Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Reverse (-)

30006956 .. 30007297

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1217400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCATCCTCACTACGTTGTCGCATTCTTTGCTCTACTTGTTCCTCTTGTCACCGCTGTTCCTGGCGCTTGGAACCCTGTAAACATTAGCGACCCATCTGTGATAGAGCTCGGAAAGTGGAGTGTTTCGGAGTACAACAAGAATGCCACAAAAAAGTTAGTATTTGAGAAACTGGTTTCGGGTGAATCCGTATTTCTATCAGGCAGTCTCTATGCGCTTGTTCTTGCGGCTAAGAATGAATCATTGGCTAATCCCGCTGAAAACTACTTAGCTGGTGTCTGGGTGCAATGGTGGCAACAAGTGAAATTGACAGCCTTTAAATACAAAGGCCATGAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

114

Amino Acids

12.56

Weight (kDa)

7.97

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	28 - 107	1.7e-18	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	54, 227, 255
AfaI	GTAC	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	2 cut(s)	109, 272
AluI	AGCT	2 cut(s)	109, 272
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	212
AoxI	GGCC	1 cut(s)	328
AspLEI	GCGC	2 cut(s)	68, 217
AsuHPI	GGTGA	2 cut(s)	43, 194
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	212
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	13
Bse1I	ACTGG	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	293
BseBI	CCWGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	4
BseMI	GCAATG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	212
BsmI	GAATGC	2 cut(s)	23, 148
BsnI	GGCC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	111
BspACI	CCGC	3 cut(s)	54, 227, 255
BspANI	GGCC	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstDEI	CTNAG	2 cut(s)	231, 268
BstF5I	GGATG	1 cut(s)	4
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	68, 217
BstMAI	GTCTC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 254, 292
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	4
CfoI	GCGC	2 cut(s)	68, 217
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	6 cut(s)	109, 230, 248, 272, 314, 330
CviKI_1	RGCY	6 cut(s)	109, 230, 248, 272, 314, 330
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	2 cut(s)	231, 268
DraI	TTTAAA	1 cut(s)	319
Ecl136II	GAGCTC	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	61
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	111
FaeI	CATG	1 cut(s)	335
FaiI	YATR	2 cut(s)	213, 333
FatI	CATG	1 cut(s)	331
FauI	CCCGC	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	228
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	228
GlaI	GCGC	2 cut(s)	67, 216
GluI	GCNGC	1 cut(s)	228
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	330
HhaI	GCGC	2 cut(s)	68, 217
Hin1II	CATG	1 cut(s)	335
Hin6I	GCGC	2 cut(s)	66, 215
HinP1I	GCGC	2 cut(s)	66, 215
HinfI	GANTC	2 cut(s)	185, 239
HphI	GGTGA	2 cut(s)	43, 194
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	113, 130
Hpy8I	GTNNAC	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	4, 286
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 254, 292
HpyF3I	CTNAG	2 cut(s)	231, 268
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	335
HspAI	GCGC	2 cut(s)	66, 215
LpnPI	CCDG	7 cut(s)	48, 75, 90, 158, 186, 258, 265
LweI	GCATC	1 cut(s)	13
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	1 cut(s)	305
MnlI	CCTC	2 cut(s)	18, 54
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	318
MspA1I	CMGCKG	2 cut(s)	56, 257
MspR9I	CCNGG	1 cut(s)	63
Mva1269I	GAATGC	2 cut(s)	23, 148
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	3 cut(s)	29, 254, 292
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	49
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	2 cut(s)	23, 148
PfeI	GAWTC	2 cut(s)	185, 239
PkrI	GCNGC	1 cut(s)	229
Psp124BI	GAGCTC	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	1 cut(s)	228
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	3 cut(s)	18, 111, 274
SfaNI	GCATC	1 cut(s)	13
Sse9I	AATT	1 cut(s)	305
SsiI	CCGC	3 cut(s)	54, 227, 255
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	61
TaiI	ACGT	1 cut(s)	18
TasI	AATT	1 cut(s)	305
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	2 cut(s)	185, 239
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	252
TspGWI	ACGGA	1 cut(s)	178
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.