Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Forward (+)

29167593 .. 29169880

Gene Structure 2288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G335600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGGTGGATTCAACACAAGAGGCAACCAACCCCCATCCGATCTGATTATTGAAGCAAATAAAAGAATCTATACAAAACTAGCAAAAGATGTGGAGTTGAGACCAGCAAAAGATGTGGAGTTGAAACCAACACAGGATGTGGAGTTGAAACCATCAAAGGCTGTGGAGTTGAAACTAGCAAGAGTTGTGGTGTTGAATGCAGAAAAGATTGTGGAAGACTTGAAGTTGGTTAAAGATATTCAGGAGATAAAATCAAAGCCAATATACTCACAGATAAGTGAAGTTGCAACAGAGCATCAAGTGCATCCTCCCTGGGAGCTTTTGGACCCCAACGATCCAAATGTGATAAATGCCGCCAAGTTTGCGGTCTTGGAATACAACAAGAACGTCACCAGCAGCAGCAACAAGCTACTTTTCCAAAAAGTGAATTGGTGTGAATACGCTTATCTAGCCGGCGCATTTTATGGGCTCGATATTGCCGCAAAAAATGAGTCGTTACCTTCTCCGCCACAGAATTATATTGTCGGGGTTTGGGCCAGACTTAACAGACCCTTGAAATTGAGAGTCTATGCTTATTTTGAGTATGATAGTGCAACTGCTTATGTTGCACTGACACTCCACCAAGCCCGAGTGTCGGACACTCCTCGGACTCCACTATCAAAACACTCTCCATATACGGCCAAGACACTCTCCGAATACGGGTCAACTCATACTTATGGTCAACTAATGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

245

Amino Acids

27.54

Weight (kDa)

8.69

Isoelectric Point (pI)

