Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Reverse (-)

60505541 .. 60509306

Gene Structure 3766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0450000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2355 bp

ATGAAGCCAACTGAAGAAGAAGAAGAACAAGGCTTCTTTCTATTCATCATCATCTTCCCCAAGATGCTGTTATTTCTTCGCACTCTGTTCCACACAAGTTGCAGAGTCTCCTCCCTTCGAGTAAGACCTAAATACCCATCGTCTAATTCCTGCTTTATCAATGCATCATCATCACTATCATCATCGCATGGTTCTCTCATAGCTTCTCCTTTGGTTTGGTTCACCAGTTTCTTCTGTATTATTCGCTTCCCATTTGTCACTAAATCCAATCCTGATATGGTTCAAGAAAACTTAAATGTAGAATCTTTGAGTCGAATTGTTCAGCAGGACTTTTGGGACGACCCCAGAATTGTTAGTGTGTTTGGTTCGGCATTGGCGCCGATTTGGGTGTCAAGGTTTTTGGTGGAACTGAGAAAAGATCCCAACTTGGCATTCAAGTTGTTCAAATGGGCGAAAACCCGGACCGGGTTTTGCCACACTACTGAGTCTTATTGTATTTTGGTTCACATACTTTTTGTTGGTAGAATGTATATTGATGCCCATGAGGTTATTAGAGAGTTAGTGTTGTTGAGCCGGGGGTTGCCGGGTTTTGATGTGTTTGATGGGCTGTGGGAGACCAGGAATGTTTGTCGTCCGGGGTTTGGAGTGTTTGATGCCTTGTTTAGTGTCTTGGTTGAGCTAGGAATGCTTGAGAAAGCAAGTGAGTGCTTCTTGAGGATGAGGAAGTGTAGAGTTTTGCCGAAAGTGCGATCTTGTAATGCCCTTTTGCACGGGCTTTCGAAGTCAGGGAAGGGGAATTTGTCAAGGCAGTTTTTTAAGGATATGCTTGGGGCTGGGATTTCCCCTTCTGTTTTCACATTCAATATAATGATTGGATATACGTGCAAAGAAGGCGATTTGGAAACCGCAAGAAGCTTGTTTGCACAAATGAAACAGTTGGGTCTTACACCTGATATTGTGACATATAATTCTCTTATTGACGGATATGGAAAGGTTGGATTATTAGATGATTCAGTTTGCATATTTGAAGAAATGAAGGATGTAGGTTGTGAACCTGATCTAATAACATACAATGCTTTGATTAATTGTTTTTGTAAATTTGAAAAAATGCCTCAAGCTTTCAATTTTCTCCGCGAGATGATGAGTAATGGCTTGAAACCGAATGTCATAACGTATAGCACATTGATTGATGCCTTCTGTAAGGAAGGGATGATGCAAGAGGCAATTAAGATTTTTATAGACATGAAACGAGTTGGTCTTTCAGCTAATGAGTTCACCTATACTTCTTTGATTGATGCAAGTTGTAAAGCTGGAAATTTGAGCCAAGCACTGAAGTTCAGAAATGAGATGTTAGAGGCAGGAGTTAGCTTCAATATTGTAACTTATACGGCTCTACTGGATGGGCTGTGTGAAAATGGGAAGATGGAGGAAGCAGAAGAAGTTTTTAGGGAGGTGCTAAACTCTGGAATAATTCCTAACCAGGAAATATGTACCGCCCTTGTTCATGGGTATGTTAAGACTAAGAAGATGGAGAATGCTACAGAATTCTTGAAGGATATCAAGGGGAAAGGCTTTAAACCAGATTTGTTACTTTATGGAACCATCATTTGGGTCCTTTGCTCTCAAAATAAGGTTGAAGAGGCTGAGCTTGTAATCAGTGAAATCAAGGATTGTGGTTTAACTGCAAATCATTTCATTTACACAACACTTATGGATGCTTATTTCAAGAAAGGAAACACCAATGAGGCACTCAATGTTTTACAGCGAATGCTGGACAACAATATTGAGGTTAGTGTGGTAACATATTGTGCACTAATTGATGGTTTGTGCAAAAAGGGGTTGCTCCAAGAGGCCATTACTTATTTTAGGACGATGTCCAACATTGGCTTGCAACCCAATGTTGCAGTTTTTACGGCCTTAATTGATGGTCTTTGTAAAGGTAGTTGCATTGAAGCAGCTAAGGAGCTGTTTAATGAAATGCTAGACAAGGGTATGATTCCAGATAAAGCTGCTTACACCACTCTAATGGATGGAAACTTAAAGCATGGAAATCTTGAGGAAGCTTTGAGCATGCACAGGAGAATGAAAGAAATTGATATGGAGCTTGACCTGCATGCATATACTTCCTTGATTTGGGGGCTTTCTCACCTTGGTCAGATGCAACAAGCAAAAGCATTCCTTGATGAGATGATTGGGAAGGGTATAATTCCTGATGAGATTCTCATTGTTTGTCTTGTAAGAAAATACTATGAGCTAGGGAATGTGGATGAAGCCATCAAGTTGCAGACTGAATGGCAAAACAGGGGTCTAAGAACTGGAACTTCTAATTTTGTGTTTCCTAATGCAAGAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

784

Amino Acids

88.44

Weight (kDa)

5.97

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	247 - 291	1e-09	PPR repeat family
PPR_1	PF12854	279 - 311	1.8e-07	PPR repeat
PPR_2	PF13041	282 - 331	1.9e-16	PPR repeat family
PPR_3	PF13812	305 - 364	6.2e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	314 - 346	7.9e-10	PPR repeat
PPR_2	PF13041	317 - 366	1.1e-17	PPR repeat family
PPR	PF01535	320 - 350	2.5e-08	PPR repeat
PPR_long	PF17177	336 - 439	2.3e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	349 - 380	1.4e-10	PPR repeat
PPR_2	PF13041	352 - 401	6.1e-18	PPR repeat family
PPR	PF01535	355 - 385	2.4e-06	PPR repeat
PPR_3	PF13812	377 - 433	1.7e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	383 - 416	1.8e-13	PPR repeat
PPR_2	PF13041	389 - 436	2.4e-16	PPR repeat family
PPR	PF01535	390 - 419	4.1e-09	PPR repeat
PPR_long	PF17177	406 - 484	1.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	419 - 450	3.3e-09	PPR repeat
PPR	PF01535	425 - 455	2e-06	PPR repeat
PPR_2	PF13041	427 - 470	2.2e-12	PPR repeat family
PPR_long	PF17177	440 - 601	1.5e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	448 - 493	2.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	454 - 484	4.6e-10	PPR repeat
PPR_2	PF13041	458 - 494	6.8e-09	PPR repeat family
PPR	PF01535	460 - 490	2.7e-08	PPR repeat
PPR_3	PF13812	482 - 538	4.9e-06	Pentatricopeptide repeat domain
PPR_3	PF13812	551 - 606	1e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	563 - 611	1.4e-13	PPR repeat family
PPR	PF01535	566 - 595	5.7e-06	PPR repeat
PPR_long	PF17177	577 - 731	7.5e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	588 - 642	9.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	594 - 625	3.2e-08	PPR repeat
