Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Reverse (-)

453511 .. 455101

Gene Structure 1591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G008900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAGGATAGTATTGTTAGTCAAGAAAATTCAAGAAATTCAACAAAGCAATAAATCAACGGTCATGATGCGTCCTCACTGCCTCCTCGCACTCGTTGCCCTCGTCCTTCCTCTGGTTGCCGCTGCAGCCACAGGCCACAGGGACGCCTTGGTCGGCGGTTATCAGCCCATAAAGAACATCAGCGACCCTCATGTGAAAGAGATCGCAGAGTTCGCGGTGTCGGAATACAACAAGCAGGCCCAAGGCAAGAACAAGTTGGTGTTTCAGAGCGTGATCCGCGGCGAGACCCAGGTGGTGGCCGGCATCAAGTATCGCCTTGTCATTTCGGCCAAGAATGAGTCGTCGGCGGTGTCCAACCCCACAGCCGCAGCGGCTGCAGGAGACAATTATCAGGCTGTTGTCCTGGAAAAGAGTTGGGAGCATTTTAGGCAATTGATCTCCTTCCGTAAATTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

153

Amino Acids

16.65

Weight (kDa)

9.79

Isoelectric Point (pI)

28.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	149
AccB7I	CCANNNNNTGG	1 cut(s)	295
AccII	CGCG	2 cut(s)	215, 279
AciI	CCGC	8 cut(s)	120, 156, 215, 277, 279, 347, 366, 371
AclWI	GGATC	1 cut(s)	268
AcoI	YGGCCR	2 cut(s)	297, 327
AcsI	RAATTY	2 cut(s)	27, 36
AcyI	GRCGYC	1 cut(s)	144
AfiI	CCNNNNNNNGG	3 cut(s)	112, 295, 451
AgsI	TTSAA	2 cut(s)	32, 41
AjnI	CCWGG	2 cut(s)	288, 402
Alw26I	GTCTC	2 cut(s)	278, 375
AlwI	GGATC	1 cut(s)	268
AlwNI	CAGNNNCTG	1 cut(s)	374
AoxI	GGCC	4 cut(s)	133, 237, 297, 327
ApeKI	GCWGC	4 cut(s)	122, 125, 368, 374
ApoI	RAATTY	2 cut(s)	27, 36
AspS9I	GGNCC	1 cut(s)	238
BbvI	GCAGC	4 cut(s)	109, 137, 361, 380
BciT130I	CCWGG	2 cut(s)	290, 404
BcoDI	GTCTC	2 cut(s)	278, 375
BfmI	CTRYAG	2 cut(s)	123, 375
BglI	GCCNNNNNGGC	1 cut(s)	371
BisI	GCNGC	8 cut(s)	120, 123, 126, 280, 366, 369, 372, 375
BlsI	GCNGC	8 cut(s)	121, 124, 127, 281, 367, 370, 373, 376
Bme1390I	CCNGG	2 cut(s)	290, 404
BmgT120I	GGNCC	1 cut(s)	238
BmrFI	CCNGG	2 cut(s)	290, 404
BmsI	GCATC	2 cut(s)	57, 312
BsaHI	GRCGYC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	4 cut(s)	147, 241, 277, 288
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 295, 451
Bse118I	RCCGGY	1 cut(s)	299
BseBI	CCWGG	2 cut(s)	290, 404
BseDI	CCNNGG	4 cut(s)	147, 241, 277, 288
BseLI	CCNNNNNNNGG	3 cut(s)	112, 295, 451
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	4 cut(s)	109, 137, 361, 380
Bsh1236I	CGCG	2 cut(s)	215, 279
BshFI	GGCC	4 cut(s)	135, 239, 299, 329
BsiSI	CCGG	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	3 cut(s)	112, 295, 451
BsmAI	GTCTC	2 cut(s)	278, 375
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	4 cut(s)	135, 239, 299, 329
Bso31I	GGTCTC	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	201, 273, 435
BspACI	CCGC	8 cut(s)	120, 156, 215, 277, 279, 347, 366, 371
BspANI	GGCC	4 cut(s)	135, 239, 299, 329
BspFNI	CGCG	2 cut(s)	215, 279
BspHI	TCATGA	1 cut(s)	63
BspMAI	CTGCAG	2 cut(s)	127, 379
BspPI	GGATC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	299
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	4 cut(s)	147, 241, 277, 288
BssMI	GATC	3 cut(s)	201, 273, 435
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	2 cut(s)	147, 241
Bst2UI	CCWGG	2 cut(s)	290, 404
Bst4CI	ACNGT	1 cut(s)	61
BstACI	GRCGYC	1 cut(s)	144
BstAPI	GCANNNNNTGC	2 cut(s)	95, 374
BstC8I	GCNNGC	2 cut(s)	237, 301
BstDSI	CCRYGG	1 cut(s)	277
BstFNI	CGCG	2 cut(s)	215, 279
BstKTI	GATC	3 cut(s)	204, 276, 438
BstMAI	GTCTC	2 cut(s)	278, 375
BstMBI	GATC	3 cut(s)	201, 273, 435
BstMWI	GCNNNNNNNGC	7 cut(s)	95, 125, 212, 276, 371, 374, 427
BstNI	CCWGG	2 cut(s)	290, 404
BstSCI	CCNGG	2 cut(s)	288, 402
BstSFI	CTRYAG	2 cut(s)	123, 375
BstUI	CGCG	2 cut(s)	215, 279
BstV1I	GCAGC	4 cut(s)	109, 137, 361, 380
BsuRI	GGCC	4 cut(s)	135, 239, 299, 329
BtgI	CCRYGG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	237, 301
