Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Forward (+)

31851322 .. 31851939

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCGAAAGAAATCCCTGCACGAGCCAATATGGACAGTAATATCCAGGATAGCACAAGTCAATACCTAACCTTCCATATATGCCAAACCCTTTACCTTCCTGCCCGTTATGCACATCCAAACCTATATTATCTTGCCATCCCCCATTGCAGCTCATCGGTCATCAATTGTCATTCGTGGAGTGGAGCCAGTCGTAGAAACTTAAACAAATTAAAGAAAGCAACGGTCACGATGCGCCCTCACTGCCTCCTCATCCTCGCCCTCGTCCTCCTTCCTCTGGTGGCCGCTGCCGCCGACCGACGGGGCCTTATAACCGGCGGTTGGGAGCCCATAAAGAACATCAGCGACCCCCATGTGAAAGAGATTGCAGAGTTTGCGGTGTCGGAGTACAACAAGCAAGCCCAAGGCCAGAACAAGTTGGCGTTTGAGAGGGTCGTCCGGGGCGACAGCCAGGTGGTGGCGGGCATCAACTACCGGCTTGTCATTTCCGCTAAGAACAAGTCCGTGGCTGATCCCGATGTTGCCACTCCCGCGGATTACGAGGGTATTGTGTGGGAGAAGGCTTGGGAGCATTTTAAGCAGTTGATGTCATTTCATCGATTGTCAAAGCCCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

206

Amino Acids

22.99

Weight (kDa)

