Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Reverse (-)

605274 .. 605612

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG009700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCGTCCATTCTTCTGCCTCTTCGCCGTCCTCCTCCCTCTGGCGGCCGCCGCACGCGTCAGACTGGCCGGCGGATGGAAGCCGATTAAGGACATCAATGACCCCCACGTGAAGGAGATCGCGGAGTTCGTGGTGTCGGAGTACAACAAGAAATCCGGGAAGAAGCTGGAGTTTCAGAGCGTGGTGAAGGGCGAGACTCAGGTTGTCGCCGGCGAGAACTACCAGCTCGTCACCGCCGTCAAGGATAACTCGGCGGCGGCCAAGTACGAGGGTGTTGTGTATGAGAAGATTTGGGAACATACTAGGGAATTGCTCTCCTTCGATCAAGTCAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

112

Amino Acids

12.63

Weight (kDa)

8.99

Isoelectric Point (pI)

15.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	24 - 96	1.4e-15	Cystatin domain
SQAPI	PF16845	29 - 110	5.6e-32	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	57, 122
AciI	CCGC	8 cut(s)	44, 48, 51, 72, 122, 234, 254, 257
AcoI	YGGCCR	3 cut(s)	45, 66, 258
AcvI	CACGTG	1 cut(s)	109
AfaI	GTAC	2 cut(s)	143, 266
AfiI	CCNNNNNNNGG	4 cut(s)	40, 43, 75, 112
AflIII	ACRYGT	1 cut(s)	55
AluBI	AGCT	2 cut(s)	166, 226
AluI	AGCT	2 cut(s)	166, 226
Alw26I	GTCTC	1 cut(s)	188
AoxI	GGCC	3 cut(s)	45, 66, 258
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	196, 223
BbrPI	CACGTG	1 cut(s)	109
BccI	CCATC	1 cut(s)	69
BceAI	ACGGC	2 cut(s)	11, 221
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	303
BisI	GCNGC	5 cut(s)	45, 48, 51, 255, 258
BlsI	GCNGC	5 cut(s)	46, 49, 52, 256, 259
Bme1390I	CCNGG	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	157
BpmI	CTGGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	157
BsaAI	YACGTR	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 43, 75, 112
Bse118I	RCCGGY	2 cut(s)	68, 209
Bse1I	ACTGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	4 cut(s)	40, 43, 75, 112
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	23
BseX3I	CGGCCG	1 cut(s)	45
Bsh1236I	CGCG	2 cut(s)	57, 122
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	3 cut(s)	47, 68, 260
BsiEI	CGRYCG	1 cut(s)	48
BsiSI	CCGG	3 cut(s)	69, 156, 210
BslI	CCNNNNNNNGG	4 cut(s)	40, 43, 75, 112
BsmAI	GTCTC	1 cut(s)	188
BsnI	GGCC	3 cut(s)	47, 68, 260
Bsp143I	GATC	2 cut(s)	117, 322
BspACI	CCGC	8 cut(s)	44, 48, 51, 72, 122, 234, 254, 257
BspANI	GGCC	3 cut(s)	47, 68, 260
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	2 cut(s)	57, 122
BsrFI	RCCGGY	2 cut(s)	68, 209
BsrI	ACTGG	1 cut(s)	69
BssAI	RCCGGY	2 cut(s)	68, 209
BssMI	GATC	2 cut(s)	117, 322
Bst6I	CTCTTC	1 cut(s)	26
BstBAI	YACGTR	1 cut(s)	109
BstC8I	GCNNGC	3 cut(s)	55, 70, 211
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	80
BstFNI	CGCG	2 cut(s)	57, 122
BstKTI	GATC	2 cut(s)	120, 325
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	2 cut(s)	117, 322
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	155
BstUI	CGCG	2 cut(s)	57, 122
BstZI	CGGCCG	1 cut(s)	45
BsuRI	GGCC	3 cut(s)	47, 68, 260
BtsCI	GGATG	1 cut(s)	80
Cac8I	GCNNGC	3 cut(s)	55, 70, 211
CciNI	GCGGCCGC	1 cut(s)	45
Cfr10I	RCCGGY	2 cut(s)	68, 209
