Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Reverse (-)

22618227 .. 22618574

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g21470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCTTCTCTTTGCTCTACTGGTTTCTCTGGTAACCGCCACTACAACAAACAACGTTCCCGGTACCTGGAAGCCTATAGACGGCATCGATTTAAACGCGACAGAGATCGGAGAGTGGGCCGTTTCCGAGTGCAACAAGAATGCCACAAACAAGTTAGTTTTTGAAAAACTGATTTCATCTGAGATAACATTTGTATCAGGCACCTTATATTTGCTTGTTGTTGCGGCTAAGAACGAGTCTTTGCCTAATCCCACCGGAAATTACAGAGCTTCAGTACACGACAGGGATGGAGCGCCGCGGGAATTGATAGCCTTTTTAAAGATAGAGGCCGTAGAAAATAATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

116

Amino Acids

12.5

Weight (kDa)

4.86

Isoelectric Point (pI)

24.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	30 - 96	3.5e-13	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	62
AccB1I	GGYRCC	2 cut(s)	62, 200
AccII	CGCG	2 cut(s)	98, 298
AciI	CCGC	4 cut(s)	36, 224, 296, 298
AclI	AACGTT	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	2 cut(s)	64, 276
AfiI	CCNNNNNNNGG	2 cut(s)	66, 80
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	65
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
AoxI	GGCC	2 cut(s)	117, 327
Asp718I	GGTACC	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	1 cut(s)	60
BaeI	ACNNNNGTAYC	2 cut(s)	177, 210
BanI	GGYRCC	2 cut(s)	62, 200
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	3 cut(s)	97, 104, 314
BciT130I	CCWGG	1 cut(s)	67
BcnI	CCSGG	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	296
BisI	GCNGC	2 cut(s)	225, 296
BlsI	GCNGC	2 cut(s)	226, 297
Bme1390I	CCNGG	2 cut(s)	60, 67
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	2 cut(s)	64, 202
BmrFI	CCNGG	2 cut(s)	60, 67
BmsI	GCATC	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	60
Bsa29I	ATCGAT	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	296
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 80
Bse1I	ACTGG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	67
BseCI	ATCGAT	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	2 cut(s)	66, 80
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	24
Bsh1236I	CGCG	2 cut(s)	98, 298
BshFI	GGCC	2 cut(s)	119, 329
BshNI	GGYRCC	2 cut(s)	62, 200
BshVI	ATCGAT	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	60, 255
BslI	CCNNNNNNNGG	2 cut(s)	66, 80
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	119, 329
Bsp143I	GATC	1 cut(s)	105
BspACI	CCGC	4 cut(s)	36, 224, 296, 298
BspANI	GGCC	2 cut(s)	119, 329
BspCNI	CTCAG	1 cut(s)	172
BspDI	ATCGAT	1 cut(s)	87
BspFNI	CGCG	2 cut(s)	98, 298
BspLI	GGNNCC	2 cut(s)	64, 202
BspT107I	GGYRCC	2 cut(s)	62, 200
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	180, 228
BstDSI	CCRYGG	1 cut(s)	296
BstEII	GGTNACC	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	2 cut(s)	98, 298
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	1 cut(s)	108
BstMBI	GATC	1 cut(s)	105
BstNI	CCWGG	1 cut(s)	67
BstPI	GGTNACC	1 cut(s)	31
BstSCI	CCNGG	2 cut(s)	58, 65
BstSFI	CTRYAG	1 cut(s)	75
BstUI	CGCG	2 cut(s)	98, 298
Bsu15I	ATCGAT	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	119, 329
BsuTUI	ATCGAT	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	296
BtsCI	GGATG	1 cut(s)	292
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	117
Cfr42I	CCGCGG	1 cut(s)	299
ClaI	ATCGAT	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	63, 275
CviJI	RGCY	6 cut(s)	73, 119, 227, 269, 311, 329
CviKI_1	RGCY	6 cut(s)	73, 119, 227, 269, 311, 329
CviQI	GTAC	2 cut(s)	63, 275
DdeI	CTNAG	2 cut(s)	180, 228
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
DraI	TTTAAA	2 cut(s)	93, 318
Eco57I	CTGAAG	1 cut(s)	255
Eco91I	GGTNACC	1 cut(s)	31
EcoO65I	GGTNACC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	65
FaiI	YATR	2 cut(s)	77, 208
FauI	CCCGC	1 cut(s)	291
Fnu4HI	GCNGC	2 cut(s)	225, 296
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	2 cut(s)	225, 296
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	2 cut(s)	225, 296
HaeII	RGCGCY	1 cut(s)	296
HaeIII	GGCC	2 cut(s)	119, 329
HapII	CCGG	2 cut(s)	60, 255
HhaI	GCGC	1 cut(s)	295
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	2 cut(s)	60, 255
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	3 cut(s)	110, 127, 181
Hpy8I	GTNNAC	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	1 cut(s)	132
HpyF3I	CTNAG	2 cut(s)	180, 228
HpySE526I	ACGT	1 cut(s)	54
HspAI	GCGC	1 cut(s)	293
KpnI	GGTACC	1 cut(s)	66
KspI	CCGCGG	1 cut(s)	299
Kzo9I	GATC	1 cut(s)	105
LmnI	GCTCC	1 cut(s)	290
LpnPI	CCDG	8 cut(s)	5, 14, 52, 73, 79, 183, 268, 268
LweI	GCATC	1 cut(s)	93
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MluCI	AATT	2 cut(s)	259, 302
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	1 cut(s)	319
MseI	TTAA	2 cut(s)	92, 317
MspA1I	CMGCKG	1 cut(s)	298
MspI	CCGG	2 cut(s)	60, 255
MspR9I	CCNGG	2 cut(s)	60, 67
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	67
MvnI	CGCG	2 cut(s)	98, 298
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	1 cut(s)	105
NlaIV	GGNNCC	2 cut(s)	64, 202
PctI	GAATGC	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	226, 297
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp1406I	AACGTT	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	65
PspEI	GGTNACC	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	2 cut(s)	64, 202
PspPI	GGNCC	1 cut(s)	117
RsaI	GTAC	2 cut(s)	64, 276
RsaNI	GTAC	2 cut(s)	63, 275
SacII	CCGCGG	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	92, 317
SatI	GCNGC	2 cut(s)	225, 296
Sau3AI	GATC	1 cut(s)	105
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	60, 67
SetI	ASST	4 cut(s)	57, 68, 206, 271
SfaNI	GCATC	1 cut(s)	93
SfcI	CTRYAG	1 cut(s)	75
Sfr303I	CCGCGG	1 cut(s)	299
SgrBI	CCGCGG	1 cut(s)	299
Sse9I	AATT	2 cut(s)	259, 302
SsiI	CCGC	4 cut(s)	36, 224, 296, 298
SspI	AATATT	1 cut(s)	343
StyD4I	CCNGG	2 cut(s)	58, 65
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	87
TasI	AATT	2 cut(s)	259, 302
TatI	WGTACW	1 cut(s)	274
TauI	GCSGC	2 cut(s)	227, 298
Tru1I	TTAA	2 cut(s)	92, 317
Tru9I	TTAA	2 cut(s)	92, 317
TspDTI	ATGAA	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.