Rh1BG263000

Belongs to the cystatin family. Phytocystatin subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
39608165 .. 39609717
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG263000.1

Sequence Viewer

Length: 357 bp
ATGAGTTGGCACCACCTTGTCCTCGCACTCTTTGCTCTCTTCCTTCCTCTGGTCAAGGCCTTCGCAGACAGCGAGGTCATTGCAGTCGGTGGTTGGAGACCCATTGAGAACATCGGTGATCCCCATGTGAAGGAGATTGCAGAGTTCGCCGTGTCGGAGTACAACCAATCCCAGAAGAAGAACTTGGTGTTTCAGAGCGTGGTCCGGGGAGAGACTCAGGTCGTAGCAGGCATCAAGTATCGGCTCGTCATATCTGTCAAGGAAGATGATTCCTTCGAGAATTATGAGGCTGTTGTATGGGAGAAGAGATGGATGAAGTTCAGGAAATTGATCTCTTTTGATGAAGTGAATAATTAA

Protein Analysis

118

Amino Acids

13.64

Weight (kDa)

5.9

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cystatin PF00031 30 - 113 1e-14 Cystatin domain
SQAPI PF16845 35 - 116 8.7e-34 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000425)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47550
fragaria_vesca FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 9
AclWI GGATC 1 cut(s) 113
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 2 cut(s) 49, 130
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
Alw26I GTCTC 2 cut(s) 91, 206
AlwI GGATC 1 cut(s) 113
AoxI GGCC 1 cut(s) 57
AspS9I GGNCC 1 cut(s) 202
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 128
AvaII GGWCC 1 cut(s) 202
BanI GGYRCC 1 cut(s) 9
BccI CCATC 1 cut(s) 303
BceAI ACGGC 1 cut(s) 134
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BcnI CCSGG 1 cut(s) 206
BcoDI GTCTC 2 cut(s) 91, 206
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 1 cut(s) 240
BoxI GACNNNNGTC 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 205
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 130
Bse3DI GCAATG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 318
BseLI CCNNNNNNNGG 2 cut(s) 49, 130
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 230
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 205
BslI CCNNNNNNNGG 2 cut(s) 49, 130
BsmAI GTCTC 2 cut(s) 91, 206
BsnI GGCC 1 cut(s) 59
Bso31I GGTCTC 1 cut(s) 91
Bsp143I GATC 2 cut(s) 118, 330
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 11
BspPI GGATC 1 cut(s) 113
BspT107I GGYRCC 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 2 cut(s) 118, 330
Bst6I CTCTTC 2 cut(s) 44, 299
BstAPI GCANNNNNTGC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 318
BstKTI GATC 2 cut(s) 121, 333
BstMAI GTCTC 2 cut(s) 91, 206
BstMBI GATC 2 cut(s) 118, 330
BstMWI GCNNNNNNNGC 2 cut(s) 32, 146
BstPAI GACNNNNGTC 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 204
BsuRI GGCC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 160
CviAII CATG 1 cut(s) 125
CviJI RGCY 3 cut(s) 59, 244, 290
CviKI_1 RGCY 3 cut(s) 59, 244, 290
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 216
DpnI GATC 2 cut(s) 120, 332
DpnII GATC 2 cut(s) 118, 330
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
Eam1104I CTCTTC 2 cut(s) 44, 299
EarI CTCTTC 2 cut(s) 44, 299
Eco147I AGGCCT 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 202
FaeI CATG 1 cut(s) 128
FaiI YATR 4 cut(s) 126, 251, 285, 298
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FatI CATG 1 cut(s) 124
FokI GGATG 1 cut(s) 325
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 205
Hin1II CATG 1 cut(s) 128
HinfI GANTC 2 cut(s) 214, 269
HpaII CCGG 1 cut(s) 205
HphI GGTGA 1 cut(s) 128
Hpy188I TCNGA 2 cut(s) 157, 195
Hpy188III TCNNGA 2 cut(s) 277, 322
HpyAV CCTTC 4 cut(s) 53, 70, 124, 283
HpyCH4V TGCA 2 cut(s) 83, 140
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 146
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 1 cut(s) 128
Kzo9I GATC 2 cut(s) 118, 330
LpnPI CCDG 6 cut(s) 35, 185, 203, 213, 218, 307
LweI GCATC 1 cut(s) 240
MalI GATC 2 cut(s) 120, 332
MboI GATC 2 cut(s) 118, 330
MboII GAAGA 5 cut(s) 31, 187, 190, 275, 316
MluCI AATT 3 cut(s) 280, 326, 352
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 2 cut(s) 74, 135
MnlI CCTC 4 cut(s) 32, 57, 67, 280
MseI TTAA 1 cut(s) 355
MspI CCGG 1 cut(s) 205
MspR9I CCNGG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 32, 146
NciI CCSGG 1 cut(s) 206
NdeII GATC 2 cut(s) 118, 330
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 11
PceI AGGCCT 1 cut(s) 59
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PfeI GAWTC 1 cut(s) 269
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PshAI GACNNNNGTC 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 11
PspPI GGNCC 1 cut(s) 202
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SaqAI TTAA 1 cut(s) 355
Sau3AI GATC 2 cut(s) 118, 330
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 206
SetI ASST 3 cut(s) 18, 78, 222
SfaNI GCATC 1 cut(s) 240
SinI GGWCC 1 cut(s) 202
Sse9I AATT 3 cut(s) 280, 326, 352
SseBI AGGCCT 1 cut(s) 59
StuI AGGCCT 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 204
TaqI TCGA 1 cut(s) 276
TasI AATT 3 cut(s) 280, 326, 352
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 1 cut(s) 355
Tru9I TTAA 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 329, 357
VpaK11BI GGWCC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.