PPR_2	PF13041	598 - 646	2.8e-12	PPR repeat family
PPR	PF01535	600 - 629	5.5e-06	PPR repeat
PPR_1	PF12854	629 - 660	4.5e-07	PPR repeat
PPR_2	PF13041	632 - 678	4.3e-12	PPR repeat family
PPR	PF01535	636 - 664	3.9e-06	PPR repeat
PPR_2	PF13041	667 - 715	1.6e-07	PPR repeat family
PPR	PF01535	671 - 698	7.2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2118
AccB1I	GGYRCC	1 cut(s)	376
AccB7I	CCANNNNNTGG	1 cut(s)	1608
AccII	CGCG	1 cut(s)	1134
AciI	CCGC	3 cut(s)	906, 1132, 1494
AclWI	GGATC	1 cut(s)	413
AcsI	RAATTY	4 cut(s)	796, 1097, 1315, 1544
AcuI	CTGAAG	2 cut(s)	33, 1352
AcyI	GRCGYC	1 cut(s)	377
AfaI	GTAC	1 cut(s)	1492
AfiI	CCNNNNNNNGG	4 cut(s)	465, 641, 1608, 2133
AjnI	CCWGG	2 cut(s)	617, 1479
AjuI	GAANNNNNNNTTGG	4 cut(s)	416, 448, 1591, 1623
Alw21I	GWGCWC	1 cut(s)	1813
Alw26I	GTCTC	2 cut(s)	112, 608
Alw44I	GTGCAC	1 cut(s)	1809
AlwI	GGATC	1 cut(s)	413
AoxI	GGCC	2 cut(s)	1851, 1914
ApaLI	GTGCAC	1 cut(s)	1809
ApeKI	GCWGC	2 cut(s)	1955, 2009
ApoI	RAATTY	4 cut(s)	796, 1097, 1315, 1544
ArsI	GACNNNNNNTTYG	2 cut(s)	2290, 2322
AseI	ATTAAT	1 cut(s)	1083
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	2 cut(s)	462, 1612
AsuC2I	CCSGG	5 cut(s)	460, 466, 575, 585, 636
AsuHPI	GGTGA	3 cut(s)	214, 1267, 2138
AsuII	TTCGAA	1 cut(s)	779
AvaII	GGWCC	2 cut(s)	462, 1612
BaeGI	GKGCMC	1 cut(s)	1813
BanI	GGYRCC	1 cut(s)	376
Bbv12I	GWGCWC	1 cut(s)	1813
BbvI	GCAGC	2 cut(s)	1967, 1996
BceAI	ACGGC	2 cut(s)	1404, 1929
BciT130I	CCWGG	2 cut(s)	619, 1481
BcnI	CCSGG	5 cut(s)	460, 466, 575, 585, 636
BcoDI	GTCTC	2 cut(s)	112, 608
BfaI	CTAG	3 cut(s)	680, 1982, 2255
BfmI	CTRYAG	1 cut(s)	1539
BfoI	RGCGCY	1 cut(s)	380
BfuAI	ACCTGC	1 cut(s)	2118
BisI	GCNGC	2 cut(s)	1956, 2010
BlpI	GCTNAGC	1 cut(s)	1644
BlsI	GCNGC	2 cut(s)	1957, 2011
Bme1390I	CCNGG	7 cut(s)	460, 466, 575, 585, 619, 636, 1481
Bme18I	GGWCC	2 cut(s)	462, 1612
BmgT120I	GGNCC	2 cut(s)	462, 1612
BmiI	GGNNCC	3 cut(s)	378, 1600, 1613
BmrFI	CCNGG	7 cut(s)	460, 466, 575, 585, 619, 636, 1481
BmsI	GCATC	9 cut(s)	54, 173, 526, 643, 1180, 1203, 1285, 1705, 2148
Bpu10I	CCTNAGC	1 cut(s)	1959
Bpu1102I	GCTNAGC	1 cut(s)	1644
Bpu14I	TTCGAA	1 cut(s)	779
