Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009090

Physical Location & Seq

Genomic Coordinates Reverse (-)

10224661 .. 10227140

Gene Structure 2480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGAAGAGGAAGAAGAAAGAGGAGGAGGAGGAGAAGTTGATAGTGACTAGAGAATTCGCGAAGAGATGGCGAGATCTGAGCGGTCAAAACCATTGGAAAGGGATGTTACAGCCGTTGGATCAAGATCTCCGGGAATATATCATACATTATGGTGAGATGGCTCAGGCTGGTTACGATACTTTCAATATCAACACCGAATCTCAGTTCGCCGGTGCTAGCATCTACTCTAGAAAAGACTTCTTCGCCAAGGTTGGTTTAGAGATAGCACACCCGTACACAAAGTACAAAGTGACGAAGTTTATATACGCGACATCCGATATCCACGTGCCTGAGTCATTCTTATTGTTCCCAATTTCACGTGAGGGATGGTCAAAGGAATCAAATTGGATGGGTTACGTGGCGGTAACAGACGACCAAGGCACGGCACTTCTTGGTCGGAGAGATATCGTGGTTTCTTGGAGAGGCTCAGTGCAACCACTTGAATGGGTCGAAGACTTCGAGTTTGGTTTAGTCAACGCCATAAAAATCTTCGGTGAAAGAAACGATCAAGTACAAATTCATCAAGGTTGGTATTCAATCTACATGTCTCAAGATGAACGATCACCTTTTACTAAGACCAATGCTCGTGACCAGGTATTGCGAGAGGTTGGAAGATTGTTGGAGAAGTATAAGGACGAAGAAGTTAGTATAACTATATGTGGTCATAGTCTTGGAGCTGCACTCGCGACGCTTAGTGCCACTGATATTGTGGCTAATGGTTATAACCGACCAAAGAGCCGTCCTGACAAGTCTTGTCCTGTTACTGCCTTTGTCTTTGCTAGTCCTCGTGTTGGGGATTCAGACTTTAGGAAACTCTTTTCCGGATTGGAAGATATCCGAGTGTTACGGACAAGGAATCTACCGGACGTAATTCCGATCTATCCACCGATAGGTTACTCCGAGGTAGGAGATGAGTTTCCAATAGACACAAGAAAGTCACCATACATGAAATCTCCTGGAAACCTCGCAACCTTTCACTGCTTAGAGGGTTACTTGCATGGCGTTGCCGGGACTCAAGGAACGAACAAAGCTGACTTATTCAGACTCGATGTGGAAAGAGCCATCGGATTGGTCAATAAATCAGTGGATGGGTTAAAAGACGAGTGTATGGTCCCAGGGAAATGGAGGGTTCTTAAAAACAAAGGTATGGCCCAACAAGACGATGGATCTTGGGAGTTAGTGGACCATGAGATTGATGATAATGAAGATTTGGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

419

Amino Acids

47.79

Weight (kDa)

