Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Forward (+)

43373882 .. 43374076

Gene Structure 195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG227300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGCATCCATTCTTCTGCCTCCTTGCAATCCTCTCCATCCTCCACCCTCTAGCGGCCGCAGCACGTAATGGAATGGCCGGTGGATGGAAGTTGATTAAGGACATCAACGACCCACAAGTGAAGGAGATCGCAGAGTTTGCAGTGTCAAAGTACAATAAGAAATTCGGGAAGAAGCTGGAGTTTCAGAGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

64

Amino Acids

7.15

Weight (kDa)

9.52

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	32 - 64	4.4e-08	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	53, 57
AcoI	YGGCCR	2 cut(s)	54, 75
AcsI	RAATTY	1 cut(s)	161
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	52, 84
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
AoxI	GGCC	2 cut(s)	54, 75
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	2 cut(s)	44, 78
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	3 cut(s)	54, 57, 60
BlsI	GCNGC	3 cut(s)	55, 58, 61
BmsI	GCATC	1 cut(s)	13
BsaAI	YACGTR	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 84
Bse118I	RCCGGY	1 cut(s)	77
BseGI	GGATG	3 cut(s)	4, 36, 89
BseLI	CCNNNNNNNGG	2 cut(s)	52, 84
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	71
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	56, 77
BsiEI	CGRYCG	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	52, 84
BsnI	GGCC	2 cut(s)	56, 77
Bsp143I	GATC	1 cut(s)	126
BspACI	CCGC	2 cut(s)	53, 57
BspANI	GGCC	2 cut(s)	56, 77
BsrFI	RCCGGY	1 cut(s)	77
BssAI	RCCGGY	1 cut(s)	77
BssMI	GATC	1 cut(s)	126
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstBAI	YACGTR	1 cut(s)	65
BstF5I	GGATG	3 cut(s)	4, 36, 89
BstKTI	GATC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	126
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 137
BstV1I	GCAGC	1 cut(s)	71
BstZI	CGGCCG	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	56, 77
BtsCI	GGATG	3 cut(s)	4, 36, 89
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	147
CciNI	GCGGCCGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	151
CviJI	RGCY	3 cut(s)	56, 77, 175
CviKI_1	RGCY	3 cut(s)	56, 77, 175
CviQI	GTAC	1 cut(s)	151
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
EaeI	YGGCCR	2 cut(s)	54, 75
EagI	CGGCCG	1 cut(s)	54
EclXI	CGGCCG	1 cut(s)	54
Eco52I	CGGCCG	1 cut(s)	54
EcoT22I	ATGCAT	1 cut(s)	6
Fnu4HI	GCNGC	3 cut(s)	54, 57, 60
FokI	GGATG	2 cut(s)	23, 96
Fsp4HI	GCNGC	3 cut(s)	54, 57, 60
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	3 cut(s)	54, 57, 60
HaeIII	GGCC	2 cut(s)	56, 77
HapII	CCGG	1 cut(s)	78
HpaII	CCGG	1 cut(s)	78
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	3 cut(s)	4, 26, 140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 137
HpySE526I	ACGT	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	126
LpnPI	CCDG	2 cut(s)	91, 161
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	1 cut(s)	64
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	2 cut(s)	4, 181
MluCI	AATT	1 cut(s)	161
MnlI	CCTC	4 cut(s)	29, 41, 50, 57
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	96
MspI	CCGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	59, 137
NdeII	GATC	1 cut(s)	126
NotI	GCGGCCGC	1 cut(s)	54
NsiI	ATGCAT	1 cut(s)	6
PkrI	GCNGC	3 cut(s)	55, 58, 61
Ppu21I	YACGTR	1 cut(s)	65
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	3 cut(s)	54, 57, 60
Sau3AI	GATC	1 cut(s)	126
SetI	ASST	2 cut(s)	67, 177
SfaNI	GCATC	1 cut(s)	13
SgeI	CNNG	7 cut(s)	35, 62, 75, 90, 128, 178, 188
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	2 cut(s)	53, 57
SspMI	CTAG	1 cut(s)	50
TaiI	ACGT	1 cut(s)	67
TasI	AATT	1 cut(s)	161
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	2 cut(s)	56, 59
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	1 cut(s)	59
TspRI	CASTG	1 cut(s)	147
XapI	RAATTY	1 cut(s)	161
XspI	CTAG	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.