Prupe.6G335700_v2.0.a1

Belongs to the cystatin family. Phytocystatin subfamily

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
29179424 .. 29179783
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G335700.1

Sequence Viewer

Length: 360 bp
ATGTATCCTCATTGCTTCCTCACACTGACATTGATGATCACTCTACTCATTCCTCTTGCCACCGCCAGTGCCACAACAAACCGATATCCTGGTGCCTGGATGCCTGTAAACACCAGCGATCCAGTTGTGGTAGAAAAGGGAAAGTGGGCTGTTTTGGAGTACAACAAGAAAGTCACAAACAAGTTGGTTTTTCAAAGGGTGGTTTCAGGCGAGACCATATATATATCAGGCATCTTTTATGGGCTTGTCGTTGCGGCTACGAATGAGTCATTGCCTAACCCACCTGAAAATTACCATGCTGGTGTCTGGGCCAAATTTTTTGAACCCTTGAAATTAAGAACCTTTTACAAAGGGAACTGA

Protein Analysis

120

Amino Acids

13.37

Weight (kDa)

9.27

Isoelectric Point (pI)

26.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000425)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47550
fragaria_vesca FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AciI CCGC 2 cut(s) 63, 254
AclWI GGATC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 314
AfaI GTAC 1 cut(s) 161
AgsI TTSAA 3 cut(s) 194, 323, 331
AjnI CCWGG 2 cut(s) 88, 95
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 1 cut(s) 113
AoxI GGCC 1 cut(s) 309
ApoI RAATTY 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 309
BanI GGYRCC 1 cut(s) 92
BciT130I CCWGG 2 cut(s) 90, 97
BciVI GTATCC 1 cut(s) 15
BclI TGATCA 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 206
BfuI GTATCC 1 cut(s) 15
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 2 cut(s) 90, 97
BmgT120I GGNCC 1 cut(s) 309
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 2 cut(s) 90, 97
BmsI GCATC 2 cut(s) 90, 240
BsaI GGTCTC 1 cut(s) 206
Bse1I ACTGG 2 cut(s) 66, 122
Bse3DI GCAATG 2 cut(s) 10, 269
BseBI CCWGG 2 cut(s) 90, 97
BseGI GGATG 1 cut(s) 105
BseMI GCAATG 2 cut(s) 10, 269
BseNI ACTGG 2 cut(s) 66, 122
BshFI GGCC 1 cut(s) 311
BshNI GGYRCC 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 206
BsnI GGCC 1 cut(s) 311
Bso31I GGTCTC 1 cut(s) 206
Bsp143I GATC 2 cut(s) 36, 118
BspACI CCGC 2 cut(s) 63, 254
BspANI GGCC 1 cut(s) 311
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 1 cut(s) 113
BspT107I GGYRCC 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 206
BsrDI GCAATG 2 cut(s) 10, 269
BsrI ACTGG 2 cut(s) 66, 122
BssMI GATC 2 cut(s) 36, 118
Bst2UI CCWGG 2 cut(s) 90, 97
BstF5I GGATG 1 cut(s) 105
BstKTI GATC 2 cut(s) 39, 121
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 2 cut(s) 36, 118
BstNI CCWGG 2 cut(s) 90, 97
BstSCI CCNGG 2 cut(s) 88, 95
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 311
BtsCI GGATG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 23, 73
Cfr13I GGNCC 1 cut(s) 309
Csp6I GTAC 1 cut(s) 160
CviAII CATG 1 cut(s) 296
CviJI RGCY 4 cut(s) 149, 244, 257, 311
CviKI_1 RGCY 4 cut(s) 149, 244, 257, 311
CviQI GTAC 1 cut(s) 160
DpnI GATC 2 cut(s) 38, 120
DpnII GATC 2 cut(s) 36, 118
Eco31I GGTCTC 1 cut(s) 206
Eco32I GATATC 1 cut(s) 86
EcoRII CCWGG 2 cut(s) 88, 95
EcoRV GATATC 1 cut(s) 86
FaeI CATG 1 cut(s) 299
FaiI YATR 6 cut(s) 218, 220, 222, 224, 240, 297
FatI CATG 1 cut(s) 295
FbaI TGATCA 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 255
HaeIII GGCC 1 cut(s) 311
Hin1II CATG 1 cut(s) 299
HinfI GANTC 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 109
Hpy8I GTNNAC 1 cut(s) 109
Hsp92II CATG 1 cut(s) 299
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 2 cut(s) 36, 118
LweI GCATC 2 cut(s) 90, 240
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 38, 120
MboI GATC 2 cut(s) 36, 118
MluCI AATT 3 cut(s) 289, 314, 332
MlyI GAGTC 1 cut(s) 275
MnlI CCTC 3 cut(s) 18, 29, 63
MseI TTAA 1 cut(s) 335
MslI CAYNNNNRTG 1 cut(s) 300
MspR9I CCNGG 2 cut(s) 90, 97
MvaI CCWGG 2 cut(s) 90, 97
NdeII GATC 2 cut(s) 36, 118
NlaIII CATG 1 cut(s) 299
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 172
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Psp6I CCWGG 2 cut(s) 88, 95
PspGI CCWGG 2 cut(s) 88, 95
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 309
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 1 cut(s) 335
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 2 cut(s) 36, 118
Sau96I GGNCC 1 cut(s) 309
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 2 cut(s) 90, 97
SetI ASST 2 cut(s) 286, 344
SfaNI GCATC 2 cut(s) 90, 240
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 3 cut(s) 289, 314, 332
SsiI CCGC 2 cut(s) 63, 254
StyD4I CCNGG 2 cut(s) 88, 95
TasI AATT 3 cut(s) 289, 314, 332
TatI WGTACW 1 cut(s) 159
TauI GCSGC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 335
Tru9I TTAA 1 cut(s) 335
TscAI CASTG 2 cut(s) 30, 73
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
TspRI CASTG 2 cut(s) 30, 73
XapI RAATTY 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.