Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Reverse (-)

4732005 .. 4732668

Gene Structure 664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGATGCGTACTCAGTGCTTCCTCCTTGCGCTCTTTGCTTTCCTCGTTCCTCTGGTCGCATCTGCTTTCAGAGGTCCATCTGAAGATCAGATTGTAGGAGCTTGGGAAATCATCAAGGATATCGGCGACCCGCATGTGCAAGAGATCGCCAAGTGGGGGGTCTCGGAGTACAACCGGCAATCCCACAAGGGGTTGGTGTTCCAGAGAGTGATTTCGGGCCAGGAACAATCAGTAGCTGGATGGAATTATAAGCTTATCACTAGTATCAAGGATGGATCCTCCATTGTGAACTATGAGGTCTACGTCTATGAGAGGGTTTGGGAGAATTTTAGACAACTGATCTCCTTTACTAGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

120

Amino Acids

13.73

Weight (kDa)

7.87

Isoelectric Point (pI)

29.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	38 - 117	1.7e-27	Aspartic acid proteinase inhibitor
Cystatin	PF00031	39 - 101	7.6e-10	Cystatin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AccI	GTMKAC	1 cut(s)	300
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	2 cut(s)	270, 283
AcsI	RAATTY	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	2 cut(s)	10, 170
AfiI	CCNNNNNNNGG	2 cut(s)	156, 189
AhlI	ACTAGT	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	3 cut(s)	101, 236, 253
AluI	AGCT	3 cut(s)	101, 236, 253
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	2 cut(s)	270, 283
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	325
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	2 cut(s)	74, 217
AvaII	GGWCC	1 cut(s)	74
BamHI	GGATCC	1 cut(s)	275
BccI	CCATC	3 cut(s)	85, 234, 266
BciT130I	CCWGG	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	166
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	2 cut(s)	261, 351
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	74, 217
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 189
Bse118I	RCCGGY	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	221
BseGI	GGATG	2 cut(s)	245, 277
BseLI	CCNNNNNNNGG	2 cut(s)	156, 189
BseMII	CTCAG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	175
BslI	CCNNNNNNNGG	2 cut(s)	156, 189
BsmAI	GTCTC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	219
Bso31I	GGTCTC	1 cut(s)	166
Bsp143I	GATC	4 cut(s)	85, 144, 275, 339
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	2 cut(s)	270, 283
BspTNI	GGTCTC	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	174
BssAI	RCCGGY	1 cut(s)	174
BssMI	GATC	4 cut(s)	85, 144, 275, 339
Bst2UI	CCWGG	1 cut(s)	221
BstDEI	CTNAG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	245, 277
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	4 cut(s)	88, 147, 278, 342
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	4 cut(s)	85, 144, 275, 339
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	245, 277
BtsIMutI	CAGTG	1 cut(s)	20
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	174
Cfr13I	GGNCC	2 cut(s)	74, 217
Csp6I	GTAC	2 cut(s)	9, 169
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	4 cut(s)	101, 219, 236, 253
CviKI_1	RGCY	4 cut(s)	101, 219, 236, 253
CviQI	GTAC	2 cut(s)	9, 169
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	4 cut(s)	87, 146, 277, 341
DpnII	GATC	4 cut(s)	85, 144, 275, 339
Eco31I	GGTCTC	1 cut(s)	166
Eco32I	GATATC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	219
EcoRV	GATATC	1 cut(s)	121
FaeI	CATG	1 cut(s)	137
FaiI	YATR	4 cut(s)	135, 249, 294, 309
FatI	CATG	1 cut(s)	133
FauI	CCCGC	1 cut(s)	138
FblI	GTMKAC	1 cut(s)	300
FokI	GGATG	2 cut(s)	252, 284
FspBI	CTAG	2 cut(s)	261, 351
GlaI	GCGC	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	1 cut(s)	175
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HindIII	AAGCTT	1 cut(s)	251
HpaII	CCGG	1 cut(s)	175
Hpy166II	GTNNAC	2 cut(s)	289, 301
Hpy188I	TCNGA	4 cut(s)	71, 82, 90, 166
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	2 cut(s)	289, 301
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	137
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	4 cut(s)	85, 144, 275, 339
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	6 cut(s)	38, 188, 206, 215, 222, 233
LweI	GCATC	1 cut(s)	68
MaeI	CTAG	2 cut(s)	261, 351
MaeII	ACGT	1 cut(s)	303
MalI	GATC	4 cut(s)	87, 146, 277, 341
MboI	GATC	4 cut(s)	85, 144, 275, 339
MboII	GAAGA	1 cut(s)	95
MflI	RGATCY	1 cut(s)	275
MluCI	AATT	2 cut(s)	244, 325
MnlI	CCTC	7 cut(s)	32, 53, 60, 65, 289, 289, 306
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	4 cut(s)	85, 144, 275, 339
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	137
PsiI	TTATAA	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	74, 217
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	275
RsaI	GTAC	2 cut(s)	10, 170
RsaNI	GTAC	2 cut(s)	9, 169
Sau3AI	GATC	4 cut(s)	85, 144, 275, 339
Sau96I	GGNCC	2 cut(s)	74, 217
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	6 cut(s)	76, 103, 238, 255, 300, 306
SfaNI	GCATC	1 cut(s)	68
SinI	GGWCC	1 cut(s)	74
SpeI	ACTAGT	1 cut(s)	260
Sse9I	AATT	2 cut(s)	244, 325
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	2 cut(s)	261, 351
StyD4I	CCNGG	1 cut(s)	219
TaiI	ACGT	1 cut(s)	306
TasI	AATT	2 cut(s)	244, 325
TatI	WGTACW	1 cut(s)	168
TscAI	CASTG	1 cut(s)	20
TspRI	CASTG	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	1 cut(s)	325
XceI	RCATGY	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	2 cut(s)	261, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.