FvH4_3g08010

phospholipase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
4721087 .. 4723114
2028 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08010.t1

Sequence Viewer

Length: 1317 bp
ATGCGTTCTAAGTTTTTCCGAGGAGTGGATATAAAGAAGGCGGTAAGACTCATCGTCCCAACAAGAATGTTTGGTCAGAAGAATTCGGAAAACATGGATACCATTATTAGCAAGCACAGCATTGTGAAAAGATGGAAGAAACTAAGCGGCGAAAACAACTGGGAAGGCCTATTGGATCCCCTCGACATAGATCTCCGAAAGTACATAATTCACTACGGAGAAATGGCTCAAGCTACATATGATGCCTTCAACACAGAGAGGGCATCAAAGTTTGCAGGAAGCAGTAGGTATGCTAGGAAGAGCTTCTTCTCGAGAGTTGGTTTAGAGAAGGCCAATGCATTTAGGTACAATGTGACCAAGTTTTTGTATGCAACTTCACAAATTCAAGTGCCAGAAGCATTTATCGTCAAGTCTTTGTCAAGGGAAGCTTGGAGCAAAGAATCGAATTGGATAGGGTATGTTGCTGTGGCCACAGATGAGGGGAAGGCTTTGTTGGGCAGGAGGGATATTGTGATTGCTTGGAGAGGTACTGTTCGGTCCTTGGAGTGGGTTAATGATTTGCATTTTAGTATGGTTTCTGCTTCAAATATACTAGGTGAGGAGGCTGATGCTAAGGTGCACCAAGGTTGGTACTCCATCTATACTTCCGATGATTCGCATTCCCCTTTCAACAAGACCAGTGCCAGAAACCAGGTTCTTGCTGAGGTGAGCAGACTAGTAGAGCAATACAAAGATGAGGAAATCAGCATAACCATAACAGGACACAGTTTGGGAGCAGCAATTGCAACACTCAGTGCAGTTGACATTGTTGCCAACGGTATCAACAAACCGAAAGACCAGACAGCAAATAAACTCTCATCATGTCCAGTAACAGCCTTTGTCTTTGCTTGCCCTCGCGTGGGAGACTCAAACTTCAAGAAACTCTTCTCTAGCTACAACAACCTCCGAGTCTTGCGAGTTAGCAACGCACTTGATATTGTCCCCAACTATCCATTTCTAGTAGGCTATTCCGAGGTGGGAGAAGAGCTGGGAATCGACTCACGAAAGTCGAGCTACTTGAAGAGCCCCGGAAGCGTGCTTAGTTGGCATAACTTGGAGGGGTATTTGCATGGAGTTGCAGGAACACAAGGGAGTAAGGGAGGGTTCAAGTTGGAAGTGAAGCGTGACATAGCACTGGTTAACAAAAGCCATGACGCTCTCAAGGAGGAGTATCTTGTGCCGGTTTCTTGGCGTTGCGAGAAGGACAAGGGGATGGTTCAGATGGAAGATGGCTCTTGGCAGCTCATGGATCATGAGGAGGAGGATTTTGATGATTGA

Protein Analysis

439

Amino Acids

49.29

Weight (kDa)