5.53

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	167 - 327	5.1e-35	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18550 AT4G18550 AT4G18550
fragaria_vesca	FvH4_3g08010 FvH4_4g04171
malus_domestica	MD10G1282800.v1.1
prunus_persica	Prupe.4G059100_v2.0.a1
pyrus_communis	pycom05g28060 pycom05g28090 pycom10g23590
rosa_chinensis	RchiOBHm_Chr5g0010301
rosa_laevigata	RLG00000031735
rosa_multiflora	Rmu_co8415181.1_g000001 Rmu_sc0025892.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065950
rosa_rugosa	Rorug04G0450000 Rorug04G0450100
rosa_samantha	Rh5AG081100 Rh5BG076000 Rh5CG089300 Rh5DG076700
rosa_wichuraiana	Rw5G007510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	762
AccBSI	CCGCTC	1 cut(s)	81
AccII	CGCG	3 cut(s)	59, 308, 725
AccIII	TCCGGA	1 cut(s)	860
AciI	CCGC	2 cut(s)	81, 401
AclWI	GGATC	2 cut(s)	126, 1213
AcsI	RAATTY	2 cut(s)	53, 555
AcvI	CACGTG	2 cut(s)	325, 359
AfaI	GTAC	3 cut(s)	275, 284, 552
AfiI	CCNNNNNNNGG	3 cut(s)	421, 830, 929
AflIII	ACRYGT	1 cut(s)	582
AgsI	TTSAA	3 cut(s)	184, 482, 576
AjnI	CCWGG	3 cut(s)	630, 994, 1153
AluBI	AGCT	2 cut(s)	716, 1070
AluI	AGCT	2 cut(s)	716, 1070
Alw26I	GTCTC	1 cut(s)	591
AlwI	GGATC	2 cut(s)	126, 1213
Aor13HI	TCCGGA	1 cut(s)	860
AoxI	GGCC	1 cut(s)	1188
ApeKI	GCWGC	1 cut(s)	716
ApoI	RAATTY	2 cut(s)	53, 555
ArsI	GACNNNNNNTTYG	2 cut(s)	485, 517
AspS9I	GGNCC	3 cut(s)	1150, 1189, 1222
AsuC2I	CCSGG	2 cut(s)	131, 1048
AsuHPI	GGTGA	4 cut(s)	164, 545, 594, 969
AsuNHI	GCTAGC	1 cut(s)	215
AvaII	GGWCC	2 cut(s)	1150, 1222
BarI	GAAGNNNNNNTAC	2 cut(s)	287, 319
BauI	CACGAG	2 cut(s)	624, 825
BbrPI	CACGTG	2 cut(s)	325, 359
BbsI	GAAGAC	1 cut(s)	498
BbvI	GCAGC	1 cut(s)	703
BccI	CCATC	7 cut(s)	60, 151, 360, 382, 1109, 1121, 1196
BceAI	ACGGC	3 cut(s)	97, 438, 762
BciT130I	CCWGG	3 cut(s)	632, 996, 1155
BcnI	CCSGG	2 cut(s)	131, 1048
BcoDI	GTCTC	1 cut(s)	591
BfaI	CTAG	4 cut(s)	48, 216, 228, 819
BglII	AGATCT	2 cut(s)	73, 124
BisI	GCNGC	1 cut(s)	717
BlsI	GCNGC	1 cut(s)	718
Bme1390I	CCNGG	5 cut(s)	131, 632, 996, 1048, 1155
Bme18I	GGWCC	2 cut(s)	1150, 1222
BmgT120I	GGNCC	3 cut(s)	1150, 1189, 1222
BmiI	GGNNCC	1 cut(s)	1152
BmrFI	CCNGG	5 cut(s)	131, 632, 996, 1048, 1155
BmsI	GCATC	1 cut(s)	228
BmtI	GCTAGC	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	498
BplI	GAGNNNNNCTC	2 cut(s)	705, 737
Bpu10I	CCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	2 cut(s)	573, 1038
BpuMI	CCSGG	2 cut(s)	131, 1048
BsaAI	YACGTR	3 cut(s)	325, 359, 397
BsaBI	GATNNNNATC	1 cut(s)	123
