Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Reverse (-)

458143 .. 458532

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G009100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCGCTCGAACTGCCTCCTTGCACTCGTGGCCCTGGTTCTTGCTCTGGTGGCCTGTGCCGCAGACGGACGGGACGTGAAGGTGGACGGTTGGCAGCCCGTAGGGGACCTGAGCGACCCCCACGTGGTAGAGATAGCAAAGTTTGCGCTGTCGGAGTTCAGCAAGCAATCGGAGCCGGTCCAGAACAAGTTGGTGTATTATAACATGGCCAAGGGCGAGACGATGGTCGAATCGGGTGTCAAGTATAAGCTCGTCATTGGGGCCACCAACGAGACGATTCCTGACCCCCTCTTCTCCCTCAATTATTATGAGGGTGTTATCTTGGAGAAGGCTTGGAAGCATTTTGGGCAATTGCTCTCCTTTGCAGCAATTCCTAAAGAAGGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

130

Amino Acids

14.13

Weight (kDa)

5.32

Isoelectric Point (pI)

30.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
AciI	CCGC	1 cut(s)	60
AcoI	YGGCCR	1 cut(s)	207
AcvI	CACGTG	1 cut(s)	124
AfiI	CCNNNNNNNGG	2 cut(s)	124, 380
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
Alw26I	GTCTC	2 cut(s)	212, 266
AoxI	GGCC	4 cut(s)	30, 51, 207, 261
ApeKI	GCWGC	2 cut(s)	94, 365
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
AspLEI	GCGC	2 cut(s)	6, 148
AspS9I	GGNCC	4 cut(s)	31, 106, 178, 261
AvaII	GGWCC	2 cut(s)	106, 178
BalI	TGGCCA	1 cut(s)	209
BauI	CACGAG	1 cut(s)	26
BbrPI	CACGTG	1 cut(s)	124
BbvI	GCAGC	2 cut(s)	106, 377
BccI	CCATC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	212, 266
BisI	GCNGC	3 cut(s)	60, 95, 366
BlsI	GCNGC	3 cut(s)	61, 96, 367
Bme1390I	CCNGG	1 cut(s)	35
Bme18I	GGWCC	2 cut(s)	106, 178
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	4 cut(s)	31, 106, 178, 261
BmiI	GGNNCC	3 cut(s)	107, 174, 262
BmrFI	CCNGG	1 cut(s)	35
BoxI	GACNNNNGTC	1 cut(s)	224
Bpu10I	CCTNAGC	1 cut(s)	110
BsaAI	YACGTR	1 cut(s)	124
BsaJI	CCNNGG	2 cut(s)	33, 210
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 380
Bse118I	RCCGGY	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	2 cut(s)	33, 210
BseLI	CCNNNNNNNGG	2 cut(s)	124, 380
BseMII	CTCAG	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	106, 377
BshFI	GGCC	4 cut(s)	32, 53, 209, 263
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	2 cut(s)	86, 119
BslI	CCNNNNNNNGG	2 cut(s)	124, 380
BsmAI	GTCTC	2 cut(s)	212, 266
BsmBI	CGTCTC	2 cut(s)	212, 266
BsmFI	GGGAC	2 cut(s)	86, 119
BsnI	GGCC	4 cut(s)	32, 53, 209, 263
BspACI	CCGC	1 cut(s)	60
BspANI	GGCC	4 cut(s)	32, 53, 209, 263
BspCNI	CTCAG	1 cut(s)	102
BspLI	GGNNCC	3 cut(s)	107, 174, 262
BsrFI	RCCGGY	1 cut(s)	175
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	33, 210
BssSI	CACGAG	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	89
Bst6I	CTCTTC	1 cut(s)	296
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstBAI	YACGTR	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	110
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstHHI	GCGC	2 cut(s)	6, 148
BstMAI	GTCTC	2 cut(s)	212, 266
BstMWI	GCNNNNNNNGC	7 cut(s)	12, 29, 50, 59, 143, 172, 346
BstNI	CCWGG	1 cut(s)	35
BstPAI	GACNNNNGTC	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	33
BstV1I	GCAGC	2 cut(s)	106, 377
BsuRI	GGCC	4 cut(s)	32, 53, 209, 263
BtrI	CACGTC	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	164
CfoI	GCGC	2 cut(s)	6, 148
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	4 cut(s)	31, 106, 178, 261
