Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Forward (+)

95998992 .. 96000574

Gene Structure 1583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00075200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCCGAGAGAGCCTGCCATTGAGAATGGAGGAAGGTGCGAGTCGCCGTGCACGGGGGCGGTGCTCACTCGGCCCCCAGCGAGCTCTACTAGGTCACGATGCGTCCATTCTTCTGCCTCCTCGCAATCCTCGCCGTCCTCCTCCCTCTGGAAGCTGATTAAGGACATCAATGACCCCCACGTGAAGGAGATCGCGGAGTTCGCGGTGTCGGAGTACAACAAGAAATCCGGGAAAAAGCTGGAGTTTCAGAGCGTGGTGAAGGGCGAGACTCATGTCGTCGCCAGAGAGAACTACCGGCTCGTCATCGCCGTCAAGGATAACTTGACGGCGGCCAAGTACGAGGGTGTTGTGTATGAGAAGATTTGGGAGCATACTAGGGAATTGCTCTCCTTCGATCAAGTCAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

136

Amino Acids

15.18

Weight (kDa)

8.99

Isoelectric Point (pI)

50.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	53 - 134	4.8e-31	Aspartic acid proteinase inhibitor
Cystatin	PF00031	54 - 118	3.7e-12	Cystatin domain
PP1	PF07430	60 - 121	1.5e-06	Phloem filament protein PP1 cystatin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	194, 203
AciI	CCGC	4 cut(s)	59, 194, 203, 329
AcoI	YGGCCR	1 cut(s)	330
AcvI	CACGTG	1 cut(s)	181
AfaI	GTAC	2 cut(s)	215, 338
AfiI	CCNNNNNNNGG	3 cut(s)	53, 147, 184
AluBI	AGCT	3 cut(s)	84, 154, 238
AluI	AGCT	3 cut(s)	84, 154, 238
Alw21I	GWGCWC	3 cut(s)	53, 66, 86
Alw26I	GTCTC	1 cut(s)	260
Alw44I	GTGCAC	1 cut(s)	49
AoxI	GGCC	2 cut(s)	71, 330
ApaLI	GTGCAC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	268
BaeGI	GKGCMC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	86
BbrPI	CACGTG	1 cut(s)	181
Bbv12I	GWGCWC	3 cut(s)	53, 66, 86
BceAI	ACGGC	4 cut(s)	31, 118, 293, 342
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	2 cut(s)	90, 375
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	229
BmsI	GCATC	1 cut(s)	89
BoxI	GACNNNNGTC	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	229
BsaAI	YACGTR	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 147, 184
Bse118I	RCCGGY	1 cut(s)	294
BseLI	CCNNNNNNNGG	3 cut(s)	53, 147, 184
BseRI	GAGGAG	2 cut(s)	109, 130
BseSI	GKGCMC	1 cut(s)	53
BseYI	CCCAGC	1 cut(s)	76
Bsh1236I	CGCG	2 cut(s)	194, 203
BshFI	GGCC	2 cut(s)	73, 332
BsiHKAI	GWGCWC	3 cut(s)	53, 66, 86
BsiSI	CCGG	2 cut(s)	228, 295
BslI	CCNNNNNNNGG	3 cut(s)	53, 147, 184
BsmAI	GTCTC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	73, 332
Bsp1286I	GDGCHC	3 cut(s)	53, 66, 86
Bsp143I	GATC	2 cut(s)	189, 394
BspACI	CCGC	4 cut(s)	59, 194, 203, 329
BspANI	GGCC	2 cut(s)	73, 332
BspFNI	CGCG	2 cut(s)	194, 203
BspLI	GGNNCC	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	294
BssAI	RCCGGY	1 cut(s)	294
BssMI	GATC	2 cut(s)	189, 394
BstBAI	YACGTR	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	15, 82
BstFNI	CGCG	2 cut(s)	194, 203
BstKTI	GATC	2 cut(s)	192, 397
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	2 cut(s)	189, 394
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 70, 130, 200
BstPAI	GACNNNNGTC	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	227
BstSLI	GKGCMC	1 cut(s)	53
BstUI	CGCG	2 cut(s)	194, 203
BsuRI	GGCC	2 cut(s)	73, 332
BtgZI	GCGATG	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	15, 82
Cfr10I	RCCGGY	1 cut(s)	294
Cfr13I	GGNCC	1 cut(s)	72
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	214, 337
