Rh5AG080900

Belongs to the cystatin family. Phytocystatin subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
6906570 .. 6938562
31993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG080900.1

Sequence Viewer

Length: 492 bp
ATGATGCGTACTCAGTGCCTCTTCCTTGCACTTCTTGCTCTCCTCCTTCCTCTGGTCATAGCTGCCGGAGATCCATCTGAAGACCAAATTGCAGGTGGTTGGGAACCCATCAAGAATATCGGTGACCCGCATGTGCAAGATATAGCAAAGTGGGCGGTCACCGAGTACAACCAGCAATCCCACAAGGCGTTATTTTTCCTGAGGGTGGTTCAAGGCCAGGAACAAGTCGTAGCTGGAACAAATTATAAGCTTGTCATTAGTGTCAAGGATGGATCCTCTACTGTGAATTATGAGGGCTTCGTCTTTGAGAACTTACAAGAGACATCTAGAAAATTGAAAGCAAAACCCCATAATCGCAGCTGGGCAGCAGAACTAACTTCATCGGCATTTTACCCCTATGTTCCTAAACTTGATGAAGACCTCGACAAGCTGAATCCCCACTATTCTTCTAGATTCTCTACACAATTGTCATTACTTGGGCGGTTTTTATGA

Protein Analysis

163

Amino Acids

18.33

Weight (kDa)

