Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Reverse (-)

45495953 .. 45496756

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025391

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCGTCTCCTCCTCCCCGCAATCCTGGCCCTCCTCTTCTCTCTCTCCGCCGCCGCCGCTGACAGCCCTGCGCTCGGTGGTTGGAAGCCGATCAAGAACATCAACGACCCCCACGTGAAGGAGATTGCGGAGTTCGCAGTGTCGGAGTACAACAAGAAATCTAAGAACAAGTTGGTGTTCCAGAGCGTCGTCAAAGGCGAGACTCAGGTGGTCGCTGGGGAAAACTTCTGGCTCGTCATTGCAGTCAAGGATAAATCCTCGGCTGTGAAATATGAGGCTGTTGTGTGGGAGAGGCTTTGGAAGTCGAAGTCCACCCCACCCCCGCCGTCTGTCACATTCTCATCGCCGTCGTCGGTTTACACTTCTTCCAACAAGCCGCCTGCATCGATGCAGTCGTTTTGTAATTTGTACAGCCCGAGAATCTTCAAAAAGGCCGGAATCAAGTCGAAGAACAAAAACTCCTCCGCCGTCGGATCCGTCAATACATTCTTCATCCTCGTCCCAACGTTTTTCCTGGACATCTTGCAGCAGAGAAGGAAGAACTGCTCGCCTCTGGCTTCCTCTAGATCGGCGGTAGCAATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

196

Amino Acids

21.34

Weight (kDa)

10.01

Isoelectric Point (pI)

