Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Forward (+)

53087457 .. 53090407

Gene Structure 2951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG299200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAGTCGACACCACCTTGTCCTCGCTCTCTTTGCTCTCCTCCTTCCTCTGGTCAAGGCCTTCGCAGACAGCGAGGTCATTGTAGTCGGTGGTTGGAGACCCATTGAGAACATCGGTGATCCCCATGTGAAGGAGATTGCAGAGTTCGCCGTGTCGGAGTACAACCAATCCCAGAAGACGAACTTGATGTTTCAGAGCGTGGTCCGGGGAGAGACTCAGGTCGTAGCAGGCATCAAGTATCGGCTTGTCATATCTGTCAAGGAAGATGATTCCTTCGAGAATTATGAGGCTGTTGTATGGGAGAAGAGATGGATGAATTCGCTTTCTTCTACCAGATCTCTCCATTGCCGGAAACTATGCCGTCACCGGCGAGTGTGCGATGACAATTCCGGCTGGTGTCTCAGTCGCGGAGAGAGCTCTCATCCGCCATGGAAGTTAAAGGTTTTGGCGTCTTCTTCTTCTTCGGGTTCATTTTGTAGTAGTAGCCCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

164

Amino Acids

18.48

Weight (kDa)

8.64

Isoelectric Point (pI)

