Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001706.1

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Forward (+)

142228 .. 143524

Gene Structure 1297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001706.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgcgtccattcttctgcctcctagcaatcctcgccgtcctcctccctctgacggcagccgcacgcggcggactggccggaggatggaagccgattaaggacatcaacgacccccacgtgaaggagatcgcggagttcgtggttgtcgccggcgagaactaccggctcgtcatcgccgtcaaggataactcggcggcggccaagtacgagggtgttgtgtatgagaagatttgggaacatactagggaattgctctccttcgatcaagtcaagaacctggacatgatcgaataccaccgccaccacaacgattgtgctcccacaaatccccttagacagaacgccattgcagagttggcggtctcggagcacaacaagcaattccaaaataagtatttaggggaacgcagcggagataagtatccggcttatagtgacggccattgcctagcaccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

152

Amino Acids

17.06

Weight (kDa)

6.37

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	66, 131
AciI	CCGC	9 cut(s)	60, 66, 69, 131, 194, 197, 298, 359, 411
AcoI	YGGCCR	3 cut(s)	75, 198, 439
AcvI	CACGTG	1 cut(s)	118
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	3 cut(s)	52, 84, 121
AjnI	CCWGG	1 cut(s)	276
Alw21I	GWGCWC	2 cut(s)	319, 372
Alw26I	GTCTC	1 cut(s)	367
AoxI	GGCC	3 cut(s)	75, 198, 439
ApeKI	GCWGC	2 cut(s)	56, 408
BbrPI	CACGTG	1 cut(s)	118
Bbv12I	GWGCWC	2 cut(s)	319, 372
BbvI	GCAGC	2 cut(s)	68, 420
BccI	CCATC	1 cut(s)	78
BceAI	ACGGC	4 cut(s)	20, 69, 161, 454
BciT130I	CCWGG	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	3 cut(s)	23, 243, 449
BfuI	GTATCC	1 cut(s)	432
BisI	GCNGC	6 cut(s)	57, 60, 67, 195, 198, 409
BlsI	GCNGC	6 cut(s)	58, 61, 68, 196, 199, 410
Bme1390I	CCNGG	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	278
BsaAI	YACGTR	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	420
BsaI	GGTCTC	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 84, 121
Bse118I	RCCGGY	2 cut(s)	149, 162
Bse1I	ACTGG	1 cut(s)	78
Bse3DI	GCAATG	2 cut(s)	345, 442
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	89
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	3 cut(s)	52, 84, 121
BseMI	GCAATG	2 cut(s)	345, 442
BseNI	ACTGG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	68, 420
Bsh1236I	CGCG	2 cut(s)	66, 131
BshFI	GGCC	3 cut(s)	77, 200, 441
BsiHKAI	GWGCWC	2 cut(s)	319, 372
BsiSI	CCGG	4 cut(s)	78, 150, 163, 425
BslI	CCNNNNNNNGG	3 cut(s)	52, 84, 121
BsmAI	GTCTC	1 cut(s)	367
BsnI	GGCC	3 cut(s)	77, 200, 441
Bso31I	GGTCTC	1 cut(s)	367
Bsp1286I	GDGCHC	2 cut(s)	319, 372
Bsp143I	GATC	3 cut(s)	126, 262, 285
BspACI	CCGC	9 cut(s)	60, 66, 69, 131, 194, 197, 298, 359, 411
BspANI	GGCC	3 cut(s)	77, 200, 441
BspFNI	CGCG	2 cut(s)	66, 131
BspTNI	GGTCTC	1 cut(s)	367
BsrDI	GCAATG	2 cut(s)	345, 442
BsrFI	RCCGGY	2 cut(s)	149, 162
BsrI	ACTGG	1 cut(s)	78
BssAI	RCCGGY	2 cut(s)	149, 162
BssMI	GATC	3 cut(s)	126, 262, 285
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	456
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	64, 151
BstDEI	CTNAG	1 cut(s)	332
BstF5I	GGATG	1 cut(s)	89
BstFNI	CGCG	2 cut(s)	66, 131
BstKTI	GATC	3 cut(s)	129, 265, 288
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	3 cut(s)	126, 262, 285
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 356, 376
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstUI	CGCG	2 cut(s)	66, 131
BstV1I	GCAGC	2 cut(s)	68, 420
BsuI	GTATCC	1 cut(s)	432
BsuRI	GGCC	3 cut(s)	77, 200, 441
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	64, 151