BsaJI	CCNNGG	5 cut(s)	246, 415, 939, 1153, 1154
BsaWI	WCCGGW	2 cut(s)	860, 901
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	3 cut(s)	421, 830, 929
Bse118I	RCCGGY	1 cut(s)	209
Bse8I	GATNNNNATC	1 cut(s)	123
BseAI	TCCGGA	1 cut(s)	860
BseBI	CCWGG	3 cut(s)	632, 996, 1155
BseDI	CCNNGG	5 cut(s)	246, 415, 939, 1153, 1154
BseGI	GGATG	5 cut(s)	108, 311, 371, 393, 1132
BseJI	GATNNNNATC	1 cut(s)	123
BseLI	CCNNNNNNNGG	3 cut(s)	421, 830, 929
BseMII	CTCAG	5 cut(s)	68, 176, 215, 321, 480
BseRI	GAGGAG	4 cut(s)	35, 38, 41, 44
BseXI	GCAGC	1 cut(s)	703
BsgI	GTGCAG	1 cut(s)	702
Bsh1236I	CGCG	3 cut(s)	59, 308, 725
BshFI	GGCC	1 cut(s)	1190
BsiSI	CCGG	5 cut(s)	130, 210, 861, 902, 1047
BslFI	GGGAC	2 cut(s)	1063, 1136
BslI	CCNNNNNNNGG	3 cut(s)	421, 830, 929
BsmAI	GTCTC	1 cut(s)	591
BsmFI	GGGAC	2 cut(s)	1063, 1136
BsnI	GGCC	1 cut(s)	1190
Bsp13I	TCCGGA	1 cut(s)	860
Bsp143I	GATC	7 cut(s)	73, 118, 124, 544, 599, 915, 1205
Bsp68I	TCGCGA	2 cut(s)	59, 725
BspACI	CCGC	2 cut(s)	81, 401
BspANI	GGCC	1 cut(s)	1190
BspCNI	CTCAG	5 cut(s)	69, 175, 214, 322, 479
BspEI	TCCGGA	1 cut(s)	860
BspFNI	CGCG	3 cut(s)	59, 308, 725
BspLI	GGNNCC	1 cut(s)	1152
BspOI	GCTAGC	1 cut(s)	219
BspPI	GGATC	2 cut(s)	126, 1213
BsrBI	CCGCTC	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	5 cut(s)	246, 415, 939, 1153, 1154
BssMI	GATC	7 cut(s)	73, 118, 124, 544, 599, 915, 1205
BssSI	CACGAG	2 cut(s)	624, 825
BssT1I	CCWWGG	2 cut(s)	246, 415
Bst2BI	CACGAG	2 cut(s)	624, 825
Bst2UI	CCWGG	3 cut(s)	632, 996, 1155
Bst6I	CTCTTC	1 cut(s)	56
BstBAI	YACGTR	3 cut(s)	325, 359, 397
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	8 cut(s)	77, 162, 201, 330, 466, 612, 731, 1021
BstF5I	GGATG	5 cut(s)	108, 311, 371, 393, 1132
BstFNI	CGCG	3 cut(s)	59, 308, 725
BstKTI	GATC	7 cut(s)	76, 121, 127, 547, 602, 918, 1208
BstMAI	GTCTC	1 cut(s)	591
BstMBI	GATC	7 cut(s)	73, 118, 124, 544, 599, 915, 1205
BstMWI	GCNNNNNNNGC	1 cut(s)	722
BstNI	CCWGG	3 cut(s)	632, 996, 1155
BstNSI	RCATGY	1 cut(s)	586
BstSCI	CCNGG	5 cut(s)	129, 630, 994, 1046, 1153
BstUI	CGCG	3 cut(s)	59, 308, 725
BstV1I	GCAGC	1 cut(s)	703
BstV2I	GAAGAC	1 cut(s)	498
BstX2I	RGATCY	3 cut(s)	73, 124, 1205
BstXI	CCANNNNNNTGG	3 cut(s)	483, 1108, 1161
BstYI	RGATCY	3 cut(s)	73, 124, 1205
BsuRI	GGCC	1 cut(s)	1190
BtsCI	GGATG	5 cut(s)	108, 311, 371, 393, 1132
BtsI	GCAGTG	1 cut(s)	1015
BtsIMutI	CAGTG	4 cut(s)	474, 738, 1015, 1128
BtuMI	TCGCGA	2 cut(s)	59, 725
Cac8I	GCNNGC	1 cut(s)	217
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	3 cut(s)	1150, 1189, 1222