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	7 cut(s)	13, 73, 84, 154, 238, 298, 332
CviKI_1	RGCY	7 cut(s)	13, 73, 84, 154, 238, 298, 332
CviQI	GTAC	2 cut(s)	214, 337
DpnI	GATC	2 cut(s)	191, 396
DpnII	GATC	2 cut(s)	189, 394
EaeI	YGGCCR	1 cut(s)	330
Ecl136II	GAGCTC	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	86
Eco53kI	GAGCTC	1 cut(s)	84
Eco72I	CACGTG	1 cut(s)	181
EcoICRI	GAGCTC	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	86
FaeI	CATG	1 cut(s)	275
FaiI	YATR	3 cut(s)	273, 354, 372
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FatI	CATG	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	330
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	2 cut(s)	90, 375
GluI	GCNGC	1 cut(s)	330
GsaI	CCCAGC	1 cut(s)	80
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	2 cut(s)	73, 332
HapII	CCGG	2 cut(s)	228, 295
HgaI	GACGC	1 cut(s)	91
Hin1II	CATG	1 cut(s)	275
HinfI	GANTC	2 cut(s)	41, 268
HpaII	CCGG	2 cut(s)	228, 295
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	211, 249
Hpy188III	TCNNGA	3 cut(s)	96, 148, 403
Hpy8I	GTNNAC	1 cut(s)	51
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	4 cut(s)	27, 178, 253, 400
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 70, 130, 200
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	275
Kzo9I	GATC	2 cut(s)	189, 394
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	7 cut(s)	27, 90, 133, 224, 241, 295, 308
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	2 cut(s)	90, 375
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	93
MalI	GATC	2 cut(s)	191, 396
MboI	GATC	2 cut(s)	189, 394
MboII	GAAGA	2 cut(s)	102, 370
MhlI	GDGCHC	3 cut(s)	53, 66, 86
MluCI	AATT	1 cut(s)	380
MlyI	GAGTC	2 cut(s)	50, 262
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	8 cut(s)	23, 127, 130, 139, 148, 151, 155, 334
MseI	TTAA	1 cut(s)	159
MspI	CCGG	2 cut(s)	228, 295
MspR9I	CCNGG	1 cut(s)	229
MvnI	CGCG	2 cut(s)	194, 203
MwoI	GCNNNNNNNGC	4 cut(s)	10, 70, 130, 200
NciI	CCSGG	1 cut(s)	229
NdeII	GATC	2 cut(s)	189, 394
NlaIII	CATG	1 cut(s)	275
NlaIV	GGNNCC	1 cut(s)	74
NmeAIII	GCCGAG	2 cut(s)	30, 49
NmuCI	GTSAC	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PfoI	TCCNGGA	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	2 cut(s)	49, 262
PmaCI	CACGTG	1 cut(s)	181
PmlI	CACGTG	1 cut(s)	181
PpsI	GAGTC	2 cut(s)	49, 262
Ppu21I	YACGTR	1 cut(s)	181
PshAI	GACNNNNGTC	1 cut(s)	272
Psp124BI	GAGCTC	1 cut(s)	86
PspCI	CACGTG	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	72
RsaI	GTAC	2 cut(s)	215, 338
RsaNI	GTAC	2 cut(s)	214, 337
SacI	GAGCTC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	2 cut(s)	189, 394
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	2 cut(s)	50, 262
ScrFI	CCNGG	1 cut(s)	229
SduI	GDGCHC	3 cut(s)	53, 66, 86
SetI	ASST	6 cut(s)	38, 86, 95, 156, 183, 240
SfaNI	GCATC	1 cut(s)	89
Sse9I	AATT	1 cut(s)	380
SsiI	CCGC	4 cut(s)	59, 194, 203, 329
SspMI	CTAG	2 cut(s)	90, 375
SstI	GAGCTC	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	227
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	1 cut(s)	393
TasI	AATT	1 cut(s)	380
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	93
Tsp45I	GTSAC	1 cut(s)	93
VneI	GTGCAC	1 cut(s)	49
XspI	CTAG	2 cut(s)	90, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.