9.28

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	106 - 196	7.3e-15	Cystatin domain
SQAPI	PF16845	111 - 200	5.6e-31	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
AccB7I	CCANNNNNTGG	1 cut(s)	457
AccII	CGCG	1 cut(s)	533
AciI	CCGC	8 cut(s)	285, 291, 318, 377, 461, 489, 531, 533
AclWI	GGATC	1 cut(s)	506
AcoI	YGGCCR	1 cut(s)	282
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	4 cut(s)	277, 300, 321, 457
AjnI	CCWGG	2 cut(s)	45, 450
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
AlwI	GGATC	1 cut(s)	506
AoxI	GGCC	3 cut(s)	282, 304, 406
ApeKI	GCWGC	2 cut(s)	150, 287
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	330
BauI	CACGAG	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	162, 274
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	2 cut(s)	47, 452
BcnI	CCSGG	1 cut(s)	440
BfaI	CTAG	1 cut(s)	616
BisI	GCNGC	4 cut(s)	151, 285, 288, 291
BlsI	GCNGC	4 cut(s)	152, 286, 289, 292
Bme1390I	CCNGG	3 cut(s)	47, 440, 452
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	3 cut(s)	187, 305, 327
BmrFI	CCNGG	3 cut(s)	47, 440, 452
BmsI	GCATC	2 cut(s)	222, 474
BpuMI	CCSGG	1 cut(s)	440
Bsa29I	ATCGAT	1 cut(s)	598
BsaJI	CCNNGG	4 cut(s)	403, 439, 504, 531
Bsc4I	CCNNNNNNNGG	4 cut(s)	277, 300, 321, 457
Bse118I	RCCGGY	2 cut(s)	314, 474
Bse1I	ACTGG	1 cut(s)	189
Bse3DI	GCAATG	1 cut(s)	145
BseBI	CCWGG	2 cut(s)	47, 452
BseCI	ATCGAT	1 cut(s)	598
BseDI	CCNNGG	4 cut(s)	403, 439, 504, 531
BseGI	GGATG	3 cut(s)	115, 138, 252
BseLI	CCNNNNNNNGG	4 cut(s)	277, 300, 321, 457
BseMI	GCAATG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	162, 274
Bsh1236I	CGCG	1 cut(s)	533
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	3 cut(s)	284, 306, 408
BshVI	ATCGAT	1 cut(s)	598
BsiEI	CGRYCG	1 cut(s)	298
BsiSI	CCGG	3 cut(s)	315, 439, 475
BslI	CCNNNNNNNGG	4 cut(s)	277, 300, 321, 457
BsnI	GGCC	3 cut(s)	284, 306, 408
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	511
BspACI	CCGC	8 cut(s)	285, 291, 318, 377, 461, 489, 531, 533
BspANI	GGCC	3 cut(s)	284, 306, 408
BspDI	ATCGAT	1 cut(s)	598
BspFNI	CGCG	1 cut(s)	533
BspLI	GGNNCC	3 cut(s)	187, 305, 327
BspPI	GGATC	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	145
BsrFI	RCCGGY	2 cut(s)	314, 474
BsrI	ACTGG	1 cut(s)	189
BssAI	RCCGGY	2 cut(s)	314, 474
BssECI	CCNNGG	4 cut(s)	403, 439, 504, 531
BssMI	GATC	1 cut(s)	511
BssSI	CACGAG	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	403
Bst2BI	CACGAG	1 cut(s)	21
Bst2UI	CCWGG	2 cut(s)	47, 452
Bst4CI	ACNGT	2 cut(s)	38, 226
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	399, 463
BstDEI	CTNAG	1 cut(s)	492
BstDSI	CCRYGG	2 cut(s)	504, 531
BstF5I	GGATG	3 cut(s)	115, 138, 252
BstFNI	CGCG	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	1 cut(s)	514
BstMBI	GATC	1 cut(s)	511
BstMCI	CGRYCG	1 cut(s)	298
BstMWI	GCNNNNNNNGC	6 cut(s)	110, 243, 290, 374, 530, 577
BstNI	CCWGG	2 cut(s)	47, 452
BstSCI	CCNGG	3 cut(s)	45, 438, 450
BstUI	CGCG	1 cut(s)	533
BstV1I	GCAGC	2 cut(s)	162, 274
Bsu15I	ATCGAT	1 cut(s)	598
BsuRI	GGCC	3 cut(s)	284, 306, 408
BsuTUI	ATCGAT	1 cut(s)	598
BtgI	CCRYGG	2 cut(s)	504, 531
BtsCI	GGATG	3 cut(s)	115, 138, 252
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	2 cut(s)	399, 463
CfoI	GCGC	1 cut(s)	237
Cfr10I	RCCGGY	2 cut(s)	314, 474
Cfr13I	GGNCC	1 cut(s)	304
Cfr42I	CCGCGG	1 cut(s)	534
ClaI	ATCGAT	1 cut(s)	598
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	1 cut(s)	353
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	1 cut(s)	513
DpnII	GATC	1 cut(s)	511
EaeI	YGGCCR	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	403
Eco24I	GRGCYC	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRII	CCWGG	2 cut(s)	45, 450
EcoT14I	CCWWGG	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	403
FaeI	CATG	1 cut(s)	356
FaiI	YATR	9 cut(s)	32, 78, 80, 82, 111, 127, 311, 332, 354
FatI	CATG	1 cut(s)	352
FauI	CCCGC	2 cut(s)	454, 538
Fnu4HI	GCNGC	4 cut(s)	151, 285, 288, 291
FokI	GGATG	3 cut(s)	102, 125, 239
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	4 cut(s)	151, 285, 288, 291
FspBI	CTAG	1 cut(s)	616
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	4 cut(s)	151, 285, 288, 291
HaeIII	GGCC	3 cut(s)	284, 306, 408
HapII	CCGG	3 cut(s)	315, 439, 475
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	356
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HpaII	CCGG	3 cut(s)	315, 439, 475
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	2 cut(s)	229, 515
Hpy99I	CGWCG	1 cut(s)	303
HpyAV	CCTTC	4 cut(s)	82, 107, 281, 553
HpyCH4III	ACNGT	2 cut(s)	38, 226
HpyCH4V	TGCA	4 cut(s)	20, 113, 150, 368
HpyF10VI	GCNNNNNNNGC	6 cut(s)	110, 243, 290, 374, 530, 577
HpyF3I	CTNAG	1 cut(s)	492
Hsp92II	CATG	1 cut(s)	356
HspAI	GCGC	1 cut(s)	235
KspI	CCGCGG	1 cut(s)	534
Kzo9I	GATC	1 cut(s)	511
LmnI	GCTCC	3 cut(s)	185, 325, 568
Lsp1109I	GCAGC	2 cut(s)	162, 274
LweI	GCATC	2 cut(s)	222, 474
MaeI	CTAG	1 cut(s)	616
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	1 cut(s)	513
MboI	GATC	1 cut(s)	511
MfeI	CAATTG	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	2 cut(s)	166, 209
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	9 cut(s)	249, 257, 260, 266, 272, 278, 285, 423, 535
MseI	TTAA	3 cut(s)	203, 212, 576
MspA1I	CMGCKG	2 cut(s)	287, 533
MspI	CCGG	3 cut(s)	315, 439, 475
MspR9I	CCNGG	3 cut(s)	47, 440, 452
MunI	CAATTG	1 cut(s)	166
MvaI	CCWGG	2 cut(s)	47, 452
MvnI	CGCG	1 cut(s)	533
MwoI	GCNNNNNNNGC	6 cut(s)	110, 243, 290, 374, 530, 577
NciI	CCSGG	1 cut(s)	440
NdeII	GATC	1 cut(s)	511
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	3 cut(s)	187, 305, 327
NmuCI	GTSAC	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PflMI	CCANNNNNTGG	1 cut(s)	457
PfoI	TCCNGGA	1 cut(s)	45
PkrI	GCNGC	4 cut(s)	152, 286, 289, 292
PsiI	TTATAA	1 cut(s)	311
Psp6I	CCWGG	2 cut(s)	45, 450
PspGI	CCWGG	2 cut(s)	45, 450
PspN4I	GGNNCC	3 cut(s)	187, 305, 327
PspPI	GGNCC	1 cut(s)	304
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SacII	CCGCGG	1 cut(s)	534
SaqAI	TTAA	3 cut(s)	203, 212, 576
SatI	GCNGC	4 cut(s)	151, 285, 288, 291
Sau3AI	GATC	1 cut(s)	511
Sau96I	GGNCC	1 cut(s)	304
ScrFI	CCNGG	3 cut(s)	47, 440, 452
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	6 cut(s)	69, 74, 99, 126, 155, 456
SfaNI	GCATC	2 cut(s)	222, 474
Sfr303I	CCGCGG	1 cut(s)	534
SgrBI	CCGCGG	1 cut(s)	534
Sse9I	AATT	2 cut(s)	166, 209
SsiI	CCGC	8 cut(s)	285, 291, 318, 377, 461, 489, 531, 533
SspMI	CTAG	1 cut(s)	616
StyD4I	CCNGG	3 cut(s)	45, 438, 450
StyI	CCWWGG	1 cut(s)	403
TaaI	ACNGT	2 cut(s)	38, 226
TaqI	TCGA	2 cut(s)	5, 598
TaqII	GACCGA	2 cut(s)	148, 312
TasI	AATT	2 cut(s)	166, 209
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	2 cut(s)	287, 293
Tru1I	TTAA	3 cut(s)	203, 212, 576
Tru9I	TTAA	3 cut(s)	203, 212, 576
TscAI	CASTG	1 cut(s)	248
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	150, 287
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	584
TspGWI	ACGGA	1 cut(s)	493
TspRI	CASTG	1 cut(s)	248
Van91I	CCANNNNNTGG	1 cut(s)	457
XspI	CTAG	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.