56.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	26 - 97	7.8e-14	Cystatin domain
SQAPI	PF16845	31 - 102	1.5e-29	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	506
AclWI	GGATC	2 cut(s)	468, 481
AcvI	CACGTG	1 cut(s)	115
AfaI	GTAC	2 cut(s)	149, 410
AfiI	CCNNNNNNNGG	2 cut(s)	74, 118
AgsI	TTSAA	1 cut(s)	427
AjnI	CCWGG	2 cut(s)	24, 513
AloI	GAACNNNNNNTCC	2 cut(s)	443, 475
Alw26I	GTCTC	2 cut(s)	11, 194
AlwI	GGATC	2 cut(s)	468, 481
Ama87I	CYCGRG	1 cut(s)	415
AoxI	GGCC	2 cut(s)	27, 432
ApeKI	GCWGC	1 cut(s)	526
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	415
BamHI	GGATCC	1 cut(s)	473
BbrPI	CACGTG	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	538
BceAI	ACGGC	3 cut(s)	310, 331, 452
BciT130I	CCWGG	2 cut(s)	26, 515
BcoDI	GTCTC	2 cut(s)	11, 194
BfaI	CTAG	1 cut(s)	564
BisI	GCNGC	5 cut(s)	51, 54, 57, 377, 527
BlsI	GCNGC	5 cut(s)	52, 55, 58, 378, 528
Bme1390I	CCNGG	2 cut(s)	26, 515
BmeT110I	CYCGRG	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	475
BmrFI	CCNGG	2 cut(s)	26, 515
BmsI	GCATC	2 cut(s)	378, 392
Bsa29I	ATCGAT	1 cut(s)	386
BsaAI	YACGTR	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 118
Bse3DI	GCAATG	1 cut(s)	237
BseBI	CCWGG	2 cut(s)	26, 515
BseCI	ATCGAT	1 cut(s)	386
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	492
BseLI	CCNNNNNNNGG	2 cut(s)	74, 118
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	218
BseRI	GAGGAG	2 cut(s)	23, 451
BseXI	GCAGC	1 cut(s)	538
BseYI	CCCAGC	1 cut(s)	215
BshFI	GGCC	2 cut(s)	29, 434
BshVI	ATCGAT	1 cut(s)	386
BsiHKCI	CYCGRG	1 cut(s)	415
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	485
BslI	CCNNNNNNNGG	2 cut(s)	74, 118
BsmAI	GTCTC	2 cut(s)	11, 194
BsmBI	CGTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	485
BsnI	GGCC	2 cut(s)	29, 434
BsoBI	CYCGRG	1 cut(s)	415
Bsp1407I	TGTACA	1 cut(s)	408
Bsp143I	GATC	3 cut(s)	90, 473, 566
BspANI	GGCC	2 cut(s)	29, 434
BspCNI	CTCAG	1 cut(s)	217
BspDI	ATCGAT	1 cut(s)	386
BspLI	GGNNCC	1 cut(s)	475
BspPI	GGATC	2 cut(s)	468, 481
BsrDI	GCAATG	1 cut(s)	237
BsrGI	TGTACA	1 cut(s)	408
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	3 cut(s)	90, 473, 566
Bst2UI	CCWGG	2 cut(s)	26, 515
Bst6I	CTCTTC	1 cut(s)	41
BstAUI	TGTACA	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	381, 548
BstDEI	CTNAG	2 cut(s)	162, 204
BstF5I	GGATG	1 cut(s)	492
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	3 cut(s)	93, 476, 569
BstMAI	GTCTC	2 cut(s)	11, 194
BstMBI	GATC	3 cut(s)	90, 473, 566
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 56, 134
BstNI	CCWGG	2 cut(s)	26, 515
BstSCI	CCNGG	2 cut(s)	24, 513
BstV1I	GCAGC	1 cut(s)	538
BstX2I	RGATCY	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	473
Bsu15I	ATCGAT	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	29, 434
BsuTUI	ATCGAT	1 cut(s)	386
BtgZI	GCGATG	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	492
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	381, 548
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	28
ClaI	ATCGAT	1 cut(s)	386
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	148, 409
CviQI	GTAC	2 cut(s)	148, 409
DdeI	CTNAG	2 cut(s)	162, 204
DpnI	GATC	3 cut(s)	92, 475, 568
DpnII	GATC	3 cut(s)	90, 473, 566
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
EciI	GGCGGA	2 cut(s)	37, 454
Eco72I	CACGTG	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	415
EcoRII	CCWGG	2 cut(s)	24, 513
Esp3I	CGTCTC	1 cut(s)	11
FaiI	YATR	1 cut(s)	273
FaqI	GGGAC	1 cut(s)	485
FauI	CCCGC	2 cut(s)	25, 330
Fnu4HI	GCNGC	5 cut(s)	51, 54, 57, 377, 527
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	5 cut(s)	51, 54, 57, 377, 527
FspBI	CTAG	1 cut(s)	564
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	5 cut(s)	51, 54, 57, 377, 527
GsaI	CCCAGC	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	29, 434
HapII	CCGG	1 cut(s)	435
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	1 cut(s)	73
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	3 cut(s)	202, 420, 438
HpaII	CCGG	1 cut(s)	435
Hpy166II	GTNNAC	2 cut(s)	312, 358
Hpy188I	TCNGA	2 cut(s)	145, 473
Hpy188III	TCNNGA	3 cut(s)	94, 181, 564
Hpy8I	GTNNAC	2 cut(s)	312, 358
Hpy99I	CGWCG	4 cut(s)	191, 352, 355, 473
HpyAV	CCTTC	2 cut(s)	112, 528
HpyCH4IV	ACGT	2 cut(s)	114, 506
HpyCH4V	TGCA	4 cut(s)	242, 383, 391, 526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 56, 134
HpyF3I	CTNAG	2 cut(s)	162, 204
HpySE526I	ACGT	2 cut(s)	114, 506
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	3 cut(s)	90, 473, 566
Lsp1109I	GCAGC	1 cut(s)	538
LweI	GCATC	2 cut(s)	378, 392
MaeI	CTAG	1 cut(s)	564
MaeII	ACGT	2 cut(s)	114, 506
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	3 cut(s)	92, 475, 568
MboI	GATC	3 cut(s)	90, 473, 566
MboII	GAAGA	6 cut(s)	28, 357, 415, 460, 481, 550
MflI	RGATCY	1 cut(s)	473
MluCI	AATT	2 cut(s)	403, 579
MlyI	GAGTC	1 cut(s)	196
MmeI	TCCRAC	4 cut(s)	62, 123, 393, 451
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	2 cut(s)	26, 515
MvaI	CCWGG	2 cut(s)	26, 515
MwoI	GCNNNNNNNGC	3 cut(s)	26, 56, 134
NdeII	GATC	3 cut(s)	90, 473, 566
NlaIV	GGNNCC	1 cut(s)	475
NmeAIII	GCCGAG	1 cut(s)	239
NmuCI	GTSAC	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	3 cut(s)	111, 195, 392
PfeI	GAWTC	2 cut(s)	420, 438
PfoI	TCCNGGA	1 cut(s)	513
PkrI	GCNGC	5 cut(s)	52, 55, 58, 378, 528
PleI	GAGTC	1 cut(s)	196
PmaCI	CACGTG	1 cut(s)	115
PmlI	CACGTG	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	196
Ppu21I	YACGTR	1 cut(s)	115
Psp1406I	AACGTT	1 cut(s)	506
Psp6I	CCWGG	2 cut(s)	24, 513
PspCI	CACGTG	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	2 cut(s)	24, 513
PspN4I	GGNNCC	1 cut(s)	475
PspPI	GGNCC	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	473
RsaI	GTAC	2 cut(s)	149, 410
RsaNI	GTAC	2 cut(s)	148, 409
SatI	GCNGC	5 cut(s)	51, 54, 57, 377, 527
Sau3AI	GATC	3 cut(s)	90, 473, 566
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	2 cut(s)	26, 515
SetI	ASST	3 cut(s)	117, 210, 509
SfaNI	GCATC	2 cut(s)	378, 392
Sse9I	AATT	2 cut(s)	403, 579
SspMI	CTAG	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	24, 513
TaiI	ACGT	2 cut(s)	117, 509
TaqI	TCGA	3 cut(s)	305, 386, 446
TasI	AATT	2 cut(s)	403, 579
TatI	WGTACW	2 cut(s)	147, 408
TauI	GCSGC	4 cut(s)	53, 56, 59, 379
TfiI	GAWTC	2 cut(s)	420, 438
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	1 cut(s)	526
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	1 cut(s)	481
TspGWI	ACGGA	1 cut(s)	466
TspRI	CASTG	1 cut(s)	144
XbaI	TCTAGA	1 cut(s)	563
XspI	CTAG	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.