Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002150.1

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4068

Gene Structure 4068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002150.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 344 bp

aaagtgacgccagaatcccagagattcaattgagattttgtaatctttcccaacaaattgaagattgctttttcgtatccattgacttagtcttcacccttcaagaacatccaccttcctcgttcaaacaaatcaacgccaaaactttaacggtcacggtgcgtccactcttctgcctcctcgcaatcctctccatcctccaccctctagcggccgcagcacgtagtggactggccggtggatggaagttgattaaggacatcaacgacccacacgtgaaggagattgcggagttcgcagtgtcgaagtacaataagaaattcgggaagaagctggagttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

113

Amino Acids

12.7

Weight (kDa)

8.86

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	211, 215, 289
AcoI	YGGCCR	2 cut(s)	212, 233
AcsI	RAATTY	1 cut(s)	319
AcvI	CACGTG	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	8
AdeI	CACNNNGTG	1 cut(s)	226
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	2 cut(s)	210, 242
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	4 cut(s)	28, 61, 103, 126
AluBI	AGCT	1 cut(s)	333
AluI	AGCT	1 cut(s)	333
AoxI	GGCC	2 cut(s)	212, 233
ApeKI	GCWGC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	87
BbrPI	CACGTG	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	2 cut(s)	202, 236
BciVI	GTATCC	1 cut(s)	87
BfaI	CTAG	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	87
BisI	GCNGC	3 cut(s)	212, 215, 218
BlsI	GCNGC	3 cut(s)	213, 216, 219
BpiI	GAAGAC	1 cut(s)	84
BsaAI	YACGTR	2 cut(s)	223, 276
BsaHI	GRCGYC	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 242
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	236
BseGI	GGATG	3 cut(s)	108, 194, 247
BseLI	CCNNNNNNNGG	2 cut(s)	210, 242
BseNI	ACTGG	1 cut(s)	236
BseRI	GAGGAG	1 cut(s)	169
BseX3I	CGGCCG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	229
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	2 cut(s)	214, 235
BsiEI	CGRYCG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	210, 242
BsnI	GGCC	2 cut(s)	214, 235
BspACI	CCGC	3 cut(s)	211, 215, 289
BspANI	GGCC	2 cut(s)	214, 235
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	236
BssAI	RCCGGY	1 cut(s)	235
BssNI	GRCGYC	1 cut(s)	8
Bst4CI	ACNGT	2 cut(s)	153, 159
Bst6I	CTCTTC	1 cut(s)	175
BstACI	GRCGYC	1 cut(s)	8
BstBAI	YACGTR	2 cut(s)	223, 276
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	3 cut(s)	108, 194, 247
BstMCI	CGRYCG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 295
BstV1I	GCAGC	1 cut(s)	229
BstV2I	GAAGAC	1 cut(s)	84
BstZI	CGGCCG	1 cut(s)	212
BsuI	GTATCC	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	214, 235
BtsCI	GGATG	3 cut(s)	108, 194, 247
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	305
CciNI	GCGGCCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	235
CseI	GACGC	2 cut(s)	16, 151
Csp6I	GTAC	1 cut(s)	309
CviJI	RGCY	3 cut(s)	214, 235, 333
CviKI_1	RGCY	3 cut(s)	214, 235, 333
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	1 cut(s)	87
DraIII	CACNNNGTG	1 cut(s)	226
EaeI	YGGCCR	2 cut(s)	212, 233
EagI	CGGCCG	1 cut(s)	212
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
EclXI	CGGCCG	1 cut(s)	212
Eco52I	CGGCCG	1 cut(s)	212
Eco72I	CACGTG	1 cut(s)	276
Fnu4HI	GCNGC	3 cut(s)	212, 215, 218
FokI	GGATG	3 cut(s)	95, 181, 254
Fsp4HI	GCNGC	3 cut(s)	212, 215, 218
FspBI	CTAG	1 cut(s)	208
GluI	GCNGC	3 cut(s)	212, 215, 218
HaeIII	GGCC	2 cut(s)	214, 235
HapII	CCGG	1 cut(s)	236
HgaI	GACGC	2 cut(s)	16, 151
Hin1I	GRCGYC	1 cut(s)	8
HinfI	GANTC	2 cut(s)	14, 24
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	1 cut(s)	87
Hpy166II	GTNNAC	2 cut(s)	166, 229
Hpy188III	TCNNGA	2 cut(s)	103, 324
Hpy8I	GTNNAC	2 cut(s)	166, 229
HpyAV	CCTTC	3 cut(s)	109, 125, 273
HpyCH4III	ACNGT	2 cut(s)	153, 159
HpyCH4IV	ACGT	2 cut(s)	222, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 295
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	2 cut(s)	222, 275
Hsp92I	GRCGYC	1 cut(s)	8
LpnPI	CCDG	5 cut(s)	24, 32, 217, 249, 319
Lsp1109I	GCAGC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	208
MaeII	ACGT	2 cut(s)	222, 275
MaeIII	GTNAC	2 cut(s)	4, 153
MboII	GAAGA	4 cut(s)	73, 84, 162, 339
MfeI	CAATTG	1 cut(s)	28
MluCI	AATT	3 cut(s)	28, 56, 319
MnlI	CCTC	6 cut(s)	129, 187, 190, 199, 208, 215
MseI	TTAA	2 cut(s)	148, 254
MspI	CCGG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	28
MwoI	GCNNNNNNNGC	2 cut(s)	217, 295
NmuCI	GTSAC	2 cut(s)	4, 153
NotI	GCGGCCGC	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	14, 24
PflFI	GACNNNGTC	1 cut(s)	88
PkrI	GCNGC	3 cut(s)	213, 216, 219
PmaCI	CACGTG	1 cut(s)	276
PmlI	CACGTG	1 cut(s)	276
Ppu21I	YACGTR	2 cut(s)	223, 276
PspCI	CACGTG	1 cut(s)	276
PsyI	GACNNNGTC	1 cut(s)	88
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	148, 254
SatI	GCNGC	3 cut(s)	212, 215, 218
SetI	ASST	4 cut(s)	117, 225, 278, 335
Sse9I	AATT	3 cut(s)	28, 56, 319
SsiI	CCGC	3 cut(s)	211, 215, 289
SspMI	CTAG	1 cut(s)	208
TaaI	ACNGT	2 cut(s)	153, 159
TaiI	ACGT	2 cut(s)	225, 278
TaqI	TCGA	1 cut(s)	304
TasI	AATT	3 cut(s)	28, 56, 319
TatI	WGTACW	1 cut(s)	308
TauI	GCSGC	2 cut(s)	214, 217
TfiI	GAWTC	2 cut(s)	14, 24
Tru1I	TTAA	2 cut(s)	148, 254
Tru9I	TTAA	2 cut(s)	148, 254
TscAI	CASTG	1 cut(s)	305
TseFI	GTSAC	2 cut(s)	4, 153
TseI	GCWGC	1 cut(s)	217
Tsp45I	GTSAC	2 cut(s)	4, 153
TspRI	CASTG	1 cut(s)	305
Tth111I	GACNNNGTC	1 cut(s)	88
XapI	RAATTY	1 cut(s)	319
XspI	CTAG	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.