Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Forward (+)

2091252 .. 2093416

Gene Structure 2165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCTTCGTCCTCATTGCTTGCTCGTTCTCTTGGCTCTGTTGTTTCCCATTCTCACCGCTGCCGCAGATGGCCCTACTTTTTGGGTGCCTATAAAGAACACCAGCGACCCAGTTGTGGTGGAGGTTGGACAGTTTGCGGTCTCCGAGTATGACAAGAATACAACGAAGAAATTAATCTTTGAAAAAGTGGTATCGGGTTTGGCCGCAAACAATTCTGGTGTTATGTATTTGCTTCAAATTGCGGCAAAAAATGAATCCTTGCCTATCCCTGCTCAGAATTATACGACCGGTGTCTGGGCCAGATACCGCGAACCGTTAATGTTGCTCGCCTTTCATAAAACTAATGAAACTACTGTCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

121

Amino Acids

13.28

Weight (kDa)

6.73

Isoelectric Point (pI)

25.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	31 - 106	2.4e-16	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	85
AccII	CGCG	1 cut(s)	309
AciI	CCGC	6 cut(s)	57, 63, 137, 204, 242, 307
AcoI	YGGCCR	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	115, 294
AgeI	ACCGGT	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	182, 236
Alw26I	GTCTC	1 cut(s)	145
AoxI	GGCC	3 cut(s)	70, 201, 297
ApeKI	GCWGC	1 cut(s)	59
AseI	ATTAAT	1 cut(s)	173
AsiGI	ACCGGT	1 cut(s)	287
AspS9I	GGNCC	2 cut(s)	71, 297
AsuHPI	GGTGA	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	145
BisI	GCNGC	4 cut(s)	60, 63, 204, 243
BlsI	GCNGC	4 cut(s)	61, 64, 205, 244
BmgT120I	GGNCC	2 cut(s)	71, 297
BmiI	GGNNCC	1 cut(s)	87
BmrI	ACTGGG	1 cut(s)	104
BmuI	ACTGGG	1 cut(s)	104
BoxI	GACNNNNGTC	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	145
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 294
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	2 cut(s)	115, 294
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	287
BseNI	ACTGG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	46
Bsh1236I	CGCG	1 cut(s)	309
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	3 cut(s)	72, 203, 299
BshNI	GGYRCC	1 cut(s)	85
BshTI	ACCGGT	1 cut(s)	287
BsiEI	CGRYCG	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	115, 294
BsmAI	GTCTC	1 cut(s)	145
BsnI	GGCC	3 cut(s)	72, 203, 299
Bso31I	GGTCTC	1 cut(s)	145
BspACI	CCGC	6 cut(s)	57, 63, 137, 204, 242, 307
BspANI	GGCC	3 cut(s)	72, 203, 299
BspCNI	CTCAG	1 cut(s)	286
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	85
BspTNI	GGTCTC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	13
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	287
Bst4CI	ACNGT	3 cut(s)	132, 315, 355
BstC8I	GCNNGC	2 cut(s)	20, 327
BstDEI	CTNAG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	309
BstMAI	GTCTC	1 cut(s)	145
BstMCI	CGRYCG	1 cut(s)	288
BstPAI	GACNNNNGTC	1 cut(s)	290
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	46
BsuRI	GGCC	3 cut(s)	72, 203, 299
Cac8I	GCNNGC	2 cut(s)	20, 327
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	71, 297
CspAI	ACCGGT	1 cut(s)	287
CviJI	RGCY	4 cut(s)	35, 72, 203, 299
CviKI_1	RGCY	4 cut(s)	35, 72, 203, 299
DdeI	CTNAG	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	145
FaiI	YATR	5 cut(s)	92, 150, 224, 282, 336
Fnu4HI	GCNGC	4 cut(s)	60, 63, 204, 243
Fsp4HI	GCNGC	4 cut(s)	60, 63, 204, 243
GluI	GCNGC	4 cut(s)	60, 63, 204, 243
HaeIII	GGCC	3 cut(s)	72, 203, 299
HapII	CCGG	1 cut(s)	288
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	145, 276
HpyCH4III	ACNGT	3 cut(s)	132, 315, 355
HpyF3I	CTNAG	1 cut(s)	273
LpnPI	CCDG	7 cut(s)	115, 123, 201, 280, 282, 301, 313
Lsp1109I	GCAGC	1 cut(s)	46
MboII	GAAGA	1 cut(s)	178
MluCI	AATT	4 cut(s)	170, 211, 237, 277
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	2 cut(s)	21, 115
MseI	TTAA	2 cut(s)	173, 317
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	309
NlaIV	GGNNCC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	254
PinAI	ACCGGT	1 cut(s)	287
PkrI	GCNGC	4 cut(s)	61, 64, 205, 244
PshAI	GACNNNNGTC	1 cut(s)	290
PshBI	ATTAAT	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	2 cut(s)	71, 297
SaqAI	TTAA	2 cut(s)	173, 317
SatI	GCNGC	4 cut(s)	60, 63, 204, 243
Sau96I	GGNCC	2 cut(s)	71, 297
SetI	ASST	1 cut(s)	126
Sse9I	AATT	4 cut(s)	170, 211, 237, 277
SsiI	CCGC	6 cut(s)	57, 63, 137, 204, 242, 307
TaaI	ACNGT	3 cut(s)	132, 315, 355
TaqI	TCGA	1 cut(s)	357
TasI	AATT	4 cut(s)	170, 211, 237, 277
TauI	GCSGC	3 cut(s)	65, 206, 245
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	2 cut(s)	173, 317
Tru9I	TTAA	2 cut(s)	173, 317
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	3 cut(s)	267, 323, 360
VspI	ATTAAT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.