Rroxscaffold_1G00065750

Belongs to the cystatin family. Phytocystatin subfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
87337496 .. 87337876
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00065750.1

Sequence Viewer

Length: 381 bp
ATGACGAAACGTGTTTTCTCGTTCGACCTCTTTACTTTCCTCCTTCTCGTCGGCCTCTTTGCTCACCTGAGTCACCTCCTGCTCGCCGACCCCGATGACAATCCTAGCTACGGCGCTTATCACCCCATTGAGGACATCCACGACCCTCATGTGATAGAGATCGCGGAGTTTGCTGTCTCCGAGCTCAACAAGGAACTACGGAAGAAGCTGGTGTTTCAGAGCGTGGTTCGAGGTGAGAGTCAGGCTGTAGCGGGACAAAATTATAAGCTTGTCGTCGCGGTCAAGGACTCCACCTCCACTGTGAATTATGAGTGTGTTGTCTGGGAGAAGGTTTGGCTAAAGTTTAGGAAATTGACCTCCTTTCATGAGGTTAAAACCTAA

Protein Analysis

126

Amino Acids

14.45

Weight (kDa)

6.28

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cystatin PF00031 38 - 123 7.3e-13 Cystatin domain
SQAPI PF16845 43 - 124 1.2e-31 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000425)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47550
fragaria_vesca FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AccII CGCG 2 cut(s) 164, 278
AciI CCGC 3 cut(s) 164, 251, 278
AfiI CCNNNNNNNGG 2 cut(s) 110, 130
AflIII ACRYGT 1 cut(s) 10
AluBI AGCT 4 cut(s) 108, 184, 208, 268
AluI AGCT 4 cut(s) 108, 184, 208, 268
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 181
AoxI GGCC 1 cut(s) 52
AspLEI GCGC 1 cut(s) 116
AsuHPI GGTGA 4 cut(s) 56, 65, 113, 245
BanII GRGCYC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 186
BceAI ACGGC 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 117
BsaBI GATNNNNATC 2 cut(s) 99, 158
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 130
Bse8I GATNNNNATC 2 cut(s) 99, 158
BseGI GGATG 1 cut(s) 135
BseJI GATNNNNATC 2 cut(s) 99, 158
BseLI CCNNNNNNNGG 2 cut(s) 110, 130
BseMII CTCAG 1 cut(s) 59
Bsh1236I CGCG 2 cut(s) 164, 278
BshFI GGCC 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 186
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 2 cut(s) 110, 130
BsmAI GTCTC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 267
BsnI GGCC 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 1 cut(s) 159
BspACI CCGC 3 cut(s) 164, 251, 278
BspANI GGCC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 60
BspFNI CGCG 2 cut(s) 164, 278
BspHI TCATGA 1 cut(s) 364
BssMI GATC 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 301
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 135
BstFNI CGCG 2 cut(s) 164, 278
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 1 cut(s) 162
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 1 cut(s) 159
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstSFI CTRYAG 1 cut(s) 246
BstUI CGCG 2 cut(s) 164, 278
BsuRI GGCC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 84
CciI TCATGA 1 cut(s) 364
CfoI GCGC 1 cut(s) 116
CviAII CATG 2 cut(s) 149, 365
CviJI RGCY 7 cut(s) 54, 108, 184, 208, 245, 268, 337
CviKI_1 RGCY 7 cut(s) 54, 108, 184, 208, 245, 268, 337
DdeI CTNAG 1 cut(s) 68
DpnI GATC 1 cut(s) 161
DpnII GATC 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 186
Eco53kI GAGCTC 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 186
FaeI CATG 2 cut(s) 152, 368
FaiI YATR 4 cut(s) 150, 264, 309, 366
FaqI GGGAC 1 cut(s) 267
FatI CATG 2 cut(s) 148, 364
FauI CCCGC 1 cut(s) 244
FokI GGATG 1 cut(s) 122
FriOI GRGCYC 1 cut(s) 186
FspBI CTAG 1 cut(s) 105
GlaI GCGC 1 cut(s) 115
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 54
HhaI GCGC 1 cut(s) 116
Hin1II CATG 2 cut(s) 152, 368
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 3 cut(s) 70, 238, 287
HphI GGTGA 4 cut(s) 56, 65, 113, 245
Hpy188I TCNGA 2 cut(s) 181, 219
Hpy188III TCNNGA 1 cut(s) 365
Hpy99I CGWCG 2 cut(s) 53, 278
HpyAV CCTTC 2 cut(s) 53, 322
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 1 cut(s) 10
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 2 cut(s) 152, 368
HspAI GCGC 1 cut(s) 114
Kzo9I GATC 1 cut(s) 159
LpnPI CCDG 5 cut(s) 80, 92, 194, 227, 307
MaeI CTAG 1 cut(s) 105
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 71
MalI GATC 1 cut(s) 161
MboI GATC 1 cut(s) 159
MboII GAAGA 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 3 cut(s) 259, 304, 350
MlyI GAGTC 3 cut(s) 79, 247, 281
MseI TTAA 1 cut(s) 372
MvnI CGCG 2 cut(s) 164, 278
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 1 cut(s) 159
NlaIII CATG 2 cut(s) 152, 368
NmuCI GTSAC 1 cut(s) 71
PagI TCATGA 1 cut(s) 364
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PleI GAGTC 3 cut(s) 78, 246, 281
PpsI GAGTC 3 cut(s) 78, 246, 281
PsiI TTATAA 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 186
SacI GAGCTC 1 cut(s) 186
SaqAI TTAA 1 cut(s) 372
Sau3AI GATC 1 cut(s) 159
SchI GAGTC 3 cut(s) 79, 247, 281
SduI GDGCHC 1 cut(s) 186
SfcI CTRYAG 1 cut(s) 246
Sse9I AATT 3 cut(s) 259, 304, 350
SsiI CCGC 3 cut(s) 164, 251, 278
SspMI CTAG 1 cut(s) 105
SstI GAGCTC 1 cut(s) 186
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 1 cut(s) 13
TaqI TCGA 2 cut(s) 24, 229
TasI AATT 3 cut(s) 259, 304, 350
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 1 cut(s) 304
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 353
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 1 cut(s) 304
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.