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	142, 265
CviJI	RGCY	6 cut(s)	47, 68, 82, 166, 226, 260
CviKI_1	RGCY	6 cut(s)	47, 68, 82, 166, 226, 260
CviQI	GTAC	2 cut(s)	142, 265
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	2 cut(s)	119, 324
DpnII	GATC	2 cut(s)	117, 322
EaeI	YGGCCR	3 cut(s)	45, 66, 258
EagI	CGGCCG	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
EciI	GGCGGA	1 cut(s)	87
EclXI	CGGCCG	1 cut(s)	45
Eco52I	CGGCCG	1 cut(s)	45
Eco72I	CACGTG	1 cut(s)	109
FaiI	YATR	2 cut(s)	282, 300
Fnu4HI	GCNGC	5 cut(s)	45, 48, 51, 255, 258
FokI	GGATG	1 cut(s)	87
Fsp4HI	GCNGC	5 cut(s)	45, 48, 51, 255, 258
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	5 cut(s)	45, 48, 51, 255, 258
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	3 cut(s)	47, 68, 260
HapII	CCGG	3 cut(s)	69, 156, 210
HgaI	GACGC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	196
HpaII	CCGG	3 cut(s)	69, 156, 210
HphI	GGTGA	2 cut(s)	196, 223
Hpy188I	TCNGA	3 cut(s)	62, 139, 177
Hpy188III	TCNNGA	1 cut(s)	331
HpyAV	CCTTC	3 cut(s)	106, 181, 328
HpyCH4IV	ACGT	1 cut(s)	108
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	108
KroI	GCCGGC	2 cut(s)	68, 209
KroNI	GCCGGC	2 cut(s)	70, 211
Kzo9I	GATC	2 cut(s)	117, 322
LpnPI	CCDG	8 cut(s)	26, 50, 82, 152, 169, 185, 223, 236
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	2 cut(s)	119, 324
MboI	GATC	2 cut(s)	117, 322
MboII	GAAGA	4 cut(s)	4, 13, 172, 298
MluCI	AATT	1 cut(s)	308
MluI	ACGCGT	1 cut(s)	55
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	5 cut(s)	29, 41, 44, 48, 262
MreI	CGCCGGCG	1 cut(s)	209
MroNI	GCCGGC	2 cut(s)	68, 209
MseI	TTAA	1 cut(s)	87
MspI	CCGG	3 cut(s)	69, 156, 210
MspR9I	CCNGG	1 cut(s)	157
MvnI	CGCG	2 cut(s)	57, 122
MwoI	GCNNNNNNNGC	1 cut(s)	50
NaeI	GCCGGC	2 cut(s)	70, 211
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	2 cut(s)	117, 322
NgoMIV	GCCGGC	2 cut(s)	68, 209
NmeAIII	GCCGAG	1 cut(s)	230
NmuCI	GTSAC	1 cut(s)	229
NotI	GCGGCCGC	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 234
PdiI	GCCGGC	2 cut(s)	70, 211
PfoI	TCCNGGA	1 cut(s)	155
PkrI	GCNGC	5 cut(s)	46, 49, 52, 256, 259
PleI	GAGTC	1 cut(s)	190
PmaCI	CACGTG	1 cut(s)	109
PmlI	CACGTG	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	190
Ppu21I	YACGTR	1 cut(s)	109
PspCI	CACGTG	1 cut(s)	109
RsaI	GTAC	2 cut(s)	143, 266
RsaNI	GTAC	2 cut(s)	142, 265
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	5 cut(s)	45, 48, 51, 255, 258
Sau3AI	GATC	2 cut(s)	117, 322
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	157
SetI	ASST	4 cut(s)	111, 168, 204, 228
SgrAI	CRCCGGYG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	308
SsiI	CCGC	8 cut(s)	44, 48, 51, 72, 122, 234, 254, 257
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	155
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	321
TasI	AATT	1 cut(s)	308
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	5 cut(s)	47, 50, 53, 257, 260
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	229
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.