Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Forward (+)

96052353 .. 96052700

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00075240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCGTCCATTCTTCTGCCTCCTCGCAATCCTCGCCGTCCTCCTCCCTCTGGCGGCCGCCGCACGCAGTGGGCTGGCCGGCGGATGGAAGCCCATTAAGGACATCAACGACCCCCATGTGAAGGAGATTGCGGAGTTCGCGGTGTCGGAGTACAACAAGAAATCCGGGAAGAAGCTGGAGTTTCAGAGCGTGGTGAAGGGCGAGACTCAGGTCGTCGCCGGCGAGAACTACCGGCTCGTTATCGCCGTCAAGGATAACTCGGCGGCGGCCAAGTACGAGGGCGTCGTGTATGAGAAGATTTGGGAGCATACTAGGGAATTGCTCTCCTTCGATCAAGTCAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

115

Amino Acids

12.79

Weight (kDa)

8.99

Isoelectric Point (pI)

20.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	27 - 99	2.3e-16	Cystatin domain
SQAPI	PF16845	32 - 113	1.1e-34	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	140
AciI	CCGC	8 cut(s)	53, 57, 60, 81, 131, 140, 263, 266
AcoI	YGGCCR	3 cut(s)	54, 75, 267
AcyI	GRCGYC	1 cut(s)	282
AdeI	CACNNNGTG	1 cut(s)	68
AfaI	GTAC	2 cut(s)	152, 275
AfiI	CCNNNNNNNGG	4 cut(s)	49, 52, 84, 121
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	197
AoxI	GGCC	3 cut(s)	54, 75, 267
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	205
BccI	CCATC	1 cut(s)	78
BceAI	ACGGC	2 cut(s)	20, 230
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	312
BisI	GCNGC	5 cut(s)	54, 57, 60, 264, 267
BlsI	GCNGC	5 cut(s)	55, 58, 61, 265, 268
Bme1390I	CCNGG	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	166
BoxI	GACNNNNGTC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 52, 84, 121
Bse118I	RCCGGY	3 cut(s)	77, 218, 231
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	4 cut(s)	49, 52, 84, 121
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	2 cut(s)	11, 32
BseX3I	CGGCCG	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	3 cut(s)	56, 77, 269
BsiEI	CGRYCG	1 cut(s)	57
BsiSI	CCGG	4 cut(s)	78, 165, 219, 232
BslI	CCNNNNNNNGG	4 cut(s)	49, 52, 84, 121
BsmAI	GTCTC	1 cut(s)	197
BsnI	GGCC	3 cut(s)	56, 77, 269
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	8 cut(s)	53, 57, 60, 81, 131, 140, 263, 266
BspANI	GGCC	3 cut(s)	56, 77, 269
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	140
BsrFI	RCCGGY	3 cut(s)	77, 218, 231
BssAI	RCCGGY	3 cut(s)	77, 218, 231
BssMI	GATC	1 cut(s)	331
BssNI	GRCGYC	1 cut(s)	282
BstACI	GRCGYC	1 cut(s)	282
BstC8I	GCNNGC	4 cut(s)	64, 75, 79, 220
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	89
BstFNI	CGCG	1 cut(s)	140
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	331
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 59, 137
BstPAI	GACNNNNGTC	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	164
BstUI	CGCG	1 cut(s)	140
BstZI	CGGCCG	1 cut(s)	54
BsuRI	GGCC	3 cut(s)	56, 77, 269
BtsCI	GGATG	1 cut(s)	89
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	4 cut(s)	64, 75, 79, 220
CciNI	GCGGCCGC	1 cut(s)	54
Cfr10I	RCCGGY	3 cut(s)	77, 218, 231
CseI	GACGC	1 cut(s)	271
Csp6I	GTAC	2 cut(s)	151, 274
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	7 cut(s)	56, 73, 77, 91, 175, 235, 269
CviKI_1	RGCY	7 cut(s)	56, 73, 77, 91, 175, 235, 269
CviQI	GTAC	2 cut(s)	151, 274
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
DraIII	CACNNNGTG	1 cut(s)	68
EaeI	YGGCCR	3 cut(s)	54, 75, 267
EagI	CGGCCG	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	96
EclXI	CGGCCG	1 cut(s)	54
Eco52I	CGGCCG	1 cut(s)	54
FaeI	CATG	1 cut(s)	119
FaiI	YATR	3 cut(s)	117, 291, 309
FatI	CATG	1 cut(s)	115
Fnu4HI	GCNGC	5 cut(s)	54, 57, 60, 264, 267
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	5 cut(s)	54, 57, 60, 264, 267
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	5 cut(s)	54, 57, 60, 264, 267
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	3 cut(s)	56, 77, 269
HapII	CCGG	4 cut(s)	78, 165, 219, 232
HgaI	GACGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	1 cut(s)	119
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	4 cut(s)	78, 165, 219, 232
HphI	GGTGA	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	148, 186
Hpy188III	TCNNGA	1 cut(s)	340
Hpy99I	CGWCG	2 cut(s)	218, 287
HpyAV	CCTTC	3 cut(s)	115, 190, 337
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 59, 137
HpyF3I	CTNAG	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	119
KroI	GCCGGC	2 cut(s)	77, 218
KroNI	GCCGGC	2 cut(s)	79, 220
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	8 cut(s)	35, 59, 91, 161, 178, 194, 232, 245
MaeI	CTAG	1 cut(s)	312
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	3 cut(s)	4, 181, 307
MluCI	AATT	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	7 cut(s)	29, 32, 41, 50, 53, 57, 271
MreI	CGCCGGCG	1 cut(s)	218
MroNI	GCCGGC	2 cut(s)	77, 218
MseI	TTAA	1 cut(s)	96
MspI	CCGG	4 cut(s)	78, 165, 219, 232
MspR9I	CCNGG	1 cut(s)	166
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	3 cut(s)	32, 59, 137
NaeI	GCCGGC	2 cut(s)	79, 220
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	1 cut(s)	331
NgoMIV	GCCGGC	2 cut(s)	77, 218
NlaIII	CATG	1 cut(s)	119
NmeAIII	GCCGAG	1 cut(s)	239
NotI	GCGGCCGC	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	3 cut(s)	219, 243, 282
PdiI	GCCGGC	2 cut(s)	79, 220
PfoI	TCCNGGA	1 cut(s)	164
PkrI	GCNGC	5 cut(s)	55, 58, 61, 265, 268
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PshAI	GACNNNNGTC	1 cut(s)	209
RsaI	GTAC	2 cut(s)	152, 275
RsaNI	GTAC	2 cut(s)	151, 274
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	5 cut(s)	54, 57, 60, 264, 267
Sau3AI	GATC	1 cut(s)	331
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	166
SetI	ASST	2 cut(s)	177, 213
SgrAI	CRCCGGYG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	317
SsiI	CCGC	8 cut(s)	53, 57, 60, 81, 131, 140, 263, 266
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	164
TaqI	TCGA	1 cut(s)	330
TasI	AATT	1 cut(s)	317
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	5 cut(s)	56, 59, 62, 266, 269
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	73
TspRI	CASTG	1 cut(s)	73
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.