AfaI	GTAC	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	151
AhlI	ACTAGT	1 cut(s)	229
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	1 cut(s)	339
AluI	AGCT	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	64
AoxI	GGCC	5 cut(s)	49, 63, 71, 76, 288
AspLEI	GCGC	2 cut(s)	21, 298
AspS9I	GGNCC	4 cut(s)	71, 76, 193, 419
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	435
AvaII	GGWCC	2 cut(s)	193, 419
BalI	TGGCCA	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	295
BauI	CACGAG	1 cut(s)	101
BccI	CCATC	4 cut(s)	183, 368, 410, 454
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	64
BcuI	ACTAGT	1 cut(s)	229
BfaI	CTAG	1 cut(s)	230
BfoI	RGCGCY	1 cut(s)	299
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	2 cut(s)	193, 419
BmgT120I	GGNCC	4 cut(s)	71, 76, 193, 419
BmiI	GGNNCC	3 cut(s)	118, 194, 297
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	3 cut(s)	63, 112, 352
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	75
BsaHI	GRCGYC	2 cut(s)	296, 468
BsaJI	CCNNGG	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	422
Bse3DI	GCAATG	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	3 cut(s)	194, 367, 446
BseMI	GCAATG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	422
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	5 cut(s)	51, 65, 73, 78, 290
BshNI	GGYRCC	1 cut(s)	295
BsiSI	CCGG	5 cut(s)	74, 114, 139, 299, 359
BslFI	GGGAC	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	64
BsmBI	CGTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	5 cut(s)	51, 65, 73, 78, 290
Bsp19I	CCATGG	1 cut(s)	291
BspACI	CCGC	3 cut(s)	30, 52, 180
BspANI	GGCC	5 cut(s)	51, 65, 73, 78, 290
BspFNI	CGCG	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	482
BspLI	GGNNCC	3 cut(s)	118, 194, 297
BspT107I	GGYRCC	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	422
BssECI	CCNNGG	1 cut(s)	291
BssNI	GRCGYC	2 cut(s)	296, 468
BssSI	CACGAG	1 cut(s)	101
BssT1I	CCWWGG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	101
Bst6I	CTCTTC	1 cut(s)	178
BstACI	GRCGYC	2 cut(s)	296, 468
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	453
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	3 cut(s)	194, 367, 446
BstFNI	CGCG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	2 cut(s)	21, 298
BstMAI	GTCTC	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	73
BstUI	CGCG	1 cut(s)	21
BsuRI	GGCC	5 cut(s)	51, 65, 73, 78, 290
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	3 cut(s)	194, 367, 446
Cac8I	GCNNGC	1 cut(s)	34
CciI	TCATGA	1 cut(s)	482
CfoI	GCGC	2 cut(s)	21, 298
Cfr13I	GGNCC	4 cut(s)	71, 76, 193, 419
CseI	GACGC	3 cut(s)	10, 25, 457
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	3 cut(s)	284, 292, 483
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	453
DinI	GGCGCC	1 cut(s)	297
EaeI	YGGCCR	2 cut(s)	63, 288
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
EciI	GGCGGA	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	291
Eco47I	GGWCC	2 cut(s)	193, 419
EcoT14I	CCWWGG	1 cut(s)	291
EgeI	GGCGCC	1 cut(s)	297
EheI	GGCGCC	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	3 cut(s)	287, 295, 486
FaiI	YATR	9 cut(s)	134, 136, 155, 219, 252, 285, 293, 321, 484
