Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Reverse (-)

22614754 .. 22615125

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g21450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCATCCTCATTGCTTCTTTCTCGCACTCTTTGCTCTGCTGGTTTCTCTGGCAACCGCTACTACAACAAACAACGTTCCCGGTAACTGGAGGTCTATAGACGGCATCAATTTAAATGCGACGGAGATCGGAGAGTGGGCCGTTTCCGAGTACAACAAGAATGCCACAAACAAATTAGTATTTGAAACAGTGATTTCGGCTCGGACTTCATTTTATGAATCAGGCACATTATATTTGCTTGTTGTTGCGGCCAAGGACGAGTCTTTGCCCAATCCCACTGGAAAGTACAAAACAGAAGTACTCGATAAGGATGGAGGGCCGCGGGAATTGATAGCCTTTTTCAAGATAGAGGCCGTAGAAGCTAATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

124

Amino Acids

13.53

Weight (kDa)

5.09

Isoelectric Point (pI)

30.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	39 - 104	8.9e-12	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	322
AciI	CCGC	4 cut(s)	57, 248, 320, 322
AclI	AACGTT	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	249
AfaI	GTAC	3 cut(s)	152, 287, 300
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	185, 343
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
AoxI	GGCC	4 cut(s)	138, 249, 317, 351
AspS9I	GGNCC	2 cut(s)	138, 317
AsuC2I	CCSGG	1 cut(s)	81
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	3 cut(s)	118, 125, 338
BcnI	CCSGG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	96
BisI	GCNGC	2 cut(s)	249, 320
BlsI	GCNGC	2 cut(s)	250, 321
BmcAI	AGTACT	1 cut(s)	300
Bme1390I	CCNGG	1 cut(s)	81
BmgT120I	GGNCC	2 cut(s)	138, 317
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	2 cut(s)	13, 114
BpmI	CTGGAG	1 cut(s)	109
BpuMI	CCSGG	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	252, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse1I	ACTGG	2 cut(s)	92, 283
Bse3DI	GCAATG	1 cut(s)	10
BseDI	CCNNGG	2 cut(s)	252, 320
BseGI	GGATG	2 cut(s)	4, 316
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	10
BseNI	ACTGG	2 cut(s)	92, 283
Bsh1236I	CGCG	1 cut(s)	322
BshFI	GGCC	4 cut(s)	140, 251, 319, 353
BsiSI	CCGG	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	4 cut(s)	140, 251, 319, 353
Bsp143I	GATC	1 cut(s)	126
BspACI	CCGC	4 cut(s)	57, 248, 320, 322
BspANI	GGCC	4 cut(s)	140, 251, 319, 353
BspFNI	CGCG	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	92, 283
BssECI	CCNNGG	2 cut(s)	252, 320
BssMI	GATC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	190
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstDSI	CCRYGG	1 cut(s)	320
BstF5I	GGATG	2 cut(s)	4, 316
BstFNI	CGCG	1 cut(s)	322
BstKTI	GATC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 359
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	96
BstUI	CGCG	1 cut(s)	322
BsuRI	GGCC	4 cut(s)	140, 251, 319, 353
BtgI	CCRYGG	1 cut(s)	320
BtsCI	GGATG	2 cut(s)	4, 316
BtsIMutI	CAGTG	2 cut(s)	195, 276
Cfr13I	GGNCC	2 cut(s)	138, 317
Cfr42I	CCGCGG	1 cut(s)	323
Csp6I	GTAC	3 cut(s)	151, 286, 299
CviJI	RGCY	7 cut(s)	140, 200, 251, 319, 335, 353, 362
CviKI_1	RGCY	7 cut(s)	140, 200, 251, 319, 335, 353, 362
CviQI	GTAC	3 cut(s)	151, 286, 299
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
DraI	TTTAAA	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	252
FaiI	YATR	3 cut(s)	98, 216, 232
FauI	CCCGC	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	249, 320
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	2 cut(s)	249, 320
GluI	GCNGC	2 cut(s)	249, 320
GsuI	CTGGAG	1 cut(s)	109
HaeIII	GGCC	4 cut(s)	140, 251, 319, 353
HapII	CCGG	1 cut(s)	81
HinfI	GANTC	2 cut(s)	218, 260
HpaII	CCGG	1 cut(s)	81
Hpy188I	TCNGA	3 cut(s)	131, 148, 204
Hpy188III	TCNNGA	1 cut(s)	343
Hpy99I	CGWCG	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 359
HpySE526I	ACGT	1 cut(s)	75
KspI	CCGCGG	1 cut(s)	323
Kzo9I	GATC	1 cut(s)	126
LpnPI	CCDG	6 cut(s)	26, 35, 73, 94, 207, 264
LweI	GCATC	2 cut(s)	13, 114
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MluCI	AATT	3 cut(s)	109, 173, 326
MlyI	GAGTC	1 cut(s)	269
MnlI	CCTC	4 cut(s)	18, 84, 308, 343
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	166
MvnI	CGCG	1 cut(s)	322
MwoI	GCNNNNNNNGC	2 cut(s)	32, 359
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	1 cut(s)	126
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	250, 321
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Psp1406I	AACGTT	1 cut(s)	75
PspPI	GGNCC	2 cut(s)	138, 317
RsaI	GTAC	3 cut(s)	152, 287, 300
RsaNI	GTAC	3 cut(s)	151, 286, 299
SacII	CCGCGG	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	2 cut(s)	249, 320
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	2 cut(s)	138, 317
ScaI	AGTACT	1 cut(s)	300
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	3 cut(s)	78, 95, 364
SfaNI	GCATC	2 cut(s)	13, 114
SfcI	CTRYAG	1 cut(s)	96
Sfr303I	CCGCGG	1 cut(s)	323
SgrBI	CCGCGG	1 cut(s)	323
SmiI	ATTTAAAT	1 cut(s)	114
Sse9I	AATT	3 cut(s)	109, 173, 326
SsiI	CCGC	4 cut(s)	57, 248, 320, 322
SspI	AATATT	1 cut(s)	367
StyD4I	CCNGG	1 cut(s)	79
StyI	CCWWGG	1 cut(s)	252
SwaI	ATTTAAAT	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	303
TasI	AATT	3 cut(s)	109, 173, 326
TatI	WGTACW	3 cut(s)	150, 285, 298
TauI	GCSGC	2 cut(s)	251, 322
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	2 cut(s)	195, 283
TspDTI	ATGAA	2 cut(s)	198, 231
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	2 cut(s)	195, 283
ZrmI	AGTACT	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.