AT5G47550

Belongs to the cystatin family. Phytocystatin subfamily

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
19286314 .. 19287179
866 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47550.1

Sequence Viewer

Length: 369 bp
ATGACTAGTAAGGTCGTCTTCCTTCTTCTCCTCTCTCTCGTCGTCGTCCTCCTCCCTCTCTACGCCTCTGCGGCTGCCCGCGTCGGTGGTTGGAGTCCCATCAGCAACGTTACGGACCCTCAAGTCGTAGAGATCGGTGAATTCGCGGTCTCCGAGTACAACAAACGGAGCGAATCGGGACTCAAGTTCGAGACGGTTGTTAGCGGCGAGACTCAGGTCGTATCTGGTACAAATTACCGTCTTAAGGTGGCGGCTAATGACGGCGACGGAGTGAGCAAGAACTACTTGGCAATCGTATGGGACAAGCCGTGGATGAAATTCAGAAATCTCACTTCCTTCGAGCCTGCCAATAATGGTCGCTTCCTTTAA

Protein Analysis

122

Amino Acids

13.37

Weight (kDa)

7.96

Isoelectric Point (pI)

26.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cystatin PF00031 29 - 113 2.8e-15 Cystatin domain
SQAPI PF16845 34 - 115 2.1e-37 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000425)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47550
fragaria_vesca FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AccII CGCG 2 cut(s) 81, 146
AciI CCGC 5 cut(s) 71, 79, 146, 204, 251
AclI AACGTT 1 cut(s) 108
AcsI RAATTY 2 cut(s) 140, 317
AfaI GTAC 2 cut(s) 158, 229
AfiI CCNNNNNNNGG 1 cut(s) 244
AflII CTTAAG 1 cut(s) 242
AhlI ACTAGT 1 cut(s) 5
Alw26I GTCTC 3 cut(s) 154, 185, 203
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 2 cut(s) 140, 317
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 149
AvaII GGWCC 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 107
BceAI ACGGC 2 cut(s) 277, 292
BcoDI GTCTC 3 cut(s) 154, 185, 203
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 1 cut(s) 6
BfrI CTTAAG 1 cut(s) 242
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 4 cut(s) 72, 75, 205, 252
BlsI GCNGC 4 cut(s) 73, 76, 206, 253
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 117
BoxI GACNNNNGTC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 10
BpuEI CTTGAG 2 cut(s) 105, 167
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 308
BseGI GGATG 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 227
BseRI GAGGAG 2 cut(s) 20, 41
BseXI GCAGC 1 cut(s) 61
Bsh1236I CGCG 2 cut(s) 81, 146
BslFI GGGAC 3 cut(s) 81, 192, 314
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 3 cut(s) 154, 185, 203
BsmBI CGTCTC 1 cut(s) 185
BsmFI GGGAC 3 cut(s) 81, 192, 314
Bso31I GGTCTC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 132
BspACI CCGC 5 cut(s) 71, 79, 146, 204, 251
BspCNI CTCAG 1 cut(s) 226
BspFNI CGCG 2 cut(s) 81, 146
BspLI GGNNCC 1 cut(s) 117
BspTI CTTAAG 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 196, 239
BstAFI CTTAAG 1 cut(s) 242
BstC8I GCNNGC 2 cut(s) 79, 345
BstDEI CTNAG 1 cut(s) 213
BstDSI CCRYGG 1 cut(s) 308
BstF5I GGATG 1 cut(s) 318
BstFNI CGCG 2 cut(s) 81, 146
BstKTI GATC 1 cut(s) 135
BstMAI GTCTC 3 cut(s) 154, 185, 203
