Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Forward (+)

4180773 .. 4181232

Gene Structure 460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G004990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCGTCTCCTCCTCCTCGCAATCATGGCCCTCCTCTTCTCTCTCTCTGCCGCCGCCCCAGACAGCCCTGTGCTCGGTGGTTGGAAGCCGATCAAGAACATTAACGACCCCCACGTGAAGGAGATCGCGGAGTTCGCAGTGTCGGAGTACAACAAGAAATCTAAGAACAAGTTGGTGTTCCAGAGCGTCGTCAAAGGTGAGACTCAGGTGGTCACAGGGGAAAACTTCCGGCTCGTCATTGTCGTCAAGGATAAATCCTCGGCTGTGAAATATGAGGCTGTTGTGTGGGAGAGGCTTTGGTTGAACAATATTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

105

Amino Acids

11.74

Weight (kDa)

9.48

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	26 - 97	1.2e-13	Cystatin domain
SQAPI	PF16845	31 - 102	1.2e-30	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	128
AciI	CCGC	3 cut(s)	51, 54, 128
AcvI	CACGTG	1 cut(s)	115
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	74, 118
AgsI	TTSAA	1 cut(s)	304
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	2 cut(s)	11, 194
AoxI	GGCC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	209
BbrPI	CACGTG	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	75
BcoDI	GTCTC	2 cut(s)	11, 194
BisI	GCNGC	2 cut(s)	51, 54
BlsI	GCNGC	2 cut(s)	52, 55
BmgT120I	GGNCC	1 cut(s)	28
BsaAI	YACGTR	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 118
BseDI	CCNNGG	1 cut(s)	258
BseLI	CCNNNNNNNGG	2 cut(s)	74, 118
BseMII	CTCAG	1 cut(s)	218
BseRI	GAGGAG	2 cut(s)	5, 23
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	229
BslI	CCNNNNNNNGG	2 cut(s)	74, 118
BsmAI	GTCTC	2 cut(s)	11, 194
BsmBI	CGTCTC	1 cut(s)	11
BsnI	GGCC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	90, 123
BspACI	CCGC	3 cut(s)	51, 54, 128
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	90, 123
Bst6I	CTCTTC	1 cut(s)	41
BstBAI	YACGTR	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	162, 204
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	2 cut(s)	93, 126
BstMAI	GTCTC	2 cut(s)	11, 194
BstMBI	GATC	2 cut(s)	90, 123
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 134
BstUI	CGCG	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	29
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	28
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	1 cut(s)	25
CviJI	RGCY	7 cut(s)	29, 66, 88, 232, 263, 278, 295
CviKI_1	RGCY	7 cut(s)	29, 66, 88, 232, 263, 278, 295
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	162, 204
DpnI	GATC	2 cut(s)	92, 125
DpnII	GATC	2 cut(s)	90, 123
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco72I	CACGTG	1 cut(s)	115
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	1 cut(s)	28
FaiI	YATR	2 cut(s)	26, 273
FatI	CATG	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	51, 54
Fsp4HI	GCNGC	2 cut(s)	51, 54
GluI	GCNGC	2 cut(s)	51, 54
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	229
HgaI	GACGC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	28
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	2 cut(s)	94, 181
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 134
HpyF3I	CTNAG	2 cut(s)	162, 204
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	90, 123
LpnPI	CCDG	6 cut(s)	72, 81, 191, 194, 201, 242
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	92, 125
MboI	GATC	2 cut(s)	90, 123
MboII	GAAGA	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	196
MmeI	TCCRAC	2 cut(s)	62, 123
MnlI	CCTC	8 cut(s)	20, 23, 26, 41, 44, 268, 268, 285
MseI	TTAA	1 cut(s)	102
MspI	CCGG	1 cut(s)	229
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	26, 134
NdeII	GATC	2 cut(s)	90, 123
NlaIII	CATG	1 cut(s)	28
NmeAIII	GCCGAG	1 cut(s)	239
NmuCI	GTSAC	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 240
PkrI	GCNGC	2 cut(s)	52, 55
PleI	GAGTC	1 cut(s)	196
PmaCI	CACGTG	1 cut(s)	115
PmlI	CACGTG	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	196
Ppu21I	YACGTR	1 cut(s)	115
PspCI	CACGTG	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	28
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	51, 54
Sau3AI	GATC	2 cut(s)	90, 123
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	3 cut(s)	117, 199, 210
SsiI	CCGC	3 cut(s)	51, 54, 128
SspI	AATATT	1 cut(s)	310
TaiI	ACGT	1 cut(s)	117
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	2 cut(s)	53, 56
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspRI	CASTG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.