Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Forward (+)

3271649 .. 3271987

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41982

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCGCCCTCATGTGCTCCTCGCGTTGCTTGCTCTTCTTGTTCCTCTTGTTGTTGCCGATCGTATTGTTGTTTGGAAGCCTATAAACAGCACTAGCGACCCAATGGTGGTAGACACTGCAAAGTTCGCGGTCTCTGAACACAACGAGGAAGCTAAAACAAACCTCGTATTTGAAAGTGTGGTCGAGGGCAGATATCAAGTTAATGCAGGCATCTATTATGAACTGGTTGTCAAAGCCAAGAATGACTCTTCACCGGCCTCTACTGCAAATTATGTTACCGTTGTCTGGGACCACCATCTAGGCGTCAGGCATTTGATAGACTTTTATAAAAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

112

Amino Acids

12.57

Weight (kDa)

6.18

Isoelectric Point (pI)

23.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	27 - 92	4.1e-08	Cystatin domain
SQAPI	PF16845	28 - 108	1.3e-22	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	111
AccII	CGCG	2 cut(s)	23, 128
AciI	CCGC	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	106, 285
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	136
AoxI	GGCC	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	243
AvaII	GGWCC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	18
BccI	CCATC	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	2 cut(s)	93, 299
Bme18I	GGWCC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	290
BmsI	GCATC	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 285
Bse118I	RCCGGY	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	106, 285
BseNI	ACTGG	1 cut(s)	228
BseRI	GAGGAG	1 cut(s)	8
Bsh1236I	CGCG	2 cut(s)	23, 128
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	257
BsiEI	CGRYCG	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	2 cut(s)	106, 285
BsmAI	GTCTC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	257
Bso31I	GGTCTC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	58
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	257
BspFNI	CGCG	2 cut(s)	23, 128
BspLI	GGNNCC	1 cut(s)	290
BspQI	GCTCTTC	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	228
BssAI	RCCGGY	1 cut(s)	253
BssMI	GATC	1 cut(s)	58
BssNI	GRCGYC	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	2 cut(s)	39, 253
BstACI	GRCGYC	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	30, 208
BstFNI	CGCG	2 cut(s)	23, 128
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	58
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 125, 263
BstUI	CGCG	2 cut(s)	23, 128
BsuRI	GGCC	1 cut(s)	257
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	2 cut(s)	30, 208
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	289
CseI	GACGC	1 cut(s)	292
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	4 cut(s)	79, 152, 236, 257
CviKI_1	RGCY	4 cut(s)	79, 152, 236, 257
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
Eam1104I	CTCTTC	2 cut(s)	39, 253
EarI	CTCTTC	2 cut(s)	39, 253
Eco31I	GGTCTC	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	194
FaeI	CATG	1 cut(s)	14
FaiI	YATR	5 cut(s)	12, 83, 219, 273, 327
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	111
FspBI	CTAG	2 cut(s)	93, 299
GlaI	GCGC	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	254
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	1 cut(s)	14
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	1 cut(s)	243
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	112
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	3 cut(s)	119, 206, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 125, 263
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	14
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	58
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	21
LpnPI	CCDG	5 cut(s)	192, 209, 267, 271, 292
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	2 cut(s)	93, 299
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	2 cut(s)	26, 240
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	1 cut(s)	268
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	7 cut(s)	18, 29, 54, 139, 173, 178, 268
MseI	TTAA	1 cut(s)	201
MspI	CCGG	1 cut(s)	254
MvnI	CGCG	2 cut(s)	23, 128
MwoI	GCNNNNNNNGC	3 cut(s)	29, 125, 263
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	1 cut(s)	14
NlaIV	GGNNCC	1 cut(s)	290
PciSI	GCTCTTC	1 cut(s)	39
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PsiI	TTATAA	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	290
PspPI	GGNCC	1 cut(s)	289
PvuI	CGATCG	1 cut(s)	61
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	201
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	1 cut(s)	289
SchI	GAGTC	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	2 cut(s)	154, 165
SfaNI	GCATC	1 cut(s)	219
SinI	GGWCC	1 cut(s)	289
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	1 cut(s)	128
SspMI	CTAG	2 cut(s)	93, 299
TaaI	ACNGT	1 cut(s)	280
TaqI	TCGA	1 cut(s)	183
TasI	AATT	1 cut(s)	268
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	234
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	2 cut(s)	93, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.