Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012480

Physical Location & Seq

Genomic Coordinates Forward (+)

60184208 .. 60186305

Gene Structure 2098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0446100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCAGCGGAGGGAACAACGAAGAAGATGATAGCGACGCAGGAGGAGATGGTGGAGAATCGGGTGCCGATAGCGTATCGGGACCAGTGCGCGCACTTGCTGATCCCTCTGAACAAGTGCCGCCAGGCCGAGATGTACCTGCCGTGGAAGTGCGGCAACGAGCGCCACGTGTACGAGAAGTGCGAGTACGAGCTCGTCATGGAGCGGATGCTCCTGATGCAGAAGATCCGAGAGAAGGAGGCCCAGATTCAGCAGGGACTCGCCATCCCTCTCATTCCCAAGACCGCCGGCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002161 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006450 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009987 GO:0016054 GO:0016070 GO:0016787 GO:0016788 GO:0019478 GO:0019752 GO:0034641 GO:0034660 GO:0043170 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0046395 GO:0046416 GO:0046483 GO:0051499 GO:0051500 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0106074 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tyr_Deacylase

Protein Analysis

98

Amino Acids

11.36

Weight (kDa)

7.66

Isoelectric Point (pI)

22.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUF_B7	PF05676	11 - 70	6.5e-29	NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18460 AT4G18460
fragaria_vesca	FvH4_3g08260 FvH4_3g08260 FvH4_3g08260
malus_domestica	MD10G1285600.v1.1
prunus_persica	Prupe.4G056000_v2.0.a1
pyrus_communis	pycom10g23870
rosa_chinensis	RchiOBHm_Chr5g0009821
rosa_laevigata	RLG00000031703
rosa_multiflora	Rmu_co8266315.1_g000001 Rmu_sc0008691.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066370
rosa_rugosa	Rorug04G0446100
rosa_samantha	Rh5AG077600 Rh5BG072700 Rh5CG085100 Rh5DG073200
rosa_wichuraiana	Rw5G007150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	64
AccBSI	CCGCTC	1 cut(s)	205
AccII	CGCG	1 cut(s)	92
AciI	CCGC	5 cut(s)	8, 121, 153, 205, 285
AclWI	GGATC	2 cut(s)	97, 220
AcvI	CACGTG	1 cut(s)	169
AfaI	GTAC	3 cut(s)	137, 173, 188
AfiI	CCNNNNNNNGG	1 cut(s)	235
AflIII	ACRYGT	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw21I	GWGCWC	1 cut(s)	195
AlwI	GGATC	2 cut(s)	97, 220
AoxI	GGCC	2 cut(s)	126, 240
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	4 cut(s)	92, 94, 165, 293
AspS9I	GGNCC	2 cut(s)	82, 241
AvaII	GGWCC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	195
BarI	GAAGNNNNNNTAC	2 cut(s)	170, 202
BbrPI	CACGTG	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	43, 272
BceAI	ACGGC	1 cut(s)	127
BciT130I	CCWGG	1 cut(s)	125
BfoI	RGCGCY	2 cut(s)	166, 294
BfuAI	ACCTGC	1 cut(s)	147
BisI	GCNGC	3 cut(s)	6, 121, 154
BlsI	GCNGC	3 cut(s)	7, 122, 155
Bme1390I	CCNGG	1 cut(s)	125
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	2 cut(s)	82, 241
BmiI	GGNNCC	2 cut(s)	66, 83
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	2 cut(s)	198, 207
BsaAI	YACGTR	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	2 cut(s)	213, 264
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseNI	ACTGG	1 cut(s)	85
BsePI	GCGCGC	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	2 cut(s)	128, 242
BshNI	GGYRCC	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	2 cut(s)	95, 270
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmFI	GGGAC	2 cut(s)	95, 270
BsnI	GGCC	2 cut(s)	128, 242
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	102, 225
BspACI	CCGC	5 cut(s)	8, 121, 153, 205, 285
BspANI	GGCC	2 cut(s)	128, 242
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	66, 83
BspMI	ACCTGC	1 cut(s)	147
BspPI	GGATC	2 cut(s)	97, 220
BspT107I	GGYRCC	1 cut(s)	64
BsrBI	CCGCTC	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	143
BssHII	GCGCGC	1 cut(s)	90
BssMI	GATC	2 cut(s)	102, 225
Bst2UI	CCWGG	1 cut(s)	125
BstBAI	YACGTR	1 cut(s)	169
BstC8I	GCNNGC	2 cut(s)	92, 289
