Rorug02G0642700

Belongs to the cystatin family. Phytocystatin subfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
75430832 .. 75432706
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0642700.1

Sequence Viewer

Length: 579 bp
ATGGCGGCCAAGGATGATACAAAGGCAAAGATCCCCGGTAATGAAGTGACTTGTCAATTAAAGCTGGATAATAGCGCCAAGGGATGGCACAAGACCATTTCCAAAGTTTTGAAAACTATCGAGGGAGTATCTTACAGCATTGATATGCAAAATGGAAGCGTAACTGTTACGGGTTGGATTGACCCAGCAACCCTTATGGCTCGATTAGAGAAATCTGGGAAGAAAATAGAGCTGGTTAGGGTTGATTCAGGAGTTCTTCGTGAGGCGCGGTTAAAAAAACAGAAGCAGCAACAGCAGTTACAACAACAATATTATTATGGACAAGGATACCCTTATGGTTATGTTAATGGTCATTATCCTCAGCAATATGGATACTATAATCAGAGTGGAGCTGGATACCCTTATGGAACAACACCAGATTACTATCGCAATCATCATCAGCTCTACCCTAATTATTATCAGCAGCAGCCAGTTAGGTCCACTGCGCCACCTGCACCGCGATTAGGTTTTCCACAGCCACCACCGCCGTTGGAGATTCACCCGTTTTACGATCCAGAGACACAATGCACGATTATGTGA

Protein Analysis

192

Amino Acids

21.9

Weight (kDa)