CseI	GACGC	1 cut(s)	736
CsiI	ACCWGGT	1 cut(s)	630
Csp6I	GTAC	3 cut(s)	274, 283, 551
CspCI	CAANNNNNGTGG	2 cut(s)	727, 762
CviAII	CATG	4 cut(s)	583, 985, 1037, 1226
CviQI	GTAC	3 cut(s)	274, 283, 551
DdeI	CTNAG	8 cut(s)	77, 162, 201, 330, 466, 612, 731, 1021
DpnI	GATC	7 cut(s)	75, 120, 126, 546, 601, 917, 1207
DpnII	GATC	7 cut(s)	73, 118, 124, 544, 599, 915, 1205
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	246, 415
Eco32I	GATATC	3 cut(s)	319, 445, 874
Eco47I	GGWCC	2 cut(s)	1150, 1222
Eco72I	CACGTG	2 cut(s)	325, 359
EcoRI	GAATTC	1 cut(s)	53
EcoRII	CCWGG	3 cut(s)	630, 994, 1153
EcoRV	GATATC	3 cut(s)	319, 445, 874
EcoT14I	CCWWGG	2 cut(s)	246, 415
ErhI	CCWWGG	2 cut(s)	246, 415
FaeI	CATG	4 cut(s)	586, 988, 1040, 1229
FaqI	GGGAC	2 cut(s)	1063, 1136
FatI	CATG	4 cut(s)	582, 984, 1036, 1225
Fnu4HI	GCNGC	1 cut(s)	717
FokI	GGATG	5 cut(s)	115, 298, 378, 400, 1139
Fsp4HI	GCNGC	1 cut(s)	717
FspBI	CTAG	4 cut(s)	48, 216, 228, 819
GluI	GCNGC	1 cut(s)	717
HaeIII	GGCC	1 cut(s)	1190
HapII	CCGG	5 cut(s)	130, 210, 861, 902, 1047
HgaI	GACGC	1 cut(s)	736
Hin1II	CATG	4 cut(s)	586, 988, 1040, 1229
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	7 cut(s)	197, 332, 377, 836, 895, 1051, 1083
HpaII	CCGG	5 cut(s)	130, 210, 861, 902, 1047
HphI	GGTGA	4 cut(s)	164, 545, 594, 969
Hpy166II	GTNNAC	3 cut(s)	276, 514, 1222
Hpy188III	TCNNGA	8 cut(s)	58, 122, 228, 590, 626, 724, 782, 861
Hpy8I	GTNNAC	3 cut(s)	276, 514, 1222
Hpy99I	CGWCG	1 cut(s)	730
HpyCH4IV	ACGT	4 cut(s)	324, 358, 396, 906
HpyCH4V	TGCA	3 cut(s)	472, 719, 1036
HpyF10VI	GCNNNNNNNGC	1 cut(s)	722
HpyF3I	CTNAG	8 cut(s)	77, 162, 201, 330, 466, 612, 731, 1021
HpySE526I	ACGT	4 cut(s)	324, 358, 396, 906
Hsp92II	CATG	4 cut(s)	586, 988, 1040, 1229
Kpn2I	TCCGGA	1 cut(s)	860
Kzo9I	GATC	7 cut(s)	73, 118, 124, 544, 599, 915, 1205
LmnI	GCTCC	1 cut(s)	713
Lsp1109I	GCAGC	1 cut(s)	703
LweI	GCATC	1 cut(s)	228
MabI	ACCWGGT	1 cut(s)	630
MaeI	CTAG	4 cut(s)	48, 216, 228, 819
MaeII	ACGT	4 cut(s)	324, 358, 396, 906
MalI	GATC	7 cut(s)	75, 120, 126, 546, 601, 917, 1207
MbiI	CCGCTC	1 cut(s)	81
MboI	GATC	7 cut(s)	73, 118, 124, 544, 599, 915, 1205
MflI	RGATCY	3 cut(s)	73, 124, 1205
MluCI	AATT	5 cut(s)	53, 351, 382, 555, 909
MlyI	GAGTC	3 cut(s)	341, 1045, 1077
MmeI	TCCRAC	4 cut(s)	96, 416, 628, 639
MroI	TCCGGA	1 cut(s)	860
MseI	TTAA	2 cut(s)	1133, 1173
MslI	CAYNNNNRTG	2 cut(s)	150, 481
MspI	CCGG	5 cut(s)	130, 210, 861, 902, 1047
MspR9I	CCNGG	5 cut(s)	131, 632, 996, 1048, 1155
