Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Reverse (-)

756146 .. 756394

Gene Structure 249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG011000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCGTCCATTCTTCTGCCTCCTCGCAATCCTCGCCGTCCTCCTCCCTCTGGCTGCCGCCTCACGCGTCGGACTGGCCAGCGGATGGAAGCCGAGTAAGGACATCAACGACCCCCACGTGAAGGAGATCGCGGTGTCGGAGTACAATAAGAAATCCGGGAAGAAGCTGGAGTTTCAAAGCGTGGTGAAGGGCGAGACTCAGGTCGTCGCCGCGCGAGAACTACCAGCTCATCATCGCCGTCAAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

82

Amino Acids

9.01

Weight (kDa)

9.92

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	33 - 72	2e-11	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	84
AccII	CGCG	4 cut(s)	66, 131, 212, 214
AciI	CCGC	4 cut(s)	57, 81, 131, 210
AcoI	YGGCCR	1 cut(s)	75
AcvI	CACGTG	1 cut(s)	118
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	3 cut(s)	49, 84, 121
AflIII	ACRYGT	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	176
AluBI	AGCT	2 cut(s)	166, 227
AluI	AGCT	2 cut(s)	166, 227
Alw26I	GTCTC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	214
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	196
BalI	TGGCCA	1 cut(s)	77
BbrPI	CACGTG	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	78
BceAI	ACGGC	2 cut(s)	20, 222
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	188
BisI	GCNGC	3 cut(s)	54, 57, 210
BlsI	GCNGC	3 cut(s)	55, 58, 211
Bme1390I	CCNGG	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	157
BoxI	GACNNNNGTC	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	157
BsaAI	YACGTR	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 84, 121
Bse1I	ACTGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	3 cut(s)	49, 84, 121
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	78
BseRI	GAGGAG	2 cut(s)	11, 32
BseXI	GCAGC	1 cut(s)	40
Bsh1236I	CGCG	4 cut(s)	66, 131, 212, 214
BshFI	GGCC	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	156
BslI	CCNNNNNNNGG	3 cut(s)	49, 84, 121
BsmAI	GTCTC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	126
BspACI	CCGC	4 cut(s)	57, 81, 131, 210
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	4 cut(s)	66, 131, 212, 214
BsrI	ACTGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	126
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	89
BstFNI	CGCG	4 cut(s)	66, 131, 212, 214
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	1 cut(s)	129
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstPAI	GACNNNNGTC	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	155
BstUI	CGCG	4 cut(s)	66, 131, 212, 214
BstV1I	GCAGC	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	77
BtgZI	GCGATG	1 cut(s)	218
BtsCI	GGATG	1 cut(s)	89
Cac8I	GCNNGC	1 cut(s)	79
CfoI	GCGC	1 cut(s)	214
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	142
CviJI	RGCY	5 cut(s)	53, 77, 91, 166, 227
CviKI_1	RGCY	5 cut(s)	53, 77, 91, 166, 227
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
EaeI	YGGCCR	1 cut(s)	75
Eco72I	CACGTG	1 cut(s)	118
Fnu4HI	GCNGC	3 cut(s)	54, 57, 210
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	54, 57, 210
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	3 cut(s)	54, 57, 210
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HinfI	GANTC	1 cut(s)	196
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	1 cut(s)	196
Hpy188I	TCNGA	2 cut(s)	71, 139
Hpy99I	CGWCG	2 cut(s)	71, 209
HpyAV	CCTTC	2 cut(s)	115, 181
HpyCH4IV	ACGT	1 cut(s)	117
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	117
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	126
LpnPI	CCDG	7 cut(s)	35, 59, 91, 152, 169, 185, 237
Lsp1109I	GCAGC	1 cut(s)	40
MaeII	ACGT	1 cut(s)	117
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	2 cut(s)	4, 172
MlsI	TGGCCA	1 cut(s)	77
MluI	ACGCGT	1 cut(s)	64
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	2 cut(s)	49, 117
MnlI	CCTC	7 cut(s)	29, 32, 41, 50, 53, 57, 70
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	157
MvnI	CGCG	4 cut(s)	66, 131, 212, 214
MwoI	GCNNNNNNNGC	1 cut(s)	32
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	1 cut(s)	126
NmeAIII	GCCGAG	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PflMI	CCANNNNNTGG	1 cut(s)	84
PfoI	TCCNGGA	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	55, 58, 211
PleI	GAGTC	1 cut(s)	190
PmaCI	CACGTG	1 cut(s)	118
PmlI	CACGTG	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	190
Ppu21I	YACGTR	1 cut(s)	118
PshAI	GACNNNNGTC	1 cut(s)	200
PspCI	CACGTG	1 cut(s)	118
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SatI	GCNGC	3 cut(s)	54, 57, 210
Sau3AI	GATC	1 cut(s)	126
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	157
SetI	ASST	4 cut(s)	120, 168, 204, 229
SsiI	CCGC	4 cut(s)	57, 81, 131, 210
StyD4I	CCNGG	1 cut(s)	155
TaiI	ACGT	1 cut(s)	120
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	2 cut(s)	59, 212
TseI	GCWGC	1 cut(s)	53
Van91I	CCANNNNNTGG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.