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	213, 264
BstFNI	CGCG	1 cut(s)	92
BstH2I	RGCGCY	2 cut(s)	166, 294
BstHHI	GCGC	4 cut(s)	92, 94, 165, 293
BstKTI	GATC	2 cut(s)	105, 228
BstMBI	GATC	2 cut(s)	102, 225
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 217
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	128, 242
BtgI	CCRYGG	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	213, 264
BtsIMutI	CAGTG	1 cut(s)	92
BveI	ACCTGC	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	92, 289
CfoI	GCGC	4 cut(s)	92, 94, 165, 293
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	82, 241
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	136, 172, 187
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	3 cut(s)	128, 193, 242
CviKI_1	RGCY	3 cut(s)	128, 193, 242
CviQI	GTAC	3 cut(s)	136, 172, 187
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	2 cut(s)	104, 227
DpnII	GATC	2 cut(s)	102, 225
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	193
Eco72I	CACGTG	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	1 cut(s)	202
FaiI	YATR	1 cut(s)	200
FaqI	GGGAC	2 cut(s)	95, 270
FatI	CATG	1 cut(s)	198
Fnu4HI	GCNGC	3 cut(s)	6, 121, 154
FokI	GGATG	2 cut(s)	220, 251
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	3 cut(s)	6, 121, 154
GlaI	GCGC	4 cut(s)	91, 93, 164, 292
GluI	GCNGC	3 cut(s)	6, 121, 154
HaeII	RGCGCY	2 cut(s)	166, 294
HaeIII	GGCC	2 cut(s)	128, 242
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	4 cut(s)	92, 94, 165, 293
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	4 cut(s)	90, 92, 163, 291
HinP1I	GCGC	4 cut(s)	90, 92, 163, 291
HinfI	GANTC	3 cut(s)	58, 247, 258
HpaII	CCGG	1 cut(s)	288
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	111, 230
Hpy188III	TCNNGA	2 cut(s)	80, 214
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 217
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	4 cut(s)	90, 92, 163, 291
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	102, 225
LmnI	GCTCC	2 cut(s)	202, 216
LpnPI	CCDG	8 cut(s)	26, 98, 110, 137, 152, 227, 239, 257
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	2 cut(s)	198, 207
MaeII	ACGT	1 cut(s)	168
MalI	GATC	2 cut(s)	104, 227
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	2 cut(s)	102, 225
MboII	GAAGA	3 cut(s)	34, 37, 235
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	252
MnlI	CCTC	5 cut(s)	4, 37, 117, 232, 279
MreI	CGCCGGCG	1 cut(s)	287
MroNI	GCCGGC	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	162, 217
NaeI	GCCGGC	1 cut(s)	289
NdeII	GATC	2 cut(s)	102, 225
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	2 cut(s)	66, 83
NmeAIII	GCCGAG	1 cut(s)	154
PauI	GCGCGC	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	2 cut(s)	165, 180
PdiI	GCCGGC	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	58, 247
PkrI	GCNGC	3 cut(s)	7, 122, 155
PleI	GAGTC	1 cut(s)	252
PmaCI	CACGTG	1 cut(s)	169
PmlI	CACGTG	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	252
Ppu21I	YACGTR	1 cut(s)	169
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	123
PspCI	CACGTG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	66, 83
PspPI	GGNCC	2 cut(s)	82, 241
PsuI	RGATCY	1 cut(s)	225
PteI	GCGCGC	1 cut(s)	90
RsaI	GTAC	3 cut(s)	137, 173, 188
RsaNI	GTAC	3 cut(s)	136, 172, 187
SacI	GAGCTC	1 cut(s)	195
SatI	GCNGC	3 cut(s)	6, 121, 154
Sau3AI	GATC	2 cut(s)	102, 225
Sau96I	GGNCC	2 cut(s)	82, 241
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	3 cut(s)	141, 171, 195
SfaNI	GCATC	2 cut(s)	198, 207
SgrAI	CRCCGGYG	1 cut(s)	287
SinI	GGWCC	1 cut(s)	82
SsiI	CCGC	5 cut(s)	8, 121, 153, 205, 285
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	123
TaiI	ACGT	1 cut(s)	171
TauI	GCSGC	2 cut(s)	123, 156
TfiI	GAWTC	2 cut(s)	58, 247
TscAI	CASTG	1 cut(s)	92
TseI	GCWGC	1 cut(s)	5
TspRI	CASTG	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.