Rh3BG047300

Belongs to the cystatin family. Phytocystatin subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
3043543 .. 3061115
17573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG047300.1

Sequence Viewer

Length: 456 bp
ATGATGCGCCCTCATGTGCTCCTCGCGTTGCTTGCTCTTCTTGTTCCTCTTGTTGTTGCCGATCGTATTGTTGTTTGGAAGCCTATAAACAGCACTACCGACCCAATGGTGGTAGACACTGCAAAGTTCGCGGTCTCTGAACACAACGAGGAAGCCAAAACAAACCTCGTATTTGAAAGTGTGGTCGAGGGCAGATATCAAGTTAATGCAGGCATCTATTATGAACTTGCTGTCAAGGCCAAGAATGACTCTTCACCGGCCTCTACTGCAAATTATGTTACCGTTGTCTGGGACCACCATCCAGGCTTTGATTGTTGTGGTTGTGGTGAGGCTGCTGATTTTGAAGATCGAAGGTGTTTGTGGAAAGCTACTGACGAACGATGGGACATGGTGGTCCTGGTGGTTCGCCTGGACCTAGACTATCTGGTTTCTTTGATGGCTCCTGTAATGTTATAG

Protein Analysis

151

Amino Acids

16.91

Weight (kDa)

4.85

Isoelectric Point (pI)