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	3 cut(s)	283, 291, 482
FauNDI	CATATG	1 cut(s)	134
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	3 cut(s)	201, 374, 433
Fsp4HI	GCNGC	1 cut(s)	52
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	2 cut(s)	20, 297
GluI	GCNGC	1 cut(s)	52
HaeII	RGCGCY	1 cut(s)	299
HaeIII	GGCC	5 cut(s)	51, 65, 73, 78, 290
HapII	CCGG	5 cut(s)	74, 114, 139, 299, 359
HgaI	GACGC	3 cut(s)	10, 25, 457
HhaI	GCGC	2 cut(s)	21, 298
Hin1I	GRCGYC	2 cut(s)	296, 468
Hin1II	CATG	3 cut(s)	287, 295, 486
Hin6I	GCGC	2 cut(s)	19, 296
HinP1I	GCGC	2 cut(s)	19, 296
HinfI	GANTC	6 cut(s)	104, 110, 235, 255, 440, 479
HpaII	CCGG	5 cut(s)	74, 114, 139, 299, 359
HphI	GGTGA	1 cut(s)	435
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	2 cut(s)	109, 121
Hpy188III	TCNNGA	2 cut(s)	101, 483
Hpy8I	GTNNAC	1 cut(s)	165
Hpy99I	CGWCG	3 cut(s)	14, 26, 41
HpyAV	CCTTC	3 cut(s)	41, 136, 391
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	3 cut(s)	208, 365, 433
HpyF3I	CTNAG	1 cut(s)	453
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	2 cut(s)	296, 468
Hsp92II	CATG	3 cut(s)	287, 295, 486
HspAI	GCGC	2 cut(s)	19, 296
KasI	GGCGCC	1 cut(s)	295
LmnI	GCTCC	2 cut(s)	122, 386
LpnPI	CCDG	9 cut(s)	29, 46, 87, 127, 152, 288, 312, 372, 435
LweI	GCATC	3 cut(s)	63, 112, 352
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	4 cut(s)	225, 266, 424, 469
MboII	GAAGA	1 cut(s)	195
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	2 cut(s)	239, 403
MluNI	TGGCCA	1 cut(s)	290
Mly113I	GGCGCC	1 cut(s)	296
MlyI	GAGTC	3 cut(s)	113, 244, 434
MnlI	CCTC	6 cut(s)	34, 37, 150, 179, 204, 269
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	5 cut(s)	74, 114, 139, 299, 359
MspR9I	CCNGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	21
NarI	GGCGCC	1 cut(s)	296
NciI	CCSGG	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	291
NdeI	CATATG	1 cut(s)	134
NlaIII	CATG	3 cut(s)	287, 295, 486
NlaIV	GGNNCC	3 cut(s)	118, 194, 297
NmeAIII	GCCGAG	2 cut(s)	41, 151
NmuCI	GTSAC	1 cut(s)	469
PagI	TCATGA	1 cut(s)	482
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 99
PfeI	GAWTC	3 cut(s)	110, 255, 479
PkrI	GCNGC	1 cut(s)	53
PleI	GAGTC	3 cut(s)	112, 243, 434
PluTI	GGCGCC	1 cut(s)	299
PpsI	GAGTC	3 cut(s)	112, 243, 434
PspN4I	GGNNCC	3 cut(s)	118, 194, 297
PspPI	GGNCC	4 cut(s)	71, 76, 193, 419
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SatI	GCNGC	1 cut(s)	52
Sau96I	GGNCC	4 cut(s)	71, 76, 193, 419
SchI	GAGTC	3 cut(s)	113, 244, 434
ScrFI	CCNGG	1 cut(s)	75
SetI	ASST	5 cut(s)	45, 147, 204, 341, 402
SfaNI	GCATC	3 cut(s)	63, 112, 352
SfoI	GGCGCC	1 cut(s)	297
SinI	GGWCC	2 cut(s)	193, 419
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SpeI	ACTAGT	1 cut(s)	229
Sse9I	AATT	2 cut(s)	239, 403
SsiI	CCGC	3 cut(s)	30, 52, 180
SspDI	GGCGCC	1 cut(s)	295
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	291
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	3 cut(s)	39, 45, 438
TasI	AATT	2 cut(s)	239, 403
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	3 cut(s)	110, 255, 479
TseFI	GTSAC	1 cut(s)	469
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	3 cut(s)	234, 272, 410
VpaK11BI	GGWCC	2 cut(s)	193, 419
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.