59.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	30 - 107	3.4e-13	Cystatin domain
SQAPI	PF16845	35 - 108	2.3e-29	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	7
AccII	CGCG	1 cut(s)	408
AciI	CCGC	2 cut(s)	408, 425
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	316
AcyI	GRCGYC	1 cut(s)	449
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	49, 130
AluBI	AGCT	1 cut(s)	417
AluI	AGCT	1 cut(s)	417
Alw21I	GWGCWC	1 cut(s)	419
Alw26I	GTCTC	3 cut(s)	91, 206, 404
AlwI	GGATC	1 cut(s)	113
AoxI	GGCC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	202
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	128, 356
AvaII	GGWCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	419
BbsI	GAAGAC	2 cut(s)	182, 444
Bbv12I	GWGCWC	1 cut(s)	419
BccI	CCATC	1 cut(s)	303
BceAI	ACGGC	2 cut(s)	134, 345
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	3 cut(s)	91, 206, 404
BglII	AGATCT	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	240
BoxI	GACNNNNGTC	1 cut(s)	218
BpiI	GAAGAC	2 cut(s)	182, 444
BpuMI	CCSGG	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	449
BsaI	GGTCTC	1 cut(s)	91
BsaJI	CCNNGG	2 cut(s)	205, 428
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 130
Bse118I	RCCGGY	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	343
BseDI	CCNNGG	2 cut(s)	205, 428
BseGI	GGATG	2 cut(s)	318, 421
BseLI	CCNNNNNNNGG	2 cut(s)	49, 130
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	2 cut(s)	230, 415
BseRI	GAGGAG	1 cut(s)	29
Bsh1236I	CGCG	1 cut(s)	408
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	419
BsiSI	CCGG	4 cut(s)	205, 349, 367, 390
BslI	CCNNNNNNNGG	2 cut(s)	49, 130
BsmAI	GTCTC	3 cut(s)	91, 206, 404
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	419
Bsp143I	GATC	2 cut(s)	118, 335
Bsp19I	CCATGG	1 cut(s)	428
BspACI	CCGC	2 cut(s)	408, 425
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	2 cut(s)	229, 414
BspFNI	CGCG	1 cut(s)	408
BspPI	GGATC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	343
BsrFI	RCCGGY	1 cut(s)	366
BssAI	RCCGGY	1 cut(s)	366
BssECI	CCNNGG	2 cut(s)	205, 428
BssMI	GATC	2 cut(s)	118, 335
BssNI	GRCGYC	1 cut(s)	449
BssT1I	CCWWGG	1 cut(s)	428
Bst6I	CTCTTC	1 cut(s)	299
BstACI	GRCGYC	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	216, 401
BstDSI	CCRYGG	1 cut(s)	428
BstF5I	GGATG	2 cut(s)	318, 421
BstFNI	CGCG	1 cut(s)	408
BstKTI	GATC	2 cut(s)	121, 338
BstMAI	GTCTC	3 cut(s)	91, 206, 404
BstMBI	GATC	2 cut(s)	118, 335
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 146, 414
BstPAI	GACNNNNGTC	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	204
BstUI	CGCG	1 cut(s)	408
BstV2I	GAAGAC	2 cut(s)	182, 444
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	428
BtgZI	GCGATG	1 cut(s)	393
BtsCI	GGATG	2 cut(s)	318, 421
Cac8I	GCNNGC	1 cut(s)	229
Cfr10I	RCCGGY	1 cut(s)	366
Cfr13I	GGNCC	1 cut(s)	202
CseI	GACGC	1 cut(s)	438
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	2 cut(s)	125, 429
CviJI	RGCY	6 cut(s)	59, 244, 290, 393, 417, 486
CviKI_1	RGCY	6 cut(s)	59, 244, 290, 393, 417, 486
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	2 cut(s)	216, 401
DpnI	GATC	2 cut(s)	120, 337
DpnII	GATC	2 cut(s)	118, 335
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
EciI	GGCGGA	1 cut(s)	414
Ecl136II	GAGCTC	1 cut(s)	417
Eco130I	CCWWGG	1 cut(s)	428
Eco147I	AGGCCT	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	419
Eco31I	GGTCTC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	417
EcoICRI	GAGCTC	1 cut(s)	417
EcoRI	GAATTC	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	428
EcoT38I	GRGCYC	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	428
FaeI	CATG	2 cut(s)	128, 432
FaiI	YATR	6 cut(s)	126, 251, 285, 298, 358, 430
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FatI	CATG	2 cut(s)	124, 428
FblI	GTMKAC	1 cut(s)	7
FokI	GGATG	2 cut(s)	325, 408
FriOI	GRGCYC	1 cut(s)	419
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	4 cut(s)	205, 349, 367, 390
HgaI	GACGC	1 cut(s)	438
Hin1I	GRCGYC	1 cut(s)	449
Hin1II	CATG	2 cut(s)	128, 432
HincII	GTYRAC	1 cut(s)	8
HindII	GTYRAC	1 cut(s)	8
HinfI	GANTC	3 cut(s)	4, 214, 269
HpaII	CCGG	4 cut(s)	205, 349, 367, 390
HphI	GGTGA	2 cut(s)	128, 356
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	2 cut(s)	157, 195
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	4 cut(s)	53, 70, 124, 283
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 146, 414
HpyF3I	CTNAG	2 cut(s)	216, 401
Hsp92I	GRCGYC	1 cut(s)	449
Hsp92II	CATG	2 cut(s)	128, 432
Kzo9I	GATC	2 cut(s)	118, 335
LweI	GCATC	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	2 cut(s)	120, 337
MboI	GATC	2 cut(s)	118, 335
MboII	GAAGA	8 cut(s)	187, 275, 316, 318, 444, 447, 450, 453
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	419
MluCI	AATT	3 cut(s)	280, 316, 385
MlyI	GAGTC	2 cut(s)	13, 208
MmeI	TCCRAC	2 cut(s)	74, 135
MnlI	CCTC	5 cut(s)	32, 50, 57, 67, 280
MseI	TTAA	1 cut(s)	437
MspI	CCGG	4 cut(s)	205, 349, 367, 390
MspR9I	CCNGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	3 cut(s)	32, 146, 414
NciI	CCSGG	1 cut(s)	206
NcoI	CCATGG	1 cut(s)	428
NdeII	GATC	2 cut(s)	118, 335
NlaIII	CATG	2 cut(s)	128, 432
NmuCI	GTSAC	1 cut(s)	362
PceI	AGGCCT	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	269
PleI	GAGTC	2 cut(s)	12, 208
PpsI	GAGTC	2 cut(s)	12, 208
PshAI	GACNNNNGTC	1 cut(s)	218
Psp124BI	GAGCTC	1 cut(s)	419
PspPI	GGNCC	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	335
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SacI	GAGCTC	1 cut(s)	419
SalI	GTCGAC	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	437
Sau3AI	GATC	2 cut(s)	118, 335
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	2 cut(s)	13, 208
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	419
SetI	ASST	5 cut(s)	18, 78, 222, 419, 444
SfaNI	GCATC	1 cut(s)	240
SgrAI	CRCCGGYG	1 cut(s)	366
SinI	GGWCC	1 cut(s)	202
Sse9I	AATT	3 cut(s)	280, 316, 385
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	2 cut(s)	408, 425
SstI	GAGCTC	1 cut(s)	419
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	428
TaqI	TCGA	2 cut(s)	7, 276
TasI	AATT	3 cut(s)	280, 316, 385
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TseFI	GTSAC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	2 cut(s)	329, 459
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.