Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Reverse (-)

456807 .. 457136

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G009000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

GGAACTCCGATCGGCAGTTGGCAGCCCATAAAGAACATCAGCAACCCCAAGGTGAAAGAGGTGGCGAAGTTCGCGGTGTCCGAGTATAACAAGCAAGCCCAAGGCAAGAGCAGTGACCCAAAGTTGGTGCTTGATAGCGTGGTCCGTGGTGAGCTCCAGGTCATACACGGCCTCAAATATAAGCTTGTCCTTTCGGCCAAGAATGAGCCGTCGGTGTCTAACCCCACCTCCACGGCTACCTCCGATAAGTATGAGGCAGTTGTCTGGGACTTGTTTTGGCAGCATCTTAAGAAGTTGATCTCCTTTCAACTATTGTCAGAAGTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

110

Amino Acids

12.12

Weight (kDa)

9.37

Isoelectric Point (pI)

22.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	74
AciI	CCGC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	124
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	308
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	2 cut(s)	154, 184
AluI	AGCT	2 cut(s)	154, 184
Alw21I	GWGCWC	1 cut(s)	156
AoxI	GGCC	2 cut(s)	169, 195
ApeKI	GCWGC	2 cut(s)	22, 280
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	2 cut(s)	64, 161
AvaII	GGWCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	34, 292
BceAI	ACGGC	3 cut(s)	184, 193, 249
BciT130I	CCWGG	1 cut(s)	158
BfrI	CTTAAG	1 cut(s)	287
BisI	GCNGC	2 cut(s)	23, 281
BlsI	GCNGC	2 cut(s)	24, 282
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	292
BpmI	CTGGAG	1 cut(s)	140
BsaJI	CCNNGG	4 cut(s)	48, 100, 145, 231
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	4 cut(s)	48, 100, 145, 231
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseXI	GCAGC	2 cut(s)	34, 292
Bsh1236I	CGCG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	171, 197
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	171, 197
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	9, 297
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	2 cut(s)	171, 197
BspFNI	CGCG	1 cut(s)	74
BspTI	CTTAAG	1 cut(s)	287
BssECI	CCNNGG	4 cut(s)	48, 100, 145, 231
BssMI	GATC	2 cut(s)	9, 297
BssT1I	CCWWGG	2 cut(s)	48, 100
Bst2UI	CCWGG	1 cut(s)	158
BstAFI	CTTAAG	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	96
BstDSI	CCRYGG	2 cut(s)	145, 231
BstFNI	CGCG	1 cut(s)	74
BstKTI	GATC	2 cut(s)	12, 300
BstMBI	GATC	2 cut(s)	9, 297
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	2 cut(s)	34, 292
BsuRI	GGCC	2 cut(s)	171, 197
BtgI	CCRYGG	2 cut(s)	145, 231
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	142
CviJI	RGCY	8 cut(s)	25, 98, 154, 171, 184, 197, 208, 236
CviKI_1	RGCY	8 cut(s)	25, 98, 154, 171, 184, 197, 208, 236
DpnI	GATC	2 cut(s)	11, 299
DpnII	GATC	2 cut(s)	9, 297
EaeI	YGGCCR	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	48, 100
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	154
EcoICRI	GAGCTC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	2 cut(s)	48, 100
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	2 cut(s)	48, 100
FaiI	YATR	5 cut(s)	29, 87, 164, 180, 252
FaqI	GGGAC	1 cut(s)	281
Fnu4HI	GCNGC	2 cut(s)	23, 281
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	2 cut(s)	23, 281
GluI	GCNGC	2 cut(s)	23, 281
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	2 cut(s)	171, 197
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	182
HpaI	GTTAAC	1 cut(s)	325
HphI	GGTGA	2 cut(s)	64, 161
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	4 cut(s)	9, 82, 244, 319
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	1 cut(s)	214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
KspAI	GTTAAC	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	9, 297
LmnI	GCTCC	1 cut(s)	159
LpnPI	CCDG	3 cut(s)	143, 170, 250
Lsp1109I	GCAGC	2 cut(s)	34, 292
LweI	GCATC	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	2 cut(s)	11, 299
MboI	GATC	2 cut(s)	9, 297
MhlI	GDGCHC	1 cut(s)	156
MnlI	CCTC	5 cut(s)	52, 182, 238, 247, 250
MseI	TTAA	2 cut(s)	288, 324
MspCI	CTTAAG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeII	GATC	2 cut(s)	9, 297
NmuCI	GTSAC	1 cut(s)	113
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PkrI	GCNGC	2 cut(s)	24, 282
Ple19I	CGATCG	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	142
PvuI	CGATCG	1 cut(s)	12
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	288, 324
SatI	GCNGC	2 cut(s)	23, 281
Sau3AI	GATC	2 cut(s)	9, 297
Sau96I	GGNCC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	7 cut(s)	54, 63, 156, 162, 186, 230, 242
SfaNI	GCATC	1 cut(s)	292
SinI	GGWCC	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SsiI	CCGC	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	2 cut(s)	48, 100
Tru1I	TTAA	2 cut(s)	288, 324
Tru9I	TTAA	2 cut(s)	288, 324
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	2 cut(s)	22, 280
Tsp45I	GTSAC	1 cut(s)	113
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	118
Vha464I	CTTAAG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.