FvH4_3g34980

Belongs to the cystatin family. Phytocystatin subfamily

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
30202682 .. 30203254
573 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34980.t1

Sequence Viewer

Length: 348 bp
ATGCATCCTCAATACATCTTTGCAGTCCTTGTTCTTCTTGTTCCCCTTGTTGTCATCGTTTCCGTCGCCGCCGAGGGAGGCTGGATACCTTTGAGTCCTAGCGATCCACGTGCGATAACAGTTGCCCAGTTCGCTATAACAGAGTACAATAAGAATACTACACAGAAGCTAGTATATCAGAGTTTGGTTTCAGCCGAGATAGCTCAAATATTAGGCACTCTTTATCACCTTACGATAGCGGCCAAGAATGAAACGTCGCCTACCTCTGTTGCAAATTATGAGGCTGGAGTTTTGGTTAGACATGGACAAGATCCGAAATTGACTGCCTTCCATATTGCTAAATGCTAG

Protein Analysis

116

Amino Acids

12.44

Weight (kDa)

6.89

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cystatin PF00031 26 - 100 2.7e-06 Cystatin domain
SQAPI PF16845 34 - 109 1.2e-13 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000425)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47550
fragaria_vesca FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 69, 239
AclWI GGATC 2 cut(s) 98, 305
AcoI YGGCCR 1 cut(s) 240
AcvI CACGTG 1 cut(s) 110
AfaI GTAC 1 cut(s) 146
AluBI AGCT 2 cut(s) 169, 203
AluI AGCT 2 cut(s) 169, 203
AlwI GGATC 2 cut(s) 98, 305
AoxI GGCC 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 218
BbrPI CACGTG 1 cut(s) 110
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciVI GTATCC 1 cut(s) 78
BfaI CTAG 3 cut(s) 99, 170, 346
BfuI GTATCC 1 cut(s) 78
BisI GCNGC 2 cut(s) 69, 240
BlsI GCNGC 2 cut(s) 70, 241
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 121
BpmI CTGGAG 1 cut(s) 306
BsaAI YACGTR 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bse1I ACTGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 4
BseNI ACTGG 1 cut(s) 127
BshFI GGCC 1 cut(s) 242
BsnI GGCC 1 cut(s) 242
Bsp143I GATC 2 cut(s) 103, 310
BspACI CCGC 2 cut(s) 69, 239
BspANI GGCC 1 cut(s) 242
BspPI GGATC 2 cut(s) 98, 305
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 2 cut(s) 103, 310
Bst4CI ACNGT 1 cut(s) 121
BstBAI YACGTR 1 cut(s) 110
BstF5I GGATG 1 cut(s) 4
BstKTI GATC 2 cut(s) 106, 313
BstMBI GATC 2 cut(s) 103, 310
BstMWI GCNNNNNNNGC 2 cut(s) 131, 200
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuI GTATCC 1 cut(s) 78
BsuRI GGCC 1 cut(s) 242
BtsCI GGATG 1 cut(s) 4
Csp6I GTAC 1 cut(s) 145
CviAII CATG 1 cut(s) 302
CviJI RGCY 6 cut(s) 81, 169, 194, 203, 242, 284
CviKI_1 RGCY 6 cut(s) 81, 169, 194, 203, 242, 284
CviQI GTAC 1 cut(s) 145
DpnI GATC 2 cut(s) 105, 312
DpnII GATC 2 cut(s) 103, 310
EaeI YGGCCR 1 cut(s) 240
Eco72I CACGTG 1 cut(s) 110
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 305
FaiI YATR 5 cut(s) 137, 175, 279, 303, 333
FatI CATG 1 cut(s) 301
Fnu4HI GCNGC 2 cut(s) 69, 240
Fsp4HI GCNGC 2 cut(s) 69, 240
FspBI CTAG 3 cut(s) 99, 170, 346
GluI GCNGC 2 cut(s) 69, 240
GsuI CTGGAG 1 cut(s) 306
HaeIII GGCC 1 cut(s) 242
Hin1II CATG 1 cut(s) 305
HinfI GANTC 1 cut(s) 94
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 2 cut(s) 180, 315
Hpy99I CGWCG 2 cut(s) 68, 259
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 2 cut(s) 109, 254
HpyCH4V TGCA 3 cut(s) 4, 23, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 200
HpySE526I ACGT 2 cut(s) 109, 254
Hsp92II CATG 1 cut(s) 305
Kzo9I GATC 2 cut(s) 103, 310
LpnPI CCDG 3 cut(s) 67, 140, 270
LweI GCATC 1 cut(s) 13
MaeI CTAG 3 cut(s) 99, 170, 346
MaeII ACGT 2 cut(s) 109, 254
MalI GATC 2 cut(s) 105, 312
MboI GATC 2 cut(s) 103, 310
MboII GAAGA 1 cut(s) 26
MflI RGATCY 1 cut(s) 310
MluCI AATT 2 cut(s) 274, 317
MlyI GAGTC 1 cut(s) 103
MnlI CCTC 5 cut(s) 18, 67, 71, 274, 274
Mph1103I ATGCAT 1 cut(s) 6
MwoI GCNNNNNNNGC 2 cut(s) 131, 200
NdeII GATC 2 cut(s) 103, 310
NlaIII CATG 1 cut(s) 305
NmeAIII GCCGAG 2 cut(s) 97, 220
NsiI ATGCAT 1 cut(s) 6
PkrI GCNGC 2 cut(s) 70, 241
PleI GAGTC 1 cut(s) 102
PmaCI CACGTG 1 cut(s) 110
PmlI CACGTG 1 cut(s) 110
PpsI GAGTC 1 cut(s) 102
Ppu21I YACGTR 1 cut(s) 110
PspCI CACGTG 1 cut(s) 110
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SatI GCNGC 2 cut(s) 69, 240
Sau3AI GATC 2 cut(s) 103, 310
SchI GAGTC 1 cut(s) 103
SetI ASST 7 cut(s) 91, 112, 171, 205, 231, 257, 266
SfaNI GCATC 1 cut(s) 13
Sse9I AATT 2 cut(s) 274, 317
SsiI CCGC 2 cut(s) 69, 239
SspI AATATT 1 cut(s) 210
SspMI CTAG 3 cut(s) 99, 170, 346
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 2 cut(s) 112, 257
TasI AATT 2 cut(s) 274, 317
TatI WGTACW 1 cut(s) 144
TauI GCSGC 2 cut(s) 71, 242
TspDTI ATGAA 1 cut(s) 264
TspGWI ACGGA 1 cut(s) 52
XspI CTAG 3 cut(s) 99, 170, 346
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.