8.18

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 171 - 333 5e-39 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 897
AciI CCGC 2 cut(s) 41, 147
AclWI GGATC 3 cut(s) 170, 183, 1296
AcoI YGGCCR 1 cut(s) 468
AcsI RAATTY 2 cut(s) 82, 381
AdeI CACNNNGTG 1 cut(s) 794
AfaI GTAC 4 cut(s) 203, 347, 529, 632
AfiI CCNNNNNNNGG 4 cut(s) 25, 546, 898, 899
AgsI TTSAA 7 cut(s) 250, 386, 585, 670, 916, 1060, 1147
AhdI GACNNNNNGTC 1 cut(s) 53
AhlI ACTAGT 1 cut(s) 715
AjnI CCWGG 1 cut(s) 690
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AluBI AGCT 7 cut(s) 233, 303, 428, 933, 1027, 1053, 1282
AluI AGCT 7 cut(s) 233, 303, 428, 933, 1027, 1053, 1282
Alw21I GWGCWC 1 cut(s) 621
Alw26I GTCTC 1 cut(s) 897
Alw44I GTGCAC 1 cut(s) 617
AlwI GGATC 3 cut(s) 170, 183, 1296
Ama87I CYCGRG 1 cut(s) 310
AoxI GGCC 3 cut(s) 166, 330, 468
ApaLI GTGCAC 1 cut(s) 617
ApeKI GCWGC 2 cut(s) 776, 1279
ApoI RAATTY 2 cut(s) 82, 381
ArsI GACNNNNNNTTYG 2 cut(s) 346, 378
Asp700I GAANNNNTTC 2 cut(s) 302, 923
AspS9I GGNCC 1 cut(s) 537
AsuC2I CCSGG 1 cut(s) 1068
AsuHPI GGTGA 2 cut(s) 608, 718
AvaI CYCGRG 1 cut(s) 310
AvaII GGWCC 1 cut(s) 537
BaeGI GKGCMC 1 cut(s) 621
BalI TGGCCA 1 cut(s) 470
BamHI GGATCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 1067
Bbv12I GWGCWC 1 cut(s) 621
BbvCI CCTCAGC 1 cut(s) 702
BbvI GCAGC 2 cut(s) 788, 1291
BccI CCATC 5 cut(s) 126, 644, 1246, 1255, 1262
BciT130I CCWGG 1 cut(s) 692
BciVI GTATCC 1 cut(s) 91
BcnI CCSGG 1 cut(s) 1068
BcoDI GTCTC 1 cut(s) 897
BcuI ACTAGT 1 cut(s) 715
BfaI CTAG 5 cut(s) 294, 593, 716, 930, 998
BfuI GTATCC 1 cut(s) 91
BglII AGATCT 1 cut(s) 190
BisI GCNGC 3 cut(s) 148, 777, 1280
BlsI GCNGC 3 cut(s) 149, 778, 1281
Bme1390I CCNGG 2 cut(s) 692, 1068
Bme18I GGWCC 1 cut(s) 537
BmeRI GACNNNNNGTC 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 537
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 2 cut(s) 692, 1068
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 3 cut(s) 232, 272, 598
BmuI ACTGGG 1 cut(s) 169
Bpu10I CCTNAGC 2 cut(s) 612, 702
BpuEI CTTGAG 2 cut(s) 213, 1184
BpuMI CCSGG 1 cut(s) 1068
BsaJI CCNNGG 5 cut(s) 19, 540, 622, 1011, 1066
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 546, 898, 899
Bse118I RCCGGY 1 cut(s) 1219
Bse1I ACTGG 4 cut(s) 164, 678, 866, 1179
BseBI CCWGG 1 cut(s) 692
BseDI CCNNGG 5 cut(s) 19, 540, 622, 1011, 1066
BseGI GGATG 1 cut(s) 1257
BseLI CCNNNNNNNGG 4 cut(s) 25, 546, 898, 899
BseMII CTCAG 2 cut(s) 693, 805
BseNI ACTGG 4 cut(s) 164, 678, 866, 1179
