Rroxscaffold_6G00424610

Belongs to the cystatin family. Phytocystatin subfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
45768380 .. 45769028
649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00424610.1

Sequence Viewer

Length: 321 bp
ATGGCCCTCCTCTTCTCTCTCTCCGTCGCCGCCCCAGACAGCCCTGCTCTCGGTGGTTGGAAGCCGATCAAGATCATCAACGACCCCCACGTGAAGGAGATAGCGGAGTTCGCAGTGTCGGAGTACAACAAGAAATCTAAGAATAAGTTGGTGTTCCAGAGCGTCGTCAAAGGCGAGACTCAGGTGGTCGCCGGGGAAAACTTCCGGCTCGTCATTGCGGTCAAGGATAAATCCTCGGCTGTGAAATATGAGGCTGTTGTGTGGGAGAGGCTTTGGTTGAACAGTAAGATATTGACCTCCTTCAAACAAGTGAAGGAGTAG

Protein Analysis

106

Amino Acids

11.83

Weight (kDa)

9.52

Isoelectric Point (pI)

29.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cystatin PF00031 18 - 99 2.2e-14 Cystatin domain
SQAPI PF16845 23 - 104 9e-35 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000425)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47550
fragaria_vesca FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 30, 104, 218
AcvI CACGTG 1 cut(s) 91
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 50, 94
AgsI TTSAA 2 cut(s) 280, 304
Alw26I GTCTC 1 cut(s) 170
AoxI GGCC 1 cut(s) 3
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 193
BbrPI CACGTG 1 cut(s) 91
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 170
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 193
BpuMI CCSGG 1 cut(s) 193
BsaAI YACGTR 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 192, 234
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 94
Bse3DI GCAATG 1 cut(s) 213
Bse8I GATNNNNATC 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 192, 234
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 2 cut(s) 50, 94
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 1 cut(s) 194
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 2 cut(s) 192, 205
BslI CCNNNNNNNGG 2 cut(s) 50, 94
BsmAI GTCTC 1 cut(s) 170
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 66, 72
BspACI CCGC 3 cut(s) 30, 104, 218
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 192, 234
BssMI GATC 2 cut(s) 66, 72
Bst4CI ACNGT 1 cut(s) 284
Bst6I CTCTTC 1 cut(s) 17
BstBAI YACGTR 1 cut(s) 91
BstDEI CTNAG 2 cut(s) 138, 180
BstKTI GATC 2 cut(s) 69, 75
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 2 cut(s) 66, 72
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 191
BsuRI GGCC 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 124
CviJI RGCY 7 cut(s) 5, 42, 64, 208, 239, 254, 271
CviKI_1 RGCY 7 cut(s) 5, 42, 64, 208, 239, 254, 271
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 2 cut(s) 138, 180
DpnI GATC 2 cut(s) 68, 74
DpnII GATC 2 cut(s) 66, 72
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Eco72I CACGTG 1 cut(s) 91
FaiI YATR 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 192, 205
HgaI GACGC 1 cut(s) 151
HinfI GANTC 1 cut(s) 178
HpaII CCGG 2 cut(s) 192, 205
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 2 cut(s) 70, 157
Hpy99I CGWCG 2 cut(s) 29, 167
HpyAV CCTTC 3 cut(s) 88, 307, 310
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4IV ACGT 1 cut(s) 90
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 2 cut(s) 138, 180
HpySE526I ACGT 1 cut(s) 90
Kzo9I GATC 2 cut(s) 66, 72
LpnPI CCDG 6 cut(s) 48, 57, 167, 170, 205, 218
MaeII ACGT 1 cut(s) 90
MalI GATC 2 cut(s) 68, 74
MboI GATC 2 cut(s) 66, 72
MboII GAAGA 1 cut(s) 4
MlyI GAGTC 1 cut(s) 172
MmeI TCCRAC 2 cut(s) 38, 99
MnlI CCTC 6 cut(s) 17, 20, 244, 244, 261, 307
MspI CCGG 2 cut(s) 192, 205
MspR9I CCNGG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 1 cut(s) 193
NdeII GATC 2 cut(s) 66, 72
NmeAIII GCCGAG 1 cut(s) 215
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 171
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 172
PmaCI CACGTG 1 cut(s) 91
PmlI CACGTG 1 cut(s) 91
PpsI GAGTC 1 cut(s) 172
Ppu21I YACGTR 1 cut(s) 91
PspCI CACGTG 1 cut(s) 91
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 66, 72
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 193
SetI ASST 3 cut(s) 93, 186, 299
SsiI CCGC 3 cut(s) 30, 104, 218
StyD4I CCNGG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 284
TaiI ACGT 1 cut(s) 93
TatI WGTACW 1 cut(s) 123
TauI GCSGC 1 cut(s) 32
TscAI CASTG 1 cut(s) 120
TspGWI ACGGA 1 cut(s) 13
TspRI CASTG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.