31.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	354, 365, 480, 506
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	678
AfiI	CCNNNNNNNGG	2 cut(s)	634, 699
AgsI	TTSAA	8 cut(s)	13, 53, 124, 148, 172, 196, 223, 556
AjnI	CCWGG	1 cut(s)	311
AluBI	AGCT	2 cut(s)	319, 409
AluI	AGCT	2 cut(s)	319, 409
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	329
Ama87I	CYCGRG	1 cut(s)	627
AoxI	GGCC	2 cut(s)	534, 678
ApeKI	GCWGC	2 cut(s)	396, 399
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AspLEI	GCGC	1 cut(s)	458
AspS9I	GGNCC	2 cut(s)	325, 534
AsuHPI	GGTGA	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	627
AvaII	GGWCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	471
BbsI	GAAGAC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	408, 411
BccI	CCATC	2 cut(s)	43, 160
BceAI	ACGGC	1 cut(s)	693
BciT130I	CCWGG	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	3 cut(s)	80, 176, 449
BisI	GCNGC	4 cut(s)	354, 397, 400, 480
BlsI	GCNGC	4 cut(s)	355, 398, 401, 481
Bme1390I	CCNGG	1 cut(s)	313
Bme18I	GGWCC	1 cut(s)	325
BmeT110I	CYCGRG	1 cut(s)	627
BmgT120I	GGNCC	2 cut(s)	325, 534
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	313
BmsI	GCATC	2 cut(s)	304, 313
BpiI	GAAGAC	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	3 cut(s)	311, 312, 644
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	2 cut(s)	634, 699
Bse118I	RCCGGY	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	313
BseDI	CCNNGG	3 cut(s)	311, 312, 644
BseGI	GGATG	3 cut(s)	35, 142, 304
BseLI	CCNNNNNNNGG	2 cut(s)	634, 699
BseRI	GAGGAG	1 cut(s)	633
BseXI	GCAGC	2 cut(s)	408, 411
BshFI	GGCC	2 cut(s)	536, 680
BsiHKCI	CYCGRG	1 cut(s)	627
BsiSI	CCGG	1 cut(s)	453
BslI	CCNNNNNNNGG	2 cut(s)	634, 699
BsmAI	GTCTC	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	536, 680
Bso31I	GGTCTC	1 cut(s)	94
BsoBI	CYCGRG	1 cut(s)	627
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	40, 334
BspACI	CCGC	4 cut(s)	354, 365, 480, 506
BspANI	GGCC	2 cut(s)	536, 680
BspLI	GGNNCC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	452
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	3 cut(s)	311, 312, 644
BssMI	GATC	2 cut(s)	40, 334
Bst2UI	CCWGG	1 cut(s)	313
BstAPI	GCANNNNNTGC	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	454
BstF5I	GGATG	3 cut(s)	35, 142, 304
BstHHI	GCGC	1 cut(s)	458
BstKTI	GATC	2 cut(s)	43, 337
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	2 cut(s)	40, 334
BstMWI	GCNNNNNNNGC	4 cut(s)	301, 362, 449, 605
BstNI	CCWGG	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	408, 411
BstV2I	GAAGAC	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	536, 680
BtsCI	GGATG	3 cut(s)	35, 142, 304
BtsIMutI	CAGTG	1 cut(s)	608
Cac8I	GCNNGC	1 cut(s)	454
CfoI	GCGC	1 cut(s)	458
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	2 cut(s)	325, 534
CspCI	CAANNNNNGTGG	8 cut(s)	72, 96, 107, 131, 144, 168, 179, 203
CviJI	RGCY	9 cut(s)	161, 259, 319, 409, 452, 469, 536, 626, 680
CviKI_1	RGCY	9 cut(s)	161, 259, 319, 409, 452, 469, 536, 626, 680
DpnI	GATC	2 cut(s)	42, 336
DpnII	GATC	2 cut(s)	40, 334
EaeI	YGGCCR	1 cut(s)	678
EciI	GGCGGA	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	471
Eco31I	GGTCTC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	325
Eco88I	CYCGRG	1 cut(s)	627
EcoRII	CCWGG	1 cut(s)	311
EcoT38I	GRGCYC	1 cut(s)	471
Fnu4HI	GCNGC	4 cut(s)	354, 397, 400, 480
FokI	GGATG	3 cut(s)	22, 149, 291
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	4 cut(s)	354, 397, 400, 480
FspBI	CTAG	3 cut(s)	80, 176, 449
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	4 cut(s)	354, 397, 400, 480
HaeIII	GGCC	2 cut(s)	536, 680
HapII	CCGG	1 cut(s)	453
HhaI	GCGC	1 cut(s)	458
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HincII	GTYRAC	2 cut(s)	705, 722
HindII	GTYRAC	2 cut(s)	705, 722
HinfI	GANTC	5 cut(s)	9, 66, 491, 564, 649
HpaII	CCGG	1 cut(s)	453
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	2 cut(s)	705, 722
Hpy188I	TCNGA	5 cut(s)	40, 45, 637, 648, 694
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	2 cut(s)	705, 722
HpyAV	CCTTC	1 cut(s)	510
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	5 cut(s)	200, 287, 304, 593, 608
HpyF10VI	GCNNNNNNNGC	4 cut(s)	301, 362, 449, 605
HpySE526I	ACGT	1 cut(s)	387
HspAI	GCGC	1 cut(s)	456
KroI	GCCGGC	1 cut(s)	452
KroNI	GCCGGC	1 cut(s)	454
Kzo9I	GATC	2 cut(s)	40, 334
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	8 cut(s)	117, 119, 227, 298, 325, 406, 466, 550
Lsp1109I	GCAGC	2 cut(s)	408, 411
LweI	GCATC	2 cut(s)	304, 313
MaeI	CTAG	3 cut(s)	80, 176, 449
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	2 cut(s)	388, 495
MalI	GATC	2 cut(s)	42, 336
MboI	GATC	2 cut(s)	40, 334
MboII	GAAGA	1 cut(s)	227
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	3 cut(s)	427, 514, 557
MlyI	GAGTC	3 cut(s)	500, 573, 643
MmeI	TCCRAC	1 cut(s)	615
MnlI	CCTC	3 cut(s)	14, 318, 654
MroNI	GCCGGC	1 cut(s)	452
MseI	TTAA	3 cut(s)	231, 543, 733
MslI	CAYNNNNRTG	1 cut(s)	714
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	1 cut(s)	313
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	4 cut(s)	301, 362, 449, 605
NaeI	GCCGGC	1 cut(s)	454
NdeII	GATC	2 cut(s)	40, 334
NgoMIV	GCCGGC	1 cut(s)	452
NlaIV	GGNNCC	1 cut(s)	327
NmuCI	GTSAC	1 cut(s)	388
PasI	CCCWGGG	1 cut(s)	312
PctI	GAATGC	1 cut(s)	202
PdiI	GCCGGC	1 cut(s)	454
PfeI	GAWTC	2 cut(s)	9, 66
PkrI	GCNGC	4 cut(s)	355, 398, 401, 481
PleI	GAGTC	3 cut(s)	499, 572, 643
PpsI	GAGTC	3 cut(s)	499, 572, 643
Psp6I	CCWGG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	2 cut(s)	325, 534
RseI	CAYNNNNRTG	1 cut(s)	714
SaqAI	TTAA	3 cut(s)	231, 543, 733
SatI	GCNGC	4 cut(s)	354, 397, 400, 480
Sau3AI	GATC	2 cut(s)	40, 334
Sau96I	GGNCC	2 cut(s)	325, 534
SchI	GAGTC	3 cut(s)	500, 573, 643
ScrFI	CCNGG	1 cut(s)	313
SduI	GDGCHC	1 cut(s)	471
SetI	ASST	4 cut(s)	321, 390, 411, 502
SfaNI	GCATC	2 cut(s)	304, 313
SinI	GGWCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	714
Sse9I	AATT	3 cut(s)	427, 514, 557
SsiI	CCGC	4 cut(s)	354, 365, 480, 506
SspMI	CTAG	3 cut(s)	80, 176, 449
StyD4I	CCNGG	1 cut(s)	311
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	1 cut(s)	471
TasI	AATT	3 cut(s)	427, 514, 557
TauI	GCSGC	2 cut(s)	356, 482
TfiI	GAWTC	2 cut(s)	9, 66
Tru1I	TTAA	3 cut(s)	231, 543, 733
Tru9I	TTAA	3 cut(s)	231, 543, 733
TscAI	CASTG	1 cut(s)	615
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	2 cut(s)	396, 399
Tsp45I	GTSAC	1 cut(s)	388
TspRI	CASTG	1 cut(s)	615
VpaK11BI	GGWCC	1 cut(s)	325
XspI	CTAG	3 cut(s)	80, 176, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.