6.41

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cystatin PF00031 32 - 104 1.2e-13 Cystatin domain
SQAPI PF16845 37 - 113 1.8e-26 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000425)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47550
fragaria_vesca FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
AarI CACCTGC 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 83
AciI CCGC 3 cut(s) 128, 155, 481
AclWI GGATC 3 cut(s) 65, 267, 280
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 2 cut(s) 10, 167
AfiI CCNNNNNNNGG 2 cut(s) 52, 205
AgsI TTSAA 2 cut(s) 212, 337
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 5 cut(s) 62, 233, 250, 360, 430
AluI AGCT 5 cut(s) 62, 233, 250, 360, 430
Alw26I GTCTC 1 cut(s) 314
AlwI GGATC 3 cut(s) 65, 267, 280
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 3 cut(s) 62, 357, 365
AsuHPI GGTGA 2 cut(s) 134, 151
AxyI CCTNAGG 1 cut(s) 200
BamHI GGATCC 1 cut(s) 272
BbsI GAAGAC 2 cut(s) 87, 423
BbvI GCAGC 3 cut(s) 49, 369, 377
BccI CCATC 3 cut(s) 82, 116, 263
BciT130I CCWGG 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 2 cut(s) 327, 450
BfuAI ACCTGC 1 cut(s) 83
BisI GCNGC 3 cut(s) 63, 358, 366
BlsI GCNGC 3 cut(s) 64, 359, 367
Bme1390I CCNGG 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 105, 274
BmrFI CCNGG 1 cut(s) 218
BpiI GAAGAC 2 cut(s) 87, 423
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 205
Bse21I CCTNAGG 1 cut(s) 200
BseBI CCWGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 2 cut(s) 52, 205
BseMII CTCAG 2 cut(s) 26, 191
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 3 cut(s) 49, 369, 377
BseYI CCCAGC 1 cut(s) 360
BshFI GGCC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 66
BslI CCNNNNNNNGG 2 cut(s) 52, 205
BsmAI GTCTC 1 cut(s) 314
BsnI GGCC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 70, 272
BspACI CCGC 3 cut(s) 128, 155, 481
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 2 cut(s) 25, 192
BspLI GGNNCC 2 cut(s) 105, 274
BspMI ACCTGC 1 cut(s) 83
BspPI GGATC 3 cut(s) 65, 267, 280
BssMI GATC 2 cut(s) 70, 272
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 26
BstAPI GCANNNNNTGC 1 cut(s) 35
BstDEI CTNAG 2 cut(s) 12, 200
BstEII GGTNACC 2 cut(s) 122, 157
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 2 cut(s) 73, 275
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 2 cut(s) 70, 272
BstMWI GCNNNNNNNGC 2 cut(s) 35, 152
BstNI CCWGG 1 cut(s) 218
BstNSI RCATGY 1 cut(s) 134
BstPI GGTNACC 2 cut(s) 122, 157
BstSCI CCNGG 1 cut(s) 216
BstV1I GCAGC 3 cut(s) 49, 369, 377
BstV2I GAAGAC 2 cut(s) 87, 423
BstX2I RGATCY 2 cut(s) 70, 272
BstYI RGATCY 2 cut(s) 70, 272
Bsu36I CCTNAGG 1 cut(s) 200
BsuRI GGCC 1 cut(s) 216
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 20
BveI ACCTGC 1 cut(s) 83
Csp6I GTAC 2 cut(s) 9, 166
CviAII CATG 1 cut(s) 131
CviJI RGCY 7 cut(s) 62, 216, 233, 250, 297, 360, 430
CviKI_1 RGCY 7 cut(s) 62, 216, 233, 250, 297, 360, 430
CviQI GTAC 2 cut(s) 9, 166
DdeI CTNAG 2 cut(s) 12, 200
DpnI GATC 2 cut(s) 72, 274
DpnII GATC 2 cut(s) 70, 272
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 99
Eco81I CCTNAGG 1 cut(s) 200
Eco91I GGTNACC 2 cut(s) 122, 157
EcoO65I GGTNACC 2 cut(s) 122, 157
EcoRII CCWGG 1 cut(s) 216
FaeI CATG 1 cut(s) 134
FaiI YATR 8 cut(s) 59, 132, 143, 246, 291, 351, 399, 490
FatI CATG 1 cut(s) 130
FauI CCCGC 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 63, 358, 366
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 3 cut(s) 63, 358, 366
FspBI CTAG 2 cut(s) 327, 450
GluI GCNGC 3 cut(s) 63, 358, 366
GsaI CCCAGC 1 cut(s) 364
HaeIII GGCC 1 cut(s) 216
HapII CCGG 1 cut(s) 66
Hin1II CATG 1 cut(s) 134
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 2 cut(s) 433, 453
HpaII CCGG 1 cut(s) 66
HphI GGTGA 2 cut(s) 134, 151
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 4 cut(s) 112, 199, 327, 450
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 3 cut(s) 29, 92, 136
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 152
HpyF3I CTNAG 2 cut(s) 12, 200
Hsp92II CATG 1 cut(s) 134
Kzo9I GATC 2 cut(s) 70, 272
LpnPI CCDG 9 cut(s) 38, 78, 79, 185, 203, 212, 219, 230, 346
Lsp1109I GCAGC 3 cut(s) 49, 369, 377
MaeI CTAG 2 cut(s) 327, 450
MaeIII GTNAC 2 cut(s) 122, 157
MalI GATC 2 cut(s) 72, 274
MboI GATC 2 cut(s) 70, 272
MboII GAAGA 4 cut(s) 13, 92, 428, 438
MfeI CAATTG 1 cut(s) 464
MflI RGATCY 2 cut(s) 70, 272
MluCI AATT 5 cut(s) 87, 241, 286, 332, 464
MnlI CCTC 7 cut(s) 29, 53, 60, 195, 286, 286, 431
MspA1I CMGCKG 1 cut(s) 360
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 218
MunI CAATTG 1 cut(s) 464
MvaI CCWGG 1 cut(s) 218
MwoI GCNNNNNNNGC 2 cut(s) 35, 152
NdeII GATC 2 cut(s) 70, 272
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 2 cut(s) 105, 274
NmuCI GTSAC 2 cut(s) 122, 157
NspI RCATGY 1 cut(s) 134
PaqCI CACCTGC 1 cut(s) 83
PfeI GAWTC 2 cut(s) 433, 453
PkrI GCNGC 3 cut(s) 64, 359, 367
PsiI TTATAA 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 216
PspEI GGTNACC 2 cut(s) 122, 157
PspFI CCCAGC 1 cut(s) 360
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 2 cut(s) 105, 274
PsuI RGATCY 2 cut(s) 70, 272
PvuII CAGCTG 1 cut(s) 360
RsaI GTAC 2 cut(s) 10, 167
RsaNI GTAC 2 cut(s) 9, 166
SatI GCNGC 3 cut(s) 63, 358, 366
Sau3AI GATC 2 cut(s) 70, 272
ScrFI CCNGG 1 cut(s) 218
SetI ASST 7 cut(s) 64, 97, 235, 252, 362, 423, 432
Sse9I AATT 5 cut(s) 87, 241, 286, 332, 464
SsiI CCGC 3 cut(s) 128, 155, 481
SspMI CTAG 2 cut(s) 327, 450
StyD4I CCNGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 283
TaqI TCGA 1 cut(s) 423
TasI AATT 5 cut(s) 87, 241, 286, 332, 464
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 2 cut(s) 433, 453
TscAI CASTG 1 cut(s) 20
TseFI GTSAC 2 cut(s) 122, 157
TseI GCWGC 3 cut(s) 62, 357, 365
Tsp45I GTSAC 2 cut(s) 122, 157
TspDTI ATGAA 2 cut(s) 369, 429
TspRI CASTG 1 cut(s) 20
XbaI TCTAGA 2 cut(s) 326, 449
XceI RCATGY 1 cut(s) 134
XcmI CCANNNNNNNNNTGG 1 cut(s) 92
XspI CTAG 2 cut(s) 327, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.