BpuEI	CTTGAG	4 cut(s)	710, 733, 1098, 2075
BpuMI	CCSGG	5 cut(s)	460, 466, 575, 585, 636
BsaAI	YACGTR	1 cut(s)	882
BsaHI	GRCGYC	1 cut(s)	377
BsaI	GGTCTC	1 cut(s)	608
BsaJI	CCNNGG	3 cut(s)	574, 635, 2149
Bsc4I	CCNNNNNNNGG	4 cut(s)	465, 641, 1608, 2133
Bse1I	ACTGG	3 cut(s)	225, 1401, 2320
BseBI	CCWGG	2 cut(s)	619, 1481
BseDI	CCNNGG	3 cut(s)	574, 635, 2149
BseGI	GGATG	7 cut(s)	723, 1045, 1215, 1405, 1720, 2035, 2272
BseLI	CCNNNNNNNGG	4 cut(s)	465, 641, 1608, 2133
BseMII	CTCAG	3 cut(s)	401, 474, 1635
BseNI	ACTGG	3 cut(s)	225, 1401, 2320
BseRI	GAGGAG	1 cut(s)	100
BseSI	GKGCMC	1 cut(s)	1813
BseXI	GCAGC	2 cut(s)	1967, 1996
BseYI	CCCAGC	1 cut(s)	833
Bsh1236I	CGCG	1 cut(s)	1134
BshFI	GGCC	2 cut(s)	1853, 1916
BshNI	GGYRCC	1 cut(s)	376
BsiHKAI	GWGCWC	1 cut(s)	1813
BsiSI	CCGG	5 cut(s)	460, 465, 574, 584, 635
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	4 cut(s)	465, 641, 1608, 2133
BsmAI	GTCTC	2 cut(s)	112, 608
BsmFI	GGGAC	1 cut(s)	350
BsmI	GAATGC	5 cut(s)	431, 690, 1540, 1773, 2174
BsnI	GGCC	2 cut(s)	1853, 1916
Bso31I	GGTCTC	1 cut(s)	608
Bsp119I	TTCGAA	1 cut(s)	779
Bsp1286I	GDGCHC	1 cut(s)	1813
Bsp143I	GATC	3 cut(s)	418, 749, 1057
Bsp1720I	GCTNAGC	1 cut(s)	1644
BspACI	CCGC	3 cut(s)	906, 1132, 1494
BspANI	GGCC	2 cut(s)	1853, 1916
BspCNI	CTCAG	3 cut(s)	402, 475, 1636
BspFNI	CGCG	1 cut(s)	1134
BspLI	GGNNCC	3 cut(s)	378, 1600, 1613
BspMI	ACCTGC	1 cut(s)	2118
BspPI	GGATC	1 cut(s)	413
BspT104I	TTCGAA	1 cut(s)	779
BspT107I	GGYRCC	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	608
BsrI	ACTGG	3 cut(s)	225, 1401, 2320
BssECI	CCNNGG	3 cut(s)	574, 635, 2149
BssMI	GATC	3 cut(s)	418, 749, 1057
BssNI	GRCGYC	1 cut(s)	377
BssT1I	CCWWGG	1 cut(s)	2149
Bst2UI	CCWGG	2 cut(s)	619, 1481
Bst4CI	ACNGT	1 cut(s)	936
Bst6I	CTCTTC	1 cut(s)	1632
BstACI	GRCGYC	1 cut(s)	377
BstBAI	YACGTR	1 cut(s)	882
BstBI	TTCGAA	1 cut(s)	779
BstC8I	GCNNGC	3 cut(s)	1889, 2072, 2115
BstDEI	CTNAG	6 cut(s)	410, 483, 1521, 1644, 1959, 2309
BstF5I	GGATG	7 cut(s)	723, 1045, 1215, 1405, 1720, 2035, 2272
BstFNI	CGCG	1 cut(s)	1134
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	3 cut(s)	421, 752, 1060
BstMAI	GTCTC	2 cut(s)	112, 608
BstMBI	GATC	3 cut(s)	418, 749, 1057
