pycom04g19190

Belongs to the cystatin family. Phytocystatin subfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
20947878 .. 20948225
348 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g19190.1

Sequence Viewer

Length: 348 bp
ATGCGTCCTCACTACCTTGTCGCATTCTTTGTTCTACTCGTTCCCCTTGTCAGCGCTGCGAAAGCCTCTTGGAAACCCGTAAACATCAGCGACCCGTCGGTGGTAGAACTCGGAAGGTGGAGTGTTTCTGAGTTCAACAAGGATGTCAGAAAACAGTTGGTTTTTGAGAAATTGGTTTCGGGTGGCTCCGCCGTATTCAAAGTAGGCAAATTGTATGCGCTTCTTTTTGCGGCGAGGAATGAATCGTTGGCTGATTCCGGCGACAACTACTTGGCTGGTGCCTGGGTGCAGTGGTCGGGAAAAAAGAAATTGATTGCCTTTTACAAGCACAAAGGTCGCAAGAACTGA

Protein Analysis

116

Amino Acids

12.84

Weight (kDa)

10.05

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQAPI PF16845 28 - 108 1.6e-12 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000425)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47550
fragaria_vesca FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 278
AciI CCGC 2 cut(s) 189, 230
AfeI AGCGCT 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 2 cut(s) 136, 199
AjnI CCWGG 1 cut(s) 281
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
Aor51HI AGCGCT 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 56
AspLEI GCGC 2 cut(s) 56, 220
BanI GGYRCC 1 cut(s) 278
BbvI GCAGC 1 cut(s) 43
BceAI ACGGC 1 cut(s) 176
BcgI CGANNNNNNTGC 1 cut(s) 317
BciT130I CCWGG 1 cut(s) 283
BfoI RGCGCY 1 cut(s) 57
BisI GCNGC 2 cut(s) 57, 231
BlsI GCNGC 2 cut(s) 58, 232
Bme1390I CCNGG 1 cut(s) 283
BmiI GGNNCC 2 cut(s) 187, 280
BmrFI CCNGG 1 cut(s) 283
BsaJI CCNNGG 1 cut(s) 282
Bsc4I CCNNNNNNNGG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 43
BsgI GTGCAG 1 cut(s) 308
BshNI GGYRCC 1 cut(s) 278
BsiSI CCGG 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 100
BsmI GAATGC 1 cut(s) 23
BspACI CCGC 2 cut(s) 189, 230
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 187, 280
BspT107I GGYRCC 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 148
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 2 cut(s) 56, 220
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 281
BstV1I GCAGC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 148
BtsI GCAGTG 1 cut(s) 296
BtsIMutI CAGTG 1 cut(s) 296
CfoI GCGC 2 cut(s) 56, 220
CviJI RGCY 4 cut(s) 65, 186, 251, 275
CviKI_1 RGCY 4 cut(s) 65, 186, 251, 275
DdeI CTNAG 1 cut(s) 129
EciI GGCGGA 1 cut(s) 178
Eco47III AGCGCT 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 281
FaiI YATR 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 57, 231
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 57, 231
GlaI GCGC 2 cut(s) 55, 219
GluI GCNGC 2 cut(s) 57, 231
HaeII RGCGCY 1 cut(s) 57
HapII CCGG 1 cut(s) 258
HhaI GCGC 2 cut(s) 56, 220
Hin6I GCGC 2 cut(s) 54, 218
HinP1I GCGC 2 cut(s) 54, 218
HinfI GANTC 2 cut(s) 242, 254
HpaII CCGG 1 cut(s) 258
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 113, 130, 149
Hpy188III TCNNGA 1 cut(s) 297
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4V TGCA 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 129
HspAI GCGC 2 cut(s) 54, 218
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 4 cut(s) 261, 268, 271, 295
Lsp1109I GCAGC 1 cut(s) 43
MluCI AATT 3 cut(s) 170, 209, 308
MnlI CCTC 3 cut(s) 18, 76, 228
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 283
Mva1269I GAATGC 1 cut(s) 23
MvaI CCWGG 1 cut(s) 283
MwoI GCNNNNNNNGC 1 cut(s) 62
NlaIV GGNNCC 2 cut(s) 187, 280
PctI GAATGC 1 cut(s) 23
PfeI GAWTC 2 cut(s) 242, 254
PkrI GCNGC 2 cut(s) 58, 232
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 2 cut(s) 187, 280
SatI GCNGC 2 cut(s) 57, 231
ScrFI CCNGG 1 cut(s) 283
SetI ASST 3 cut(s) 18, 119, 337
Sse9I AATT 3 cut(s) 170, 209, 308
SsiI CCGC 2 cut(s) 189, 230
StyD4I CCNGG 1 cut(s) 281
TaaI ACNGT 1 cut(s) 156
TasI AATT 3 cut(s) 170, 209, 308
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 2 cut(s) 242, 254
TscAI CASTG 1 cut(s) 296
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 255
TspRI CASTG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.