MvaI	CCWGG	3 cut(s)	632, 996, 1155
MvnI	CGCG	3 cut(s)	59, 308, 725
MwoI	GCNNNNNNNGC	1 cut(s)	722
NciI	CCSGG	2 cut(s)	131, 1048
NdeII	GATC	7 cut(s)	73, 118, 124, 544, 599, 915, 1205
NheI	GCTAGC	1 cut(s)	215
NlaIII	CATG	4 cut(s)	586, 988, 1040, 1229
NlaIV	GGNNCC	1 cut(s)	1152
NmuCI	GTSAC	4 cut(s)	43, 289, 626, 975
NruI	TCGCGA	2 cut(s)	59, 725
NspI	RCATGY	1 cut(s)	586
PasI	CCCWGGG	1 cut(s)	1154
PciI	ACATGT	1 cut(s)	582
PcsI	WCGNNNNNNNCGW	2 cut(s)	312, 495
PfeI	GAWTC	4 cut(s)	197, 377, 836, 895
PfoI	TCCNGGA	2 cut(s)	129, 994
PkrI	GCNGC	1 cut(s)	718
PleI	GAGTC	3 cut(s)	340, 1045, 1077
PmaCI	CACGTG	2 cut(s)	325, 359
PmlI	CACGTG	2 cut(s)	325, 359
PpsI	GAGTC	3 cut(s)	340, 1045, 1077
Ppu21I	YACGTR	3 cut(s)	325, 359, 397
PscI	ACATGT	1 cut(s)	582
PsiI	TTATAA	1 cut(s)	762
Psp6I	CCWGG	3 cut(s)	630, 994, 1153
PspCI	CACGTG	2 cut(s)	325, 359
PspGI	CCWGG	3 cut(s)	630, 994, 1153
PspN4I	GGNNCC	1 cut(s)	1152
PspPI	GGNCC	3 cut(s)	1150, 1189, 1222
PsuI	RGATCY	3 cut(s)	73, 124, 1205
RruI	TCGCGA	2 cut(s)	59, 725
RsaI	GTAC	3 cut(s)	275, 284, 552
RsaNI	GTAC	3 cut(s)	274, 283, 551
RseI	CAYNNNNRTG	2 cut(s)	150, 481
SaqAI	TTAA	2 cut(s)	1133, 1173
SatI	GCNGC	1 cut(s)	717
Sau3AI	GATC	7 cut(s)	73, 118, 124, 544, 599, 915, 1205
Sau96I	GGNCC	3 cut(s)	1150, 1189, 1222
SchI	GAGTC	3 cut(s)	341, 1045, 1077
ScrFI	CCNGG	5 cut(s)	131, 632, 996, 1048, 1155
SexAI	ACCWGGT	1 cut(s)	630
SfaNI	GCATC	1 cut(s)	228
SgrAI	CRCCGGYG	1 cut(s)	209
SinI	GGWCC	2 cut(s)	1150, 1222
SmiMI	CAYNNNNRTG	2 cut(s)	150, 481
SmlI	CTYRAG	2 cut(s)	588, 1053
SmoI	CTYRAG	2 cut(s)	588, 1053
Sse9I	AATT	5 cut(s)	53, 351, 382, 555, 909
SsiI	CCGC	2 cut(s)	81, 401
SspMI	CTAG	4 cut(s)	48, 216, 228, 819
StyD4I	CCNGG	5 cut(s)	129, 630, 994, 1046, 1153
StyI	CCWWGG	2 cut(s)	246, 415
TaiI	ACGT	4 cut(s)	327, 361, 399, 909
TaqI	TCGA	3 cut(s)	489, 498, 1086
TasI	AATT	5 cut(s)	53, 351, 382, 555, 909
TatI	WGTACW	2 cut(s)	282, 550
TfiI	GAWTC	4 cut(s)	197, 377, 836, 895
Tru1I	TTAA	2 cut(s)	1133, 1173
Tru9I	TTAA	2 cut(s)	1133, 1173
TscAI	CASTG	4 cut(s)	474, 745, 1022, 1128
TseFI	GTSAC	4 cut(s)	43, 289, 626, 975
TseI	GCWGC	1 cut(s)	716
Tsp45I	GTSAC	4 cut(s)	43, 289, 626, 975
TspDTI	ATGAA	5 cut(s)	17, 548, 609, 1001, 1257
TspGWI	ACGGA	1 cut(s)	901
TspRI	CASTG	4 cut(s)	474, 745, 1022, 1128
VpaK11BI	GGWCC	2 cut(s)	1150, 1222
XapI	RAATTY	2 cut(s)	53, 555
XbaI	TCTAGA	1 cut(s)	227
XceI	RCATGY	1 cut(s)	586
XcmI	CCANNNNNNNNNTGG	2 cut(s)	745, 1199
XspI	CTAG	4 cut(s)	48, 216, 228, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.