BstMWI	GCNNNNNNNGC	4 cut(s)	685, 745, 891, 2110
BstNI	CCWGG	2 cut(s)	619, 1481
BstNSI	RCATGY	2 cut(s)	2074, 2117
BstSCI	CCNGG	7 cut(s)	458, 464, 573, 583, 617, 634, 1479
BstSFI	CTRYAG	1 cut(s)	1539
BstSLI	GKGCMC	1 cut(s)	1813
BstUI	CGCG	1 cut(s)	1134
BstV1I	GCAGC	2 cut(s)	1967, 1996
BstX2I	RGATCY	1 cut(s)	418
BstXI	CCANNNNNNTGG	1 cut(s)	2026
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	2 cut(s)	1853, 1916
BtgZI	GCGATG	1 cut(s)	168
BtsCI	GGATG	7 cut(s)	723, 1045, 1215, 1405, 1720, 2035, 2272
BtsIMutI	CAGTG	2 cut(s)	1328, 1663
BveI	ACCTGC	1 cut(s)	2118
Cac8I	GCNNGC	3 cut(s)	1889, 2072, 2115
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	2 cut(s)	462, 1612
CpoI	CGGWCCG	1 cut(s)	462
Csp6I	GTAC	1 cut(s)	1491
CspCI	CAANNNNNGTGG	4 cut(s)	80, 115, 1654, 1689
CspI	CGGWCCG	1 cut(s)	462
CviAII	CATG	7 cut(s)	188, 542, 1243, 1505, 2045, 2071, 2114
CviQI	GTAC	1 cut(s)	1491
DdeI	CTNAG	6 cut(s)	410, 483, 1521, 1644, 1959, 2309
DinI	GGCGCC	1 cut(s)	378
DpnI	GATC	3 cut(s)	420, 751, 1059
DpnII	GATC	3 cut(s)	418, 749, 1057
DraI	TTTAAA	1 cut(s)	1576
Eam1104I	CTCTTC	1 cut(s)	1632
EarI	CTCTTC	1 cut(s)	1632
Eco130I	CCWWGG	1 cut(s)	2149
Eco31I	GGTCTC	1 cut(s)	608
Eco32I	GATATC	1 cut(s)	1558
Eco47I	GGWCC	2 cut(s)	462, 1612
Eco57I	CTGAAG	2 cut(s)	33, 1352
EcoO109I	RGGNCCY	1 cut(s)	1612
EcoRI	GAATTC	1 cut(s)	1544
EcoRII	CCWGG	2 cut(s)	617, 1479
EcoRV	GATATC	1 cut(s)	1558
EcoT14I	CCWWGG	1 cut(s)	2149
EcoT22I	ATGCAT	2 cut(s)	166, 2119
EgeI	GGCGCC	1 cut(s)	378
EheI	GGCGCC	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	2149
FaeI	CATG	7 cut(s)	191, 545, 1246, 1508, 2048, 2074, 2117
FalI	AAGNNNNNCTT	2 cut(s)	2163, 2195
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	7 cut(s)	187, 541, 1242, 1504, 2044, 2070, 2113
Fnu4HI	GCNGC	2 cut(s)	1956, 2010
FokI	GGATG	7 cut(s)	730, 1052, 1222, 1412, 1727, 2042, 2279
Fsp4HI	GCNGC	2 cut(s)	1956, 2010
FspBI	CTAG	3 cut(s)	680, 1982, 2255
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	2 cut(s)	1956, 2010
GsaI	CCCAGC	1 cut(s)	837
HaeII	RGCGCY	1 cut(s)	380
HaeIII	GGCC	2 cut(s)	1853, 1916
HapII	CCGG	5 cut(s)	460, 465, 574, 584, 635
HhaI	GCGC	1 cut(s)	379
Hin1I	GRCGYC	1 cut(s)	377