30.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQAPI PF16845 29 - 99 7.2e-21 Aspartic acid proteinase inhibitor
Cystatin PF00031 29 - 97 7.7e-08 Cystatin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000425)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47550
fragaria_vesca FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 392
AccI GTMKAC 1 cut(s) 114
AccII CGCG 2 cut(s) 26, 131
AciI CCGC 1 cut(s) 131
AfiI CCNNNNNNNGG 2 cut(s) 109, 288
AgsI TTSAA 2 cut(s) 176, 344
AjnI CCWGG 3 cut(s) 301, 396, 408
AluBI AGCT 1 cut(s) 368
AluI AGCT 1 cut(s) 368
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 139
AoxI GGCC 2 cut(s) 237, 258
ApeKI GCWGC 1 cut(s) 332
AspLEI GCGC 1 cut(s) 9
AspS9I GGNCC 3 cut(s) 292, 394, 412
AsuHPI GGTGA 2 cut(s) 246, 338
AvaII GGWCC 3 cut(s) 292, 394, 412
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 319
BccI CCATC 3 cut(s) 306, 375, 430
BciT130I CCWGG 3 cut(s) 303, 398, 410
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 1 cut(s) 416
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
Bme1390I CCNGG 3 cut(s) 303, 398, 410
Bme18I GGWCC 3 cut(s) 292, 394, 412
BmgT120I GGNCC 3 cut(s) 292, 394, 412
BmiI GGNNCC 2 cut(s) 293, 441
BmrFI CCNGG 3 cut(s) 303, 398, 410
BmsI GCATC 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 139
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 288
Bse118I RCCGGY 1 cut(s) 256
BseBI CCWGG 3 cut(s) 303, 398, 410
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 2 cut(s) 109, 288
BseRI GAGGAG 1 cut(s) 11
BseXI GCAGC 1 cut(s) 319
Bsh1236I CGCG 2 cut(s) 26, 131
Bsh1285I CGRYCG 1 cut(s) 64
BshFI GGCC 2 cut(s) 239, 260
BsiEI CGRYCG 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 2 cut(s) 305, 398
BslI CCNNNNNNNGG 2 cut(s) 109, 288
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 2 cut(s) 305, 398
BsnI GGCC 2 cut(s) 239, 260
Bso31I GGTCTC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 2 cut(s) 61, 346
BspACI CCGC 1 cut(s) 131
BspANI GGCC 2 cut(s) 239, 260
BspFNI CGCG 2 cut(s) 26, 131
BspLI GGNNCC 2 cut(s) 293, 441
BspQI GCTCTTC 1 cut(s) 42
BspTNI GGTCTC 1 cut(s) 139
BsrFI RCCGGY 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 256
BssMI GATC 2 cut(s) 61, 346
Bst2UI CCWGG 3 cut(s) 303, 398, 410
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 2 cut(s) 42, 256
BstC8I GCNNGC 2 cut(s) 33, 211
BstF5I GGATG 1 cut(s) 298
BstFNI CGCG 2 cut(s) 26, 131
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 2 cut(s) 64, 349
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 2 cut(s) 61, 346
BstMCI CGRYCG 1 cut(s) 64
BstMWI GCNNNNNNNGC 4 cut(s) 32, 128, 236, 266
BstNI CCWGG 3 cut(s) 303, 398, 410
BstSCI CCNGG 3 cut(s) 301, 396, 408
BstUI CGCG 2 cut(s) 26, 131
BstV1I GCAGC 1 cut(s) 319
BsuRI GGCC 2 cut(s) 239, 260
BtsCI GGATG 1 cut(s) 298
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 33, 211
CfoI GCGC 1 cut(s) 9
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 3 cut(s) 292, 394, 412
CviAII CATG 2 cut(s) 14, 388
CviJI RGCY 8 cut(s) 82, 155, 239, 260, 306, 332, 368, 440
CviKI_1 RGCY 8 cut(s) 82, 155, 239, 260, 306, 332, 368, 440
DpnI GATC 2 cut(s) 63, 348
DpnII GATC 2 cut(s) 61, 346
DrdI GACNNNNNNGTC 1 cut(s) 392
DseDI GACNNNNNNGTC 1 cut(s) 392
Eam1104I CTCTTC 2 cut(s) 42, 256
EarI CTCTTC 2 cut(s) 42, 256
Eco31I GGTCTC 1 cut(s) 139
Eco32I GATATC 1 cut(s) 197
Eco47I GGWCC 3 cut(s) 292, 394, 412
EcoRII CCWGG 3 cut(s) 301, 396, 408
EcoRV GATATC 1 cut(s) 197
FaeI CATG 2 cut(s) 17, 391
FaiI YATR 6 cut(s) 15, 86, 222, 276, 389, 454
FaqI GGGAC 2 cut(s) 305, 398
FatI CATG 2 cut(s) 13, 387
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 333
FokI GGATG 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 333
FspBI CTAG 1 cut(s) 416
GlaI GCGC 1 cut(s) 8
GluI GCNGC 1 cut(s) 333
HaeIII GGCC 2 cut(s) 239, 260
HapII CCGG 1 cut(s) 257
HhaI GCGC 1 cut(s) 9
Hin1II CATG 2 cut(s) 17, 391
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HinfI GANTC 1 cut(s) 248
HpaII CCGG 1 cut(s) 257
HphI GGTGA 2 cut(s) 246, 338
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 139
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 345
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 3 cut(s) 122, 209, 269
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 128, 236, 266
Hsp92II CATG 2 cut(s) 17, 391
HspAI GCGC 1 cut(s) 7
Kzo9I GATC 2 cut(s) 61, 346
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 2 cut(s) 24, 445
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 1 cut(s) 222
MaeI CTAG 1 cut(s) 416
MaeIII GTNAC 1 cut(s) 277
MalI GATC 2 cut(s) 63, 348
MboI GATC 2 cut(s) 61, 346
MboII GAAGA 3 cut(s) 29, 243, 356
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 1 cut(s) 271
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 8 cut(s) 21, 32, 57, 142, 176, 181, 271, 322
MseI TTAA 1 cut(s) 204
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 3 cut(s) 303, 398, 410
MvaI CCWGG 3 cut(s) 303, 398, 410
MvnI CGCG 2 cut(s) 26, 131
MwoI GCNNNNNNNGC 4 cut(s) 32, 128, 236, 266
NdeII GATC 2 cut(s) 61, 346
NlaIII CATG 2 cut(s) 17, 391
NlaIV GGNNCC 2 cut(s) 293, 441
PciSI GCTCTTC 1 cut(s) 42
PkrI GCNGC 1 cut(s) 334
Ple19I CGATCG 1 cut(s) 64
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
Psp6I CCWGG 3 cut(s) 301, 396, 408
PspGI CCWGG 3 cut(s) 301, 396, 408
PspN4I GGNNCC 2 cut(s) 293, 441
PspPI GGNCC 3 cut(s) 292, 394, 412
PvuI CGATCG 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 2 cut(s) 61, 346
Sau96I GGNCC 3 cut(s) 292, 394, 412
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 3 cut(s) 303, 398, 410
SduI GDGCHC 1 cut(s) 21
SetI ASST 4 cut(s) 168, 356, 370, 417
SfaNI GCATC 1 cut(s) 222
SinI GGWCC 3 cut(s) 292, 394, 412
Sse9I AATT 1 cut(s) 271
SsiI CCGC 1 cut(s) 131
SspMI CTAG 1 cut(s) 416
StyD4I CCNGG 3 cut(s) 301, 396, 408
TaaI ACNGT 1 cut(s) 283
TaqI TCGA 2 cut(s) 186, 349
TasI AATT 1 cut(s) 271
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 124
TseI GCWGC 1 cut(s) 332
TspDTI ATGAA 1 cut(s) 237
TspRI CASTG 1 cut(s) 124
VpaK11BI GGWCC 3 cut(s) 292, 394, 412
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.