CaiI	CAGNNNCTG	1 cut(s)	374
CciI	TCATGA	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	238
Cfr42I	CCGCGG	1 cut(s)	280
CseI	GACGC	2 cut(s)	59, 152
CviAII	CATG	2 cut(s)	64, 191
CviJI	RGCY	9 cut(s)	128, 135, 166, 239, 299, 329, 365, 374, 395
CviKI_1	RGCY	9 cut(s)	128, 135, 166, 239, 299, 329, 365, 374, 395
DpnI	GATC	3 cut(s)	203, 275, 437
DpnII	GATC	3 cut(s)	201, 273, 435
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
EaeI	YGGCCR	2 cut(s)	297, 327
Eco130I	CCWWGG	2 cut(s)	147, 241
Eco31I	GGTCTC	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	288, 402
EcoT14I	CCWWGG	2 cut(s)	147, 241
ErhI	CCWWGG	2 cut(s)	147, 241
FaeI	CATG	2 cut(s)	67, 194
FaiI	YATR	4 cut(s)	65, 170, 192, 457
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	2 cut(s)	63, 190
Fnu4HI	GCNGC	8 cut(s)	120, 123, 126, 280, 366, 369, 372, 375
Fsp4HI	GCNGC	8 cut(s)	120, 123, 126, 280, 366, 369, 372, 375
GluI	GCNGC	8 cut(s)	120, 123, 126, 280, 366, 369, 372, 375
HaeIII	GGCC	4 cut(s)	135, 239, 299, 329
HapII	CCGG	1 cut(s)	300
HgaI	GACGC	2 cut(s)	59, 152
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	2 cut(s)	67, 194
HinfI	GANTC	1 cut(s)	338
HpaII	CCGG	1 cut(s)	300
Hpy188I	TCNGA	2 cut(s)	223, 267
Hpy188III	TCNNGA	3 cut(s)	22, 32, 64
Hpy99I	CGWCG	1 cut(s)	346
HpyAV	CCTTC	2 cut(s)	116, 451
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	125, 377
HpyF10VI	GCNNNNNNNGC	7 cut(s)	95, 125, 212, 276, 371, 374, 427
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	2 cut(s)	67, 194
KroI	GCCGGC	1 cut(s)	299
KroNI	GCCGGC	1 cut(s)	301
KspI	CCGCGG	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	201, 273, 435
LmnI	GCTCC	1 cut(s)	418
Lsp1109I	GCAGC	4 cut(s)	109, 137, 361, 380
LweI	GCATC	2 cut(s)	57, 312
MalI	GATC	3 cut(s)	203, 275, 437
MboI	GATC	3 cut(s)	201, 273, 435
MfeI	CAATTG	1 cut(s)	431
MluCI	AATT	5 cut(s)	27, 36, 385, 431, 449
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	2 cut(s)	201, 378
MnlI	CCTC	6 cut(s)	84, 92, 95, 110, 120, 198
MroNI	GCCGGC	1 cut(s)	299
MspA1I	CMGCKG	3 cut(s)	122, 279, 371
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	2 cut(s)	290, 404
MunI	CAATTG	1 cut(s)	431
MvaI	CCWGG	2 cut(s)	290, 404
MvnI	CGCG	2 cut(s)	215, 279
MwoI	GCNNNNNNNGC	7 cut(s)	95, 125, 212, 276, 371, 374, 427
NaeI	GCCGGC	1 cut(s)	301
NdeII	GATC	3 cut(s)	201, 273, 435
NgoMIV	GCCGGC	1 cut(s)	299
NlaIII	CATG	2 cut(s)	67, 194
PagI	TCATGA	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdiI	GCCGGC	1 cut(s)	301
PflMI	CCANNNNNTGG	1 cut(s)	295
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	8 cut(s)	121, 124, 127, 281, 367, 370, 373, 376
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Psp6I	CCWGG	2 cut(s)	288, 402
PspGI	CCWGG	2 cut(s)	288, 402
PspPI	GGNCC	1 cut(s)	238
PstI	CTGCAG	2 cut(s)	127, 379
PstNI	CAGNNNCTG	1 cut(s)	374
SacII	CCGCGG	1 cut(s)	280
SatI	GCNGC	8 cut(s)	120, 123, 126, 280, 366, 369, 372, 375
Sau3AI	GATC	3 cut(s)	201, 273, 435
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	2 cut(s)	290, 404
SetI	ASST	1 cut(s)	294
SfaNI	GCATC	2 cut(s)	57, 312
SfcI	CTRYAG	2 cut(s)	123, 375
Sfr303I	CCGCGG	1 cut(s)	280
SgrBI	CCGCGG	1 cut(s)	280
Sse9I	AATT	5 cut(s)	27, 36, 385, 431, 449
SsiI	CCGC	8 cut(s)	120, 156, 215, 277, 279, 347, 366, 371
StyD4I	CCNGG	2 cut(s)	288, 402
StyI	CCWWGG	2 cut(s)	147, 241
TaaI	ACNGT	1 cut(s)	61
TasI	AATT	5 cut(s)	27, 36, 385, 431, 449
TauI	GCSGC	4 cut(s)	122, 282, 368, 374
TscAI	CASTG	1 cut(s)	83
TseI	GCWGC	4 cut(s)	122, 125, 368, 374
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	1 cut(s)	83
Van91I	CCANNNNNTGG	1 cut(s)	295
XapI	RAATTY	2 cut(s)	27, 36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.