BseRI GAGGAG 5 cut(s) 36, 614, 1220, 1310, 1313
BseSI GKGCMC 1 cut(s) 621
BseXI GCAGC 2 cut(s) 788, 1291
BseYI CCCAGC 1 cut(s) 1027
BsgI GTGCAG 1 cut(s) 816
Bsh1236I CGCG 1 cut(s) 897
BshFI GGCC 3 cut(s) 168, 332, 470
BsiHKAI GWGCWC 1 cut(s) 621
BsiHKCI CYCGRG 1 cut(s) 310
BsiSI CCGG 2 cut(s) 1068, 1220
BslFI GGGAC 2 cut(s) 41, 965
BslI CCNNNNNNNGG 4 cut(s) 25, 546, 898, 899
BsmAI GTCTC 1 cut(s) 897
BsmFI GGGAC 2 cut(s) 41, 965
BsmI GAATGC 1 cut(s) 658
BsnI GGCC 3 cut(s) 168, 332, 470
BsoBI CYCGRG 1 cut(s) 310
Bsp1286I GDGCHC 2 cut(s) 621, 1067
Bsp143I GATC 3 cut(s) 175, 190, 1288
BspACI CCGC 2 cut(s) 41, 147
BspANI GGCC 3 cut(s) 168, 332, 470
BspCNI CTCAG 2 cut(s) 694, 804
BspFNI CGCG 1 cut(s) 897
BspHI TCATGA 1 cut(s) 1291
BspLI GGNNCC 1 cut(s) 177
BspPI GGATC 3 cut(s) 170, 183, 1296
BspQI GCTCTTC 3 cut(s) 293, 1017, 1055
BsrFI RCCGGY 1 cut(s) 1219
BsrI ACTGG 4 cut(s) 164, 678, 866, 1179
BssAI RCCGGY 1 cut(s) 1219
BssECI CCNNGG 5 cut(s) 19, 540, 622, 1011, 1066
BssMI GATC 3 cut(s) 175, 190, 1288
BssT1I CCWWGG 2 cut(s) 540, 622
Bst2UI CCWGG 1 cut(s) 692
Bst4CI ACNGT 3 cut(s) 532, 767, 818
Bst6I CTCTTC 4 cut(s) 293, 929, 1017, 1055
BstAPI GCANNNNNTGC 1 cut(s) 782
BstC8I GCNNGC 3 cut(s) 113, 889, 1076
BstDEI CTNAG 6 cut(s) 9, 143, 612, 702, 791, 1079
BstF5I GGATG 1 cut(s) 1257
BstFNI CGCG 1 cut(s) 897
BstKTI GATC 3 cut(s) 178, 193, 1291
BstMAI GTCTC 1 cut(s) 897
BstMBI GATC 3 cut(s) 175, 190, 1288
BstMWI GCNNNNNNNGC 4 cut(s) 117, 782, 1071, 1084
BstNI CCWGG 1 cut(s) 692
BstSCI CCNGG 2 cut(s) 690, 1066
BstSLI GKGCMC 1 cut(s) 621
BstUI CGCG 1 cut(s) 897
BstV1I GCAGC 2 cut(s) 788, 1291
BstX2I RGATCY 2 cut(s) 175, 190
BstYI RGATCY 2 cut(s) 175, 190
BsuI GTATCC 1 cut(s) 91
BsuRI GGCC 3 cut(s) 168, 332, 470
BtsCI GGATG 1 cut(s) 1257
BtsIMutI CAGTG 3 cut(s) 685, 799, 1172
Cac8I GCNNGC 3 cut(s) 113, 889, 1076
CciI TCATGA 1 cut(s) 1291
Cfr10I RCCGGY 1 cut(s) 1219
Cfr13I GGNCC 1 cut(s) 537
CseI GACGC 1 cut(s) 1202
CsiI ACCWGGT 1 cut(s) 690
Csp6I GTAC 4 cut(s) 202, 346, 528, 631
CviAII CATG 6 cut(s) 94, 861, 1109, 1190, 1285, 1292
CviQI GTAC 4 cut(s) 202, 346, 528, 631
DdeI CTNAG 6 cut(s) 9, 143, 612, 702, 791, 1079
DpnI GATC 3 cut(s) 177, 192, 1290
DpnII GATC 3 cut(s) 175, 190, 1288
DraIII CACNNNGTG 1 cut(s) 794
DriI GACNNNNNGTC 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 468
Eam1104I CTCTTC 4 cut(s) 293, 929, 1017, 1055
Eam1105I GACNNNNNGTC 1 cut(s) 53
EarI CTCTTC 4 cut(s) 293, 929, 1017, 1055
Eco130I CCWWGG 2 cut(s) 540, 622
Eco147I AGGCCT 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 1067