9.12

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 31 - 75 7.2e-06 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000425)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47550
fragaria_vesca FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 499
Acc36I ACCTGC 1 cut(s) 499
AccB7I CCANNNNNTGG 1 cut(s) 84
AccII CGCG 2 cut(s) 268, 499
AciI CCGC 4 cut(s) 5, 268, 497, 524
AclWI GGATC 2 cut(s) 25, 545
AcoI YGGCCR 1 cut(s) 6
AfiI CCNNNNNNNGG 2 cut(s) 84, 503
AgsI TTSAA 1 cut(s) 112
AluBI AGCT 4 cut(s) 64, 232, 392, 442
AluI AGCT 4 cut(s) 64, 232, 392, 442
Alw26I GTCTC 1 cut(s) 551
AlwI GGATC 2 cut(s) 25, 545
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 3 cut(s) 286, 463, 466
AspLEI GCGC 3 cut(s) 77, 268, 487
AspS9I GGNCC 1 cut(s) 477
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 530
AvaII GGWCC 1 cut(s) 477
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 3 cut(s) 298, 475, 478
BccI CCATC 1 cut(s) 78
BceAI ACGGC 1 cut(s) 511
BciVI GTATCC 3 cut(s) 320, 365, 389
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 551
BfoI RGCGCY 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 499
BfuI GTATCC 3 cut(s) 320, 365, 389
BisI GCNGC 4 cut(s) 6, 287, 464, 467
BlsI GCNGC 4 cut(s) 7, 288, 465, 468
Bme1390I CCNGG 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 477
BmgT120I GGNCC 1 cut(s) 477
BmrFI CCNGG 1 cut(s) 36
Bpu10I CCTNAGC 1 cut(s) 360
BpuMI CCSGG 1 cut(s) 36
BsaBI GATNNNNATC 1 cut(s) 423
BsaJI CCNNGG 3 cut(s) 9, 34, 78
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 503
Bse1I ACTGG 1 cut(s) 470
Bse8I GATNNNNATC 1 cut(s) 423
BseDI CCNNGG 3 cut(s) 9, 34, 78
BseGI GGATG 2 cut(s) 19, 89
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 2 cut(s) 84, 503
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 1 cut(s) 470
BseXI GCAGC 3 cut(s) 298, 475, 478
BseYI CCCAGC 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 477
Bsh1236I CGCG 2 cut(s) 268, 499
BshFI GGCC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 2 cut(s) 84, 503
BsmAI GTCTC 1 cut(s) 551
BsnI GGCC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 30, 550
BspACI CCGC 4 cut(s) 5, 268, 497, 524
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 373
BspFNI CGCG 2 cut(s) 268, 499
BspMI ACCTGC 1 cut(s) 499
BspPI GGATC 2 cut(s) 25, 545
BsrI ACTGG 1 cut(s) 470
BssECI CCNNGG 3 cut(s) 9, 34, 78
BssMI GATC 2 cut(s) 30, 550
BssT1I CCWWGG 2 cut(s) 9, 78
Bst4CI ACNGT 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 360
BstF5I GGATG 2 cut(s) 19, 89
BstFNI CGCG 2 cut(s) 268, 499
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 3 cut(s) 77, 268, 487
BstKTI GATC 2 cut(s) 33, 553
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 2 cut(s) 30, 550
BstMWI GCNNNNNNNGC 3 cut(s) 292, 491, 523
BstSCI CCNGG 1 cut(s) 34
BstUI CGCG 2 cut(s) 268, 499
BstV1I GCAGC 3 cut(s) 298, 475, 478
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BsuI GTATCC 3 cut(s) 320, 365, 389
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 2 cut(s) 19, 89
BtsI GCAGTG 1 cut(s) 480
BtsIMutI CAGTG 1 cut(s) 480
BveI ACCTGC 1 cut(s) 499
CfoI GCGC 3 cut(s) 77, 268, 487
Cfr13I GGNCC 1 cut(s) 477
CspCI CAANNNNNGTGG 2 cut(s) 510, 545
CviJI RGCY 8 cut(s) 8, 64, 200, 232, 392, 442, 469, 517
CviKI_1 RGCY 8 cut(s) 8, 64, 200, 232, 392, 442, 469, 517
DdeI CTNAG 1 cut(s) 360
DpnI GATC 2 cut(s) 32, 552
DpnII GATC 2 cut(s) 30, 550
EaeI YGGCCR 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 9, 78
Eco47I GGWCC 1 cut(s) 477
EcoT14I CCWWGG 2 cut(s) 9, 78
ErhI CCWWGG 2 cut(s) 9, 78
FaiI YATR 9 cut(s) 146, 197, 318, 336, 342, 369, 378, 405, 575
Fnu4HI GCNGC 4 cut(s) 6, 287, 464, 467
FokI GGATG 2 cut(s) 26, 96
Fsp4HI GCNGC 4 cut(s) 6, 287, 464, 467
GlaI GCGC 3 cut(s) 76, 267, 486
GluI GCNGC 4 cut(s) 6, 287, 464, 467
GsaI CCCAGC 1 cut(s) 188
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 1 cut(s) 8
HapII CCGG 1 cut(s) 36
HhaI GCGC 3 cut(s) 77, 268, 487
Hin6I GCGC 3 cut(s) 75, 266, 485
HinP1I GCGC 3 cut(s) 75, 266, 485
HinfI GANTC 2 cut(s) 245, 535
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 530
Hpy166II GTNNAC 1 cut(s) 480
Hpy188I TCNGA 1 cut(s) 384
Hpy188III TCNNGA 3 cut(s) 249, 260, 554
Hpy8I GTNNAC 1 cut(s) 480
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 3 cut(s) 148, 494, 567
HpyF10VI GCNNNNNNNGC 3 cut(s) 292, 491, 523
HpyF3I CTNAG 1 cut(s) 360
HspAI GCGC 3 cut(s) 75, 266, 485
Kzo9I GATC 2 cut(s) 30, 550
LmnI GCTCC 1 cut(s) 389
Lsp1109I GCAGC 3 cut(s) 298, 475, 478
MaeIII GTNAC 4 cut(s) 46, 160, 166, 297
MalI GATC 2 cut(s) 32, 552
MboI GATC 2 cut(s) 30, 550
MboII GAAGA 2 cut(s) 232, 248
MflI RGATCY 1 cut(s) 30
MluCI AATT 2 cut(s) 56, 451
MmeI TCCRAC 2 cut(s) 155, 510
MnlI CCTC 3 cut(s) 115, 256, 369
MseI TTAA 3 cut(s) 59, 272, 345
MslI CAYNNNNRTG 2 cut(s) 143, 572
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 36
MvnI CGCG 2 cut(s) 268, 499
MwoI GCNNNNNNNGC 3 cut(s) 292, 491, 523
NciI CCSGG 1 cut(s) 36
NdeII GATC 2 cut(s) 30, 550
NmuCI GTSAC 1 cut(s) 46
PaqCI CACCTGC 1 cut(s) 499
PfeI GAWTC 2 cut(s) 245, 535
PflMI CCANNNNNTGG 1 cut(s) 84
PkrI GCNGC 4 cut(s) 7, 288, 465, 468
PspFI CCCAGC 1 cut(s) 184
PspPI GGNCC 1 cut(s) 477
PsuI RGATCY 1 cut(s) 30
RseI CAYNNNNRTG 2 cut(s) 143, 572
SaqAI TTAA 3 cut(s) 59, 272, 345
SatI GCNGC 4 cut(s) 6, 287, 464, 467
Sau3AI GATC 2 cut(s) 30, 550
Sau96I GGNCC 1 cut(s) 477
ScrFI CCNGG 1 cut(s) 36
SetI ASST 7 cut(s) 66, 234, 394, 444, 479, 493, 508
SinI GGWCC 1 cut(s) 477
SmiMI CAYNNNNRTG 2 cut(s) 143, 572
Sse9I AATT 2 cut(s) 56, 451
SsiI CCGC 4 cut(s) 5, 268, 497, 524
SspI AATATT 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 2 cut(s) 9, 78
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 2 cut(s) 120, 202
TasI AATT 2 cut(s) 56, 451
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 245, 535
Tru1I TTAA 3 cut(s) 59, 272, 345
Tru9I TTAA 3 cut(s) 59, 272, 345
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 3 cut(s) 286, 463, 466
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 57
TspRI CASTG 1 cut(s) 487
Van91I CCANNNNNTGG 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.