Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Reverse (-)

60501075 .. 60501686

Gene Structure 612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0449900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCCAACTCCTCCTCCTCCTTCTTCAAACCCTCTCACATTTCAATCTGTCATTGCAGCTCTTTGTATTGCACCTATATTTTTTCTCATAACCGAAGCATTAGATCATACAACTTGTGCAGTTTTGATCCCATTTATCTTTCTAGCTGTTTGTTTAGTGGTCTTCTATGCTGTTGCAATTGTTGCTCAGATTATTGGCGCCGGACGATTCTCAAGTCTCTTGTTATCTCAAACACACAGACGGCTTAATTATCGTGATCAAATTCAGATCTACGTGTATCCGGCCGTCCGGCCTGGACACGATGACCAAGCTTGGCAAGATGGCTTGGAGAAGGTGCTACCACCACCCACTATTTACAGTAAAACTCAACATGAAGGTGAAGCTCATGAAGACGAAGGAGGGGTAGTGAAAAGTTGTAAAAGGAGTAGTAGTTGGAAACAGTGTGCTATTTGCATGGAGGATTTTGTGGAGGGTGAGTCTTGCCGTGTTCTGCCTACATGTGATCATATCTTCCATTTGATTTGTATCGACTCTTGGTTGAAGCTTCATCCATCTTGCCCTATTTGTCGCAAATCTATCTGCAAATGTACCTCTTGTGTTCTTGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

203

Amino Acids

22.56

Weight (kDa)

6.21

Isoelectric Point (pI)

