Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Forward (+)

4904974 .. 4905704

Gene Structure 731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g08240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCCTTCTCATTGCTACCTCGTCCTCCTTGCTTTCTTCCTTCCCGTGGTCGTCGCTTCCACAGAGAAGCTCTACCTCATCGGTACCTGGACTCCTCTCAACACAAGCGATCCGCGTGCAATAAGAGTTGCAGAGTGTGCAGTCACCGAGTACAACAAGAACGCTATAAAGAAGTTAGTTTTTGAGCGCCTAGTTTCCGGTAGAAAAGTATTTGCATCAGGTGCCTATTATGAGATCGTTATTGCTGCCAAGAATGCTACGTTGCCTGACCCTCCTTCGAATTATCTGGCTTCTGTGTGGGTTCAGTTTATGAAGACTAGATTGAGGGGATTTGAGAAGGTCAAGACTCATGATACCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

121

Amino Acids

13.53

Weight (kDa)

9.33

Isoelectric Point (pI)

22.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	34 - 112	1.1e-12	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	83
AccB1I	GGYRCC	2 cut(s)	83, 221
AccII	CGCG	1 cut(s)	115
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	1 cut(s)	104
AfaI	GTAC	2 cut(s)	85, 152
AfiI	CCNNNNNNNGG	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	86
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
AlwI	GGATC	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	245
Asp718I	GGTACC	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	136
AsuII	TTCGAA	1 cut(s)	278
BanI	GGYRCC	2 cut(s)	83, 221
BbsI	GAAGAC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	232
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	1 cut(s)	88
BfaI	CTAG	2 cut(s)	191, 318
BfoI	RGCGCY	1 cut(s)	190
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	85, 223
BmrFI	CCNGG	1 cut(s)	88
BmsI	GCATC	1 cut(s)	224
BpiI	GAAGAC	1 cut(s)	320
Bpu14I	TTCGAA	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMI	GCAATG	1 cut(s)	10
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	115
BshNI	GGYRCC	2 cut(s)	83, 221
BsiSI	CCGG	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	259
Bsp119I	TTCGAA	1 cut(s)	278
Bsp143I	GATC	2 cut(s)	109, 234
BspACI	CCGC	1 cut(s)	113
BspFNI	CGCG	1 cut(s)	115
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	2 cut(s)	85, 223
BspPI	GGATC	1 cut(s)	104
BspT104I	TTCGAA	1 cut(s)	278
BspT107I	GGYRCC	2 cut(s)	83, 221
BsrDI	GCAATG	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	2 cut(s)	109, 234
Bst2UI	CCWGG	1 cut(s)	88
BstAPI	GCANNNNNTGC	2 cut(s)	137, 221
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	117
BstDSI	CCRYGG	1 cut(s)	45
BstFNI	CGCG	1 cut(s)	115
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	2 cut(s)	112, 237
BstMBI	GATC	2 cut(s)	109, 234
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 221, 254
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	86
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	232
BstV2I	GAAGAC	1 cut(s)	320
BtgI	CCRYGG	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	117
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	84, 151
CviAII	CATG	1 cut(s)	350
CviJI	RGCY	2 cut(s)	70, 290
CviKI_1	RGCY	2 cut(s)	70, 290
CviQI	GTAC	2 cut(s)	84, 151
DpnI	GATC	2 cut(s)	111, 236
DpnII	GATC	2 cut(s)	109, 234
EcoRII	CCWGG	1 cut(s)	86
FaeI	CATG	1 cut(s)	353
FaiI	YATR	4 cut(s)	167, 231, 311, 351
FatI	CATG	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	2 cut(s)	191, 318
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	246
HaeII	RGCGCY	1 cut(s)	190
HapII	CCGG	1 cut(s)	198
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	353
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HinfI	GANTC	2 cut(s)	91, 346
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	1 cut(s)	136
Hpy188III	TCNNGA	2 cut(s)	343, 350
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	4 cut(s)	15, 50, 285, 331
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	4 cut(s)	119, 131, 140, 215
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 221, 254
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	353
HspAI	GCGC	1 cut(s)	187
KpnI	GGTACC	1 cut(s)	87
Kzo9I	GATC	2 cut(s)	109, 234
LpnPI	CCDG	6 cut(s)	73, 100, 204, 211, 272, 279
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	2 cut(s)	191, 318
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	2 cut(s)	111, 236
MboI	GATC	2 cut(s)	109, 234
MboII	GAAGA	2 cut(s)	28, 325
MluCI	AATT	1 cut(s)	280
MlyI	GAGTC	2 cut(s)	85, 340
MnlI	CCTC	6 cut(s)	29, 35, 86, 105, 282, 318
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	88
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	3 cut(s)	137, 221, 254
NdeII	GATC	2 cut(s)	109, 234
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	2 cut(s)	85, 223
NmuCI	GTSAC	1 cut(s)	142
NspV	TTCGAA	1 cut(s)	278
PagI	TCATGA	1 cut(s)	349
PctI	GAATGC	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	247
PleI	GAGTC	2 cut(s)	85, 340
PpsI	GAGTC	2 cut(s)	85, 340
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	85, 223
RsaI	GTAC	2 cut(s)	85, 152
RsaNI	GTAC	2 cut(s)	84, 151
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	2 cut(s)	109, 234
SchI	GAGTC	2 cut(s)	85, 340
ScrFI	CCNGG	1 cut(s)	88
SetI	ASST	7 cut(s)	21, 72, 78, 89, 223, 263, 342
SfaNI	GCATC	1 cut(s)	224
SfuI	TTCGAA	1 cut(s)	278
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	1 cut(s)	113
SspMI	CTAG	2 cut(s)	191, 318
StyD4I	CCNGG	1 cut(s)	86
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	1 cut(s)	278
TasI	AATT	1 cut(s)	280
TatI	WGTACW	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	326
XspI	CTAG	2 cut(s)	191, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.