Cfr10I	RCCGGY	2 cut(s)	149, 162
Csp6I	GTAC	1 cut(s)	205
CspCI	CAANNNNNGTGG	2 cut(s)	293, 328
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	7 cut(s)	59, 77, 91, 166, 200, 428, 441
CviKI_1	RGCY	7 cut(s)	59, 77, 91, 166, 200, 428, 441
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	3 cut(s)	128, 264, 287
DpnII	GATC	3 cut(s)	126, 262, 285
EaeI	YGGCCR	3 cut(s)	75, 198, 439
EciI	GGCGGA	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	367
Eco72I	CACGTG	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	276
FaeI	CATG	1 cut(s)	286
FaiI	YATR	4 cut(s)	222, 240, 284, 432
FatI	CATG	1 cut(s)	282
Fnu4HI	GCNGC	6 cut(s)	57, 60, 67, 195, 198, 409
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	6 cut(s)	57, 60, 67, 195, 198, 409
FspBI	CTAG	3 cut(s)	23, 243, 449
GluI	GCNGC	6 cut(s)	57, 60, 67, 195, 198, 409
HaeIII	GGCC	3 cut(s)	77, 200, 441
HapII	CCGG	4 cut(s)	78, 150, 163, 425
Hin1II	CATG	1 cut(s)	286
HpaII	CCGG	4 cut(s)	78, 150, 163, 425
Hpy188I	TCNGA	2 cut(s)	51, 367
Hpy188III	TCNNGA	1 cut(s)	271
HpyAV	CCTTC	2 cut(s)	115, 268
HpyCH4III	ACNGT	1 cut(s)	456
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	350
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 356, 376
HpyF3I	CTNAG	1 cut(s)	332
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	286
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	126, 262, 285
LmnI	GCTCC	2 cut(s)	322, 367
LpnPI	CCDG	7 cut(s)	59, 91, 163, 176, 263, 290, 438
Lsp1109I	GCAGC	2 cut(s)	68, 420
MaeI	CTAG	3 cut(s)	23, 243, 449
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	3 cut(s)	128, 264, 287
MboI	GATC	3 cut(s)	126, 262, 285
MboII	GAAGA	2 cut(s)	4, 238
MhlI	GDGCHC	2 cut(s)	319, 372
MluCI	AATT	2 cut(s)	248, 380
MnlI	CCTC	7 cut(s)	29, 41, 50, 53, 57, 74, 202
MreI	CGCCGGCG	1 cut(s)	149
MroNI	GCCGGC	1 cut(s)	149
MseI	TTAA	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	411
MspI	CCGG	4 cut(s)	78, 150, 163, 425
MspR9I	CCNGG	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	2 cut(s)	66, 131
MwoI	GCNNNNNNNGC	3 cut(s)	32, 356, 376
NaeI	GCCGGC	1 cut(s)	151
NdeII	GATC	3 cut(s)	126, 262, 285
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	1 cut(s)	286
NmeAIII	GCCGAG	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	434
PcsI	WCGNNNNNNNCGW	3 cut(s)	114, 135, 174
PdiI	GCCGGC	1 cut(s)	151
PkrI	GCNGC	6 cut(s)	58, 61, 68, 196, 199, 410
PmaCI	CACGTG	1 cut(s)	118
PmlI	CACGTG	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	276
PspCI	CACGTG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	276
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	6 cut(s)	57, 60, 67, 195, 198, 409
Sau3AI	GATC	3 cut(s)	126, 262, 285
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	2 cut(s)	319, 372
SetI	ASST	2 cut(s)	120, 279
SgrAI	CRCCGGYG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	248, 380
SsiI	CCGC	9 cut(s)	60, 66, 69, 131, 194, 197, 298, 359, 411
SspMI	CTAG	3 cut(s)	23, 243, 449
StyD4I	CCNGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	456
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	261, 288
TasI	AATT	2 cut(s)	248, 380
TauI	GCSGC	4 cut(s)	62, 69, 197, 200
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	2 cut(s)	56, 408
Tsp45I	GTSAC	1 cut(s)	434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XspI	CTAG	3 cut(s)	23, 243, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.