Hin1II	CATG	7 cut(s)	191, 545, 1246, 1508, 2048, 2074, 2117
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HindIII	AAGCTT	3 cut(s)	913, 1116, 2061
HinfI	GANTC	7 cut(s)	105, 302, 310, 485, 1010, 1996, 2218
HpaII	CCGG	5 cut(s)	460, 465, 574, 584, 635
HphI	GGTGA	3 cut(s)	214, 1267, 2138
Hpy166II	GTNNAC	5 cut(s)	222, 505, 1052, 1275, 1811
Hpy188I	TCNGA	2 cut(s)	1340, 2157
Hpy188III	TCNNGA	9 cut(s)	272, 284, 712, 1464, 1549, 1726, 2000, 2054, 2210
Hpy8I	GTNNAC	5 cut(s)	222, 505, 1052, 1275, 1811
HpyAV	CCTTC	9 cut(s)	125, 784, 855, 884, 1030, 1199, 1204, 1546, 2191
HpyCH4III	ACNGT	1 cut(s)	936
HpyCH4IV	ACGT	2 cut(s)	881, 1172
HpyF10VI	GCNNNNNNNGC	4 cut(s)	685, 745, 891, 2110
HpyF3I	CTNAG	6 cut(s)	410, 483, 1521, 1644, 1959, 2309
HpySE526I	ACGT	2 cut(s)	881, 1172
Hsp92I	GRCGYC	1 cut(s)	377
Hsp92II	CATG	7 cut(s)	191, 545, 1246, 1508, 2048, 2074, 2117
HspAI	GCGC	1 cut(s)	377
KasI	GGCGCC	1 cut(s)	376
Kzo9I	GATC	3 cut(s)	418, 749, 1057
LmnI	GCTCC	3 cut(s)	1848, 1963, 2101
Lsp1109I	GCAGC	2 cut(s)	1967, 1996
LweI	GCATC	9 cut(s)	54, 173, 526, 643, 1180, 1203, 1285, 1705, 2148
MaeI	CTAG	3 cut(s)	680, 1982, 2255
MaeII	ACGT	2 cut(s)	881, 1172
MaeIII	GTNAC	5 cut(s)	256, 958, 1378, 1587, 1798
MalI	GATC	3 cut(s)	420, 751, 1059
MboI	GATC	3 cut(s)	418, 749, 1057
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	1813
Mly113I	GGCGCC	1 cut(s)	377
MlyI	GAGTC	3 cut(s)	114, 319, 494
MmeI	TCCRAC	2 cut(s)	976, 1902
Mph1103I	ATGCAT	2 cut(s)	166, 2119
MslI	CAYNNNNRTG	2 cut(s)	1509, 2024
MspI	CCGG	5 cut(s)	460, 465, 574, 584, 635
MspR9I	CCNGG	7 cut(s)	460, 466, 575, 585, 619, 636, 1481
Mva1269I	GAATGC	5 cut(s)	431, 690, 1540, 1773, 2174
MvaI	CCWGG	2 cut(s)	619, 1481
MvnI	CGCG	1 cut(s)	1134
MwoI	GCNNNNNNNGC	4 cut(s)	685, 745, 891, 2110
NarI	GGCGCC	1 cut(s)	377
NciI	CCSGG	5 cut(s)	460, 466, 575, 585, 636
NdeII	GATC	3 cut(s)	418, 749, 1057
NlaIII	CATG	7 cut(s)	191, 545, 1246, 1508, 2048, 2074, 2117
NlaIV	GGNNCC	3 cut(s)	378, 1600, 1613
NmuCI	GTSAC	2 cut(s)	256, 958
NsiI	ATGCAT	2 cut(s)	166, 2119
NspI	RCATGY	2 cut(s)	2074, 2117
NspV	TTCGAA	1 cut(s)	779
PaeI	GCATGC	2 cut(s)	2074, 2117
PctI	GAATGC	5 cut(s)	431, 690, 1540, 1773, 2174
PfeI	GAWTC	4 cut(s)	302, 1010, 1996, 2218