57.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	147 - 190	1.9e-13	Ring finger domain
zf-RING_11	PF17123	147 - 176	3.5e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	147 - 189	3.2e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	151 - 190	2.6e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	121
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	1 cut(s)	589
AflIII	ACRYGT	2 cut(s)	273, 497
AgsI	TTSAA	3 cut(s)	27, 44, 541
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	5 cut(s)	59, 146, 311, 383, 544
AluI	AGCT	5 cut(s)	59, 146, 311, 383, 544
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	121
AoxI	GGCC	2 cut(s)	282, 290
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	389, 485
BanI	GGYRCC	1 cut(s)	197
BbsI	GAAGAC	2 cut(s)	154, 396
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	2 cut(s)	314, 559
BceAI	ACGGC	3 cut(s)	257, 269, 468
BciT130I	CCWGG	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	288
BclI	TGATCA	2 cut(s)	256, 502
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	143
BfoI	RGCGCY	1 cut(s)	201
BfuI	GTATCC	1 cut(s)	288
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	294
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	294
BpiI	GAAGAC	2 cut(s)	154, 396
BpuEI	CTTGAG	1 cut(s)	196
BsaAI	YACGTR	1 cut(s)	274
BsaBI	GATNNNNATC	1 cut(s)	524
BsaHI	GRCGYC	1 cut(s)	198
BsaXI	ACNNNNNCTCC	7 cut(s)	28, 390, 415, 420, 445, 461, 491
Bse3DI	GCAATG	1 cut(s)	51
Bse8I	GATNNNNATC	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	547
BseJI	GATNNNNATC	1 cut(s)	524
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	6
BseX3I	CGGCCG	1 cut(s)	282
BseXI	GCAGC	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	284, 292
BshNI	GGYRCC	1 cut(s)	197
BsiEI	CGRYCG	1 cut(s)	285
BsiSI	CCGG	3 cut(s)	201, 281, 289
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	2 cut(s)	284, 292
Bsp143I	GATC	5 cut(s)	103, 126, 256, 267, 502
BspANI	GGCC	2 cut(s)	284, 292
BspCNI	CTCAG	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	121
BspT107I	GGYRCC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	51
BssMI	GATC	5 cut(s)	103, 126, 256, 267, 502
BssNI	GRCGYC	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	359, 441
BstACI	GRCGYC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	274
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	547
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	5 cut(s)	106, 129, 259, 270, 505
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	5 cut(s)	103, 126, 256, 267, 502
BstMCI	CGRYCG	1 cut(s)	285
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	68
BstV2I	GAAGAC	2 cut(s)	154, 396
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BstZI	CGGCCG	1 cut(s)	282
BsuI	GTATCC	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	284, 292
BtsCI	GGATG	1 cut(s)	547
BtsIMutI	CAGTG	1 cut(s)	446
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	588
CviAII	CATG	4 cut(s)	371, 386, 454, 498
CviJI	RGCY	9 cut(s)	59, 146, 244, 284, 292, 311, 324, 383, 544
CviKI_1	RGCY	9 cut(s)	59, 146, 244, 284, 292, 311, 324, 383, 544
CviQI	GTAC	1 cut(s)	588
DdeI	CTNAG	1 cut(s)	186
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	5 cut(s)	105, 128, 258, 269, 504
DpnII	GATC	5 cut(s)	103, 126, 256, 267, 502
EaeI	YGGCCR	1 cut(s)	282
EagI	CGGCCG	1 cut(s)	282
EclXI	CGGCCG	1 cut(s)	282
Eco52I	CGGCCG	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	292
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
FaeI	CATG	4 cut(s)	374, 389, 457, 501
FaiI	YATR	9 cut(s)	77, 89, 108, 168, 372, 387, 455, 499, 507
FatI	CATG	4 cut(s)	370, 385, 453, 497
FbaI	TGATCA	2 cut(s)	256, 502
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	534
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	1 cut(s)	57
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	284, 292
HapII	CCGG	3 cut(s)	201, 281, 289
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	4 cut(s)	374, 389, 457, 501
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HindIII	AAGCTT	2 cut(s)	309, 542
HinfI	GANTC	3 cut(s)	207, 476, 530
HpaII	CCGG	3 cut(s)	201, 281, 289
HphI	GGTGA	2 cut(s)	389, 485
Hpy188I	TCNGA	2 cut(s)	189, 267
Hpy188III	TCNNGA	3 cut(s)	254, 386, 602
HpyAV	CCTTC	4 cut(s)	30, 325, 368, 389
HpyCH4III	ACNGT	2 cut(s)	359, 441
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	6 cut(s)	56, 71, 119, 176, 453, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	4 cut(s)	374, 389, 457, 501
HspAI	GCGC	1 cut(s)	198
KasI	GGCGCC	1 cut(s)	197
Ksp22I	TGATCA	2 cut(s)	256, 502
Kzo9I	GATC	5 cut(s)	103, 126, 256, 267, 502
LpnPI	CCDG	5 cut(s)	214, 279, 294, 302, 306
Lsp1109I	GCAGC	1 cut(s)	68
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	1 cut(s)	273
MalI	GATC	5 cut(s)	105, 128, 258, 269, 504
MboI	GATC	5 cut(s)	103, 126, 256, 267, 502
MboII	GAAGA	4 cut(s)	15, 154, 401, 502
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	1 cut(s)	267
MluCI	AATT	3 cut(s)	177, 247, 261
Mly113I	GGCGCC	1 cut(s)	198
MlyI	GAGTC	2 cut(s)	485, 524
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	8 cut(s)	21, 24, 27, 42, 392, 451, 463, 601
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	375
MspI	CCGG	3 cut(s)	201, 281, 289
MspR9I	CCNGG	1 cut(s)	294
MunI	CAATTG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	182
NarI	GGCGCC	1 cut(s)	198
NdeII	GATC	5 cut(s)	103, 126, 256, 267, 502
NlaIII	CATG	4 cut(s)	374, 389, 457, 501
NlaIV	GGNNCC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	501
PagI	TCATGA	1 cut(s)	385
PciI	ACATGT	1 cut(s)	497
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	2 cut(s)	484, 524
PluTI	GGCGCC	1 cut(s)	201
PpsI	GAGTC	2 cut(s)	484, 524
Ppu21I	YACGTR	1 cut(s)	274
PscI	ACATGT	1 cut(s)	497
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	267
RsaI	GTAC	1 cut(s)	589
RsaNI	GTAC	1 cut(s)	588
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	5 cut(s)	103, 126, 256, 267, 502
SchI	GAGTC	2 cut(s)	485, 524
ScrFI	CCNGG	1 cut(s)	294
SfoI	GGCGCC	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	3 cut(s)	177, 247, 261
SspDI	GGCGCC	1 cut(s)	197
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	292
TaaI	ACNGT	2 cut(s)	359, 441
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	528
TasI	AATT	3 cut(s)	177, 247, 261
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	1 cut(s)	446
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	3 cut(s)	387, 402, 536
TspRI	CASTG	1 cut(s)	446
XapI	RAATTY	1 cut(s)	261
XceI	RCATGY	1 cut(s)	501
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.