Eco47I GGWCC 1 cut(s) 537
Eco88I CYCGRG 1 cut(s) 310
EcoRI GAATTC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 690
EcoT14I CCWWGG 2 cut(s) 540, 622
EcoT22I ATGCAT 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 1067
ErhI CCWWGG 2 cut(s) 540, 622
FaeI CATG 6 cut(s) 97, 864, 1112, 1193, 1288, 1295
FalI AAGNNNNNCTT 6 cut(s) 290, 322, 412, 444, 908, 940
FaqI GGGAC 2 cut(s) 41, 965
FatI CATG 6 cut(s) 93, 860, 1108, 1189, 1284, 1291
FauNDI CATATG 1 cut(s) 238
Fnu4HI GCNGC 3 cut(s) 148, 777, 1280
FokI GGATG 1 cut(s) 1264
FriOI GRGCYC 1 cut(s) 1067
Fsp4HI GCNGC 3 cut(s) 148, 777, 1280
FspBI CTAG 5 cut(s) 294, 593, 716, 930, 998
GluI GCNGC 3 cut(s) 148, 777, 1280
GsaI CCCAGC 1 cut(s) 1031
HaeIII GGCC 3 cut(s) 168, 332, 470
HapII CCGG 2 cut(s) 1068, 1220
HgaI GACGC 1 cut(s) 1202
Hin1II CATG 6 cut(s) 97, 864, 1112, 1193, 1288, 1295
HincII GTYRAC 2 cut(s) 802, 1180
HindII GTYRAC 2 cut(s) 802, 1180
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 7 cut(s) 48, 440, 653, 905, 948, 1032, 1037
HpaI GTTAAC 1 cut(s) 1180
HpaII CCGG 2 cut(s) 1068, 1220
HphI GGTGA 2 cut(s) 608, 718
Hpy166II GTNNAC 3 cut(s) 619, 802, 1180
Hpy188I TCNGA 8 cut(s) 20, 78, 88, 197, 649, 947, 1012, 1260
Hpy188III TCNNGA 5 cut(s) 310, 312, 916, 1041, 1292
Hpy8I GTNNAC 3 cut(s) 619, 802, 1180
HpyAV CCTTC 6 cut(s) 31, 158, 256, 322, 478, 1234
HpyCH4III ACNGT 3 cut(s) 532, 767, 818
HpyCH4V TGCA 9 cut(s) 275, 338, 371, 562, 619, 785, 797, 1108, 1118
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 782, 1071, 1084
HpyF3I CTNAG 6 cut(s) 9, 143, 612, 702, 791, 1079
Hsp92II CATG 6 cut(s) 97, 864, 1112, 1193, 1288, 1295
KspAI GTTAAC 1 cut(s) 1180
Kzo9I GATC 3 cut(s) 175, 190, 1288
LguI GCTCTTC 3 cut(s) 293, 1017, 1055
LmnI GCTCC 2 cut(s) 432, 773
Lsp1109I GCAGC 2 cut(s) 788, 1291
LweI GCATC 3 cut(s) 232, 272, 598
MabI ACCWGGT 1 cut(s) 690
MaeI CTAG 5 cut(s) 294, 593, 716, 930, 998
MaeIII GTNAC 3 cut(s) 352, 868, 1163
MalI GATC 3 cut(s) 177, 192, 1290
MboI GATC 3 cut(s) 175, 190, 1288
MboII GAAGA 8 cut(s) 91, 148, 298, 310, 916, 1034, 1072, 1277
MfeI CAATTG 1 cut(s) 780
MflI RGATCY 2 cut(s) 175, 190
MhlI GDGCHC 2 cut(s) 621, 1067
MlsI TGGCCA 1 cut(s) 470
MluCI AATT 5 cut(s) 82, 207, 381, 445, 780
MluNI TGGCCA 1 cut(s) 470
MlyI GAGTC 4 cut(s) 42, 899, 957, 1031
MmeI TCCRAC 1 cut(s) 1131
Mox20I TGGCCA 1 cut(s) 470
Mph1103I ATGCAT 1 cut(s) 340
MroXI GAANNNNTTC 2 cut(s) 302, 923
MscI TGGCCA 1 cut(s) 470
MseI TTAA 2 cut(s) 552, 1179
Msp20I TGGCCA 1 cut(s) 470