PflFI	GACNNNGTC	1 cut(s)	1873
PflMI	CCANNNNNTGG	1 cut(s)	1608
PkrI	GCNGC	2 cut(s)	1957, 2011
PleI	GAGTC	3 cut(s)	113, 318, 493
PluTI	GGCGCC	1 cut(s)	380
PpsI	GAGTC	3 cut(s)	113, 318, 493
Ppu21I	YACGTR	1 cut(s)	882
PpuMI	RGGWCCY	1 cut(s)	1612
PshBI	ATTAAT	1 cut(s)	1083
Psp5II	RGGWCCY	1 cut(s)	1612
Psp6I	CCWGG	2 cut(s)	617, 1479
PspFI	CCCAGC	1 cut(s)	833
PspGI	CCWGG	2 cut(s)	617, 1479
PspN4I	GGNNCC	3 cut(s)	378, 1600, 1613
PspPI	GGNCC	2 cut(s)	462, 1612
PspPPI	RGGWCCY	1 cut(s)	1612
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	1873
RsaI	GTAC	1 cut(s)	1492
RsaNI	GTAC	1 cut(s)	1491
RseI	CAYNNNNRTG	2 cut(s)	1509, 2024
Rsr2I	CGGWCCG	1 cut(s)	462
RsrII	CGGWCCG	1 cut(s)	462
SatI	GCNGC	2 cut(s)	1956, 2010
Sau3AI	GATC	3 cut(s)	418, 749, 1057
Sau96I	GGNCC	2 cut(s)	462, 1612
SchI	GAGTC	3 cut(s)	114, 319, 494
ScrFI	CCNGG	7 cut(s)	460, 466, 575, 585, 619, 636, 1481
SduI	GDGCHC	1 cut(s)	1813
SfaNI	GCATC	9 cut(s)	54, 173, 526, 643, 1180, 1203, 1285, 1705, 2148
SfcI	CTRYAG	1 cut(s)	1539
SfoI	GGCGCC	1 cut(s)	378
SfuI	TTCGAA	1 cut(s)	779
SinI	GGWCC	2 cut(s)	462, 1612
SmiMI	CAYNNNNRTG	2 cut(s)	1509, 2024
SmlI	CTYRAG	4 cut(s)	689, 712, 1113, 2054
SmoI	CTYRAG	4 cut(s)	689, 712, 1113, 2054
SphI	GCATGC	2 cut(s)	2074, 2117
SsiI	CCGC	3 cut(s)	906, 1132, 1494
SspDI	GGCGCC	1 cut(s)	376
SspI	AATATT	2 cut(s)	1375, 1783
SspMI	CTAG	3 cut(s)	680, 1982, 2255
StyD4I	CCNGG	7 cut(s)	458, 464, 573, 583, 617, 634, 1479
StyI	CCWWGG	1 cut(s)	2149
TaaI	ACNGT	1 cut(s)	936
TaiI	ACGT	2 cut(s)	884, 1175
TaqI	TCGA	3 cut(s)	118, 313, 779
TfiI	GAWTC	4 cut(s)	302, 1010, 1996, 2218
TscAI	CASTG	2 cut(s)	1335, 1663
TseFI	GTSAC	2 cut(s)	256, 958
TseI	GCWGC	2 cut(s)	1955, 2009
Tsp45I	GTSAC	2 cut(s)	256, 958
TspGWI	ACGGA	1 cut(s)	996
TspRI	CASTG	2 cut(s)	1335, 1663
Tth111I	GACNNNGTC	1 cut(s)	1873
Van91I	CCANNNNNTGG	1 cut(s)	1608
VneI	GTGCAC	1 cut(s)	1809
VpaK11BI	GGWCC	2 cut(s)	462, 1612
VspI	ATTAAT	1 cut(s)	1083
XapI	RAATTY	4 cut(s)	796, 1097, 1315, 1544
XceI	RCATGY	2 cut(s)	2074, 2117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XspI	CTAG	3 cut(s)	680, 1982, 2255
Zsp2I	ATGCAT	2 cut(s)	166, 2119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.