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	8 cut(s)	32, 53, 97, 175, 209, 250, 263, 332
CviKI_1	RGCY	8 cut(s)	32, 53, 97, 175, 209, 250, 263, 332
DdeI	CTNAG	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	210
Eco47I	GGWCC	2 cut(s)	106, 178
Eco72I	CACGTG	1 cut(s)	124
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	2 cut(s)	212, 266
FaeI	CATG	1 cut(s)	208
FaiI	YATR	4 cut(s)	201, 206, 246, 309
FaqI	GGGAC	2 cut(s)	86, 119
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	60, 95, 366
Fsp4HI	GCNGC	3 cut(s)	60, 95, 366
GlaI	GCGC	2 cut(s)	5, 147
GluI	GCNGC	3 cut(s)	60, 95, 366
HaeIII	GGCC	4 cut(s)	32, 53, 209, 263
HapII	CCGG	1 cut(s)	176
HhaI	GCGC	2 cut(s)	6, 148
Hin1II	CATG	1 cut(s)	208
Hin6I	GCGC	2 cut(s)	4, 146
HinP1I	GCGC	2 cut(s)	4, 146
HinfI	GANTC	2 cut(s)	230, 277
HpaII	CCGG	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	154, 172
Hpy188III	TCNNGA	2 cut(s)	181, 281
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	3 cut(s)	73, 322, 374
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4IV	ACGT	2 cut(s)	75, 123
HpyCH4V	TGCA	2 cut(s)	23, 365
HpyF10VI	GCNNNNNNNGC	7 cut(s)	12, 29, 50, 59, 143, 172, 346
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	2 cut(s)	75, 123
Hsp92II	CATG	1 cut(s)	208
HspAI	GCGC	2 cut(s)	4, 146
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	8 cut(s)	20, 32, 47, 67, 122, 189, 194, 294
Lsp1109I	GCAGC	2 cut(s)	106, 377
MaeII	ACGT	2 cut(s)	75, 123
MboII	GAAGA	1 cut(s)	283
MfeI	CAATTG	1 cut(s)	350
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	4 cut(s)	301, 350, 369, 385
MluNI	TGGCCA	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	4 cut(s)	26, 299, 304, 308
Mox20I	TGGCCA	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	1 cut(s)	388
Msp20I	TGGCCA	1 cut(s)	209
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	35
MunI	CAATTG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	7 cut(s)	12, 29, 50, 59, 143, 172, 346
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	3 cut(s)	107, 174, 262
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	230, 277
PkrI	GCNGC	3 cut(s)	61, 96, 367
PmaCI	CACGTG	1 cut(s)	124
PmlI	CACGTG	1 cut(s)	124
Ppu21I	YACGTR	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	106
PshAI	GACNNNNGTC	1 cut(s)	224
PsiI	TTATAA	1 cut(s)	201
Psp5II	RGGWCCY	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	33
PspCI	CACGTG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	3 cut(s)	107, 174, 262
PspPI	GGNCC	4 cut(s)	31, 106, 178, 261
PspPPI	RGGWCCY	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	388
SatI	GCNGC	3 cut(s)	60, 95, 366
Sau96I	GGNCC	4 cut(s)	31, 106, 178, 261
ScrFI	CCNGG	1 cut(s)	35
SetI	ASST	5 cut(s)	78, 84, 111, 126, 252
SinI	GGWCC	2 cut(s)	106, 178
Sse9I	AATT	4 cut(s)	301, 350, 369, 385
SsiI	CCGC	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	89
TaiI	ACGT	2 cut(s)	78, 126
TaqI	TCGA	2 cut(s)	8, 228
TasI	AATT	4 cut(s)	301, 350, 369, 385
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	2 cut(s)	230, 277
Tru1I	TTAA	1 cut(s)	388
Tru9I	TTAA	1 cut(s)	388
TseI	GCWGC	2 cut(s)	94, 365
TspGWI	ACGGA	1 cut(s)	81
VpaK11BI	GGWCC	2 cut(s)	106, 178
XagI	CCTNNNNNAGG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.