MspI CCGG 2 cut(s) 1068, 1220
MspR9I CCNGG 2 cut(s) 692, 1068
MunI CAATTG 1 cut(s) 780
Mva1269I GAATGC 1 cut(s) 658
MvaI CCWGG 1 cut(s) 692
MvnI CGCG 1 cut(s) 897
MwoI GCNNNNNNNGC 4 cut(s) 117, 782, 1071, 1084
NciI CCSGG 1 cut(s) 1068
NdeI CATATG 1 cut(s) 238
NdeII GATC 3 cut(s) 175, 190, 1288
NlaIII CATG 6 cut(s) 97, 864, 1112, 1193, 1288, 1295
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 2 cut(s) 352, 1163
NsiI ATGCAT 1 cut(s) 340
PaeR7I CTCGAG 1 cut(s) 310
PagI TCATGA 1 cut(s) 1291
PceI AGGCCT 1 cut(s) 168
PciSI GCTCTTC 3 cut(s) 293, 1017, 1055
PctI GAATGC 1 cut(s) 658
PdmI GAANNNNTTC 2 cut(s) 302, 923
PfeI GAWTC 3 cut(s) 440, 653, 1032
PkrI GCNGC 3 cut(s) 149, 778, 1281
PleI GAGTC 4 cut(s) 42, 899, 956, 1031
PpsI GAGTC 4 cut(s) 42, 899, 956, 1031
Psp6I CCWGG 1 cut(s) 690
PspFI CCCAGC 1 cut(s) 1027
PspGI CCWGG 1 cut(s) 690
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 537
PsuI RGATCY 2 cut(s) 175, 190
RsaI GTAC 4 cut(s) 203, 347, 529, 632
RsaNI GTAC 4 cut(s) 202, 346, 528, 631
SapI GCTCTTC 3 cut(s) 293, 1017, 1055
SaqAI TTAA 2 cut(s) 552, 1179
SatI GCNGC 3 cut(s) 148, 777, 1280
Sau3AI GATC 3 cut(s) 175, 190, 1288
Sau96I GGNCC 1 cut(s) 537
SchI GAGTC 4 cut(s) 42, 899, 957, 1031
ScrFI CCNGG 2 cut(s) 692, 1068
SduI GDGCHC 2 cut(s) 621, 1067
SexAI ACCWGGT 1 cut(s) 690
SfaNI GCATC 3 cut(s) 232, 272, 598
Sfr274I CTCGAG 1 cut(s) 310
SinI GGWCC 1 cut(s) 537
SlaI CTCGAG 1 cut(s) 310
SmlI CTYRAG 3 cut(s) 228, 310, 1199
SmoI CTYRAG 3 cut(s) 228, 310, 1199
SpeI ACTAGT 1 cut(s) 715
Sse9I AATT 5 cut(s) 82, 207, 381, 445, 780
SseBI AGGCCT 1 cut(s) 168
SsiI CCGC 2 cut(s) 41, 147
SspMI CTAG 5 cut(s) 294, 593, 716, 930, 998
StuI AGGCCT 1 cut(s) 168
StyD4I CCNGG 2 cut(s) 690, 1066
StyI CCWWGG 2 cut(s) 540, 622
TaaI ACNGT 3 cut(s) 532, 767, 818
TaqI TCGA 5 cut(s) 183, 311, 443, 1035, 1049
TaqII GACCGA 1 cut(s) 525
TasI AATT 5 cut(s) 82, 207, 381, 445, 780
TatI WGTACW 1 cut(s) 201
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 3 cut(s) 440, 653, 1032
Tru1I TTAA 2 cut(s) 552, 1179
Tru9I TTAA 2 cut(s) 552, 1179
TscAI CASTG 3 cut(s) 685, 799, 1179
TseFI GTSAC 2 cut(s) 352, 1163
TseI GCWGC 2 cut(s) 776, 1279
Tsp45I GTSAC 2 cut(s) 352, 1163
TspGWI ACGGA 1 cut(s) 231
TspRI CASTG 3 cut(s) 685, 799, 1179
VneI GTGCAC 1 cut(s) 617
VpaK11BI GGWCC 1 cut(s) 537
XapI RAATTY 2 cut(s) 82, 381
XhoI CTCGAG 1 cut(s) 310
XmnI GAANNNNTTC 2 cut(s) 302, 923
XspI CTAG 5 cut(s) 294, 593, 716, 930, 998
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.