BstMBI GATC 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstPAI GACNNNNGTC 1 cut(s) 215
BstUI CGCG 2 cut(s) 81, 146
BstV1I GCAGC 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 10
BtgI CCRYGG 1 cut(s) 308
BtsCI GGATG 1 cut(s) 318
Cac8I GCNNGC 2 cut(s) 79, 345
Cfr13I GGNCC 1 cut(s) 115
CseI GACGC 1 cut(s) 70
Csp6I GTAC 2 cut(s) 157, 228
CviJI RGCY 4 cut(s) 74, 254, 307, 343
CviKI_1 RGCY 4 cut(s) 74, 254, 307, 343
CviQI GTAC 2 cut(s) 157, 228
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 115
EcoRI GAATTC 1 cut(s) 140
Esp3I CGTCTC 1 cut(s) 185
FaiI YATR 1 cut(s) 298
FalI AAGNNNNNCTT 3 cut(s) 34, 269, 301
FaqI GGGAC 3 cut(s) 81, 192, 314
FauI CCCGC 1 cut(s) 86
Fnu4HI GCNGC 4 cut(s) 72, 75, 205, 252
FokI GGATG 1 cut(s) 325
Fsp4HI GCNGC 4 cut(s) 72, 75, 205, 252
FspBI CTAG 1 cut(s) 6
GluI GCNGC 4 cut(s) 72, 75, 205, 252
HgaI GACGC 1 cut(s) 70
HinfI GANTC 4 cut(s) 94, 173, 180, 211
HphI GGTGA 1 cut(s) 149
Hpy188I TCNGA 2 cut(s) 154, 323
Hpy188III TCNNGA 2 cut(s) 177, 190
Hpy99I CGWCG 4 cut(s) 44, 47, 86, 269
HpyAV CCTTC 2 cut(s) 32, 346
HpyCH4III ACNGT 2 cut(s) 196, 239
HpyCH4IV ACGT 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 108
Kzo9I GATC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 3 cut(s) 200, 210, 357
Lsp1109I GCAGC 1 cut(s) 61
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 2 cut(s) 10, 17
MluCI AATT 3 cut(s) 140, 232, 317
MlyI GAGTC 3 cut(s) 103, 174, 205
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 6 cut(s) 41, 59, 62, 66, 76, 129
MseI TTAA 2 cut(s) 243, 367
MspCI CTTAAG 1 cut(s) 242
MvnI CGCG 2 cut(s) 81, 146
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 1 cut(s) 132
NlaIV GGNNCC 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 4 cut(s) 73, 76, 206, 253
PleI GAGTC 3 cut(s) 102, 174, 205
PpsI GAGTC 3 cut(s) 102, 174, 205
PshAI GACNNNNGTC 1 cut(s) 215
Psp1406I AACGTT 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 115
RsaI GTAC 2 cut(s) 158, 229
RsaNI GTAC 2 cut(s) 157, 228
SaqAI TTAA 2 cut(s) 243, 367
SatI GCNGC 4 cut(s) 72, 75, 205, 252
Sau3AI GATC 1 cut(s) 132
Sau96I GGNCC 1 cut(s) 115
SchI GAGTC 3 cut(s) 103, 174, 205
SetI ASST 4 cut(s) 15, 111, 219, 249
SinI GGWCC 1 cut(s) 115
SmlI CTYRAG 3 cut(s) 120, 182, 242
SmoI CTYRAG 3 cut(s) 120, 182, 242
SpeI ACTAGT 1 cut(s) 5
Sse9I AATT 3 cut(s) 140, 232, 317
SsiI CCGC 5 cut(s) 71, 79, 146, 204, 251
SspMI CTAG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 196, 239
TaiI ACGT 1 cut(s) 111
TaqI TCGA 2 cut(s) 189, 339
TasI AATT 3 cut(s) 140, 232, 317
TatI WGTACW 1 cut(s) 156
TauI GCSGC 3 cut(s) 74, 207, 254
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 2 cut(s) 243, 367
Tru9I TTAA 2 cut(s) 243, 367
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 3 cut(s) 128, 181, 282
Vha464I CTTAAG 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 2 cut(s) 140, 317
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.