Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Forward (+)

7926178 .. 7926531

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G007490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCGTACTCAGTGCCTCTTCCTTGCACTTCTTGCTCTCCTCCTTCCTCTGGTCATAGCTGCCGGAGATCCATCTGAAGACCAAATTGCAGGTGGTTGGGAACCCATCAAGAATATTGGTGACCCGCATGTGCAAGATATTGCAAAGTGGGCGGTCACCGAGTACAACCAGCAATTCCACAAGGCGTTATTTTTCCTGAGGGTGGTTCAAGGCCAGGAACAAGTCGTAGCTGGAACAAATTATAAGCTTGTCATTAGTGTCAAGGATGGATCCTCTACTGTCAATTATGAGGGCTTCGTCTTTGAGAACTTACAAGAGACATCTAGAAAATTGGTCTCCTTTACTAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

117

Amino Acids

13.1

Weight (kDa)

6.07

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	31 - 103	7.1e-13	Cystatin domain
SQAPI	PF16845	36 - 115	8.1e-28	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	243
AarI	CACCTGC	1 cut(s)	80
Acc36I	ACCTGC	1 cut(s)	80
AciI	CCGC	2 cut(s)	125, 152
AclWI	GGATC	3 cut(s)	62, 264, 277
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	2 cut(s)	7, 164
AfiI	CCNNNNNNNGG	2 cut(s)	49, 202
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	3 cut(s)	59, 230, 247
AluI	AGCT	3 cut(s)	59, 230, 247
Alw26I	GTCTC	2 cut(s)	311, 340
AlwI	GGATC	3 cut(s)	62, 264, 277
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	59
AsuHPI	GGTGA	2 cut(s)	131, 148
AxyI	CCTNAGG	1 cut(s)	197
BamHI	GGATCC	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	3 cut(s)	79, 113, 260
BciT130I	CCWGG	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	311, 340
BfaI	CTAG	2 cut(s)	324, 345
BfuAI	ACCTGC	1 cut(s)	80
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	215
BmiI	GGNNCC	2 cut(s)	102, 271
BmrFI	CCNGG	1 cut(s)	215
BpiI	GAAGAC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 202
Bse21I	CCTNAGG	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	215
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	2 cut(s)	49, 202
BseMII	CTCAG	2 cut(s)	23, 188
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	46
BshFI	GGCC	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	63
BslI	CCNNNNNNNGG	2 cut(s)	49, 202
BsmAI	GTCTC	2 cut(s)	311, 340
BsnI	GGCC	1 cut(s)	213
Bso31I	GGTCTC	1 cut(s)	340
Bsp143I	GATC	2 cut(s)	67, 269
BspACI	CCGC	2 cut(s)	125, 152
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	2 cut(s)	22, 189
BspLI	GGNNCC	2 cut(s)	102, 271
BspMI	ACCTGC	1 cut(s)	80
BspPI	GGATC	3 cut(s)	62, 264, 277
BspTNI	GGTCTC	1 cut(s)	340
BssMI	GATC	2 cut(s)	67, 269
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstDEI	CTNAG	2 cut(s)	9, 197
BstEII	GGTNACC	2 cut(s)	119, 154
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	2 cut(s)	70, 272
BstMAI	GTCTC	2 cut(s)	311, 340
BstMBI	GATC	2 cut(s)	67, 269
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 149
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	131
BstPI	GGTNACC	2 cut(s)	119, 154
BstSCI	CCNGG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	2 cut(s)	67, 269
BstYI	RGATCY	2 cut(s)	67, 269
Bsu36I	CCTNAGG	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	17
BveI	ACCTGC	1 cut(s)	80
Csp6I	GTAC	2 cut(s)	6, 163
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	5 cut(s)	59, 213, 230, 247, 294
CviKI_1	RGCY	5 cut(s)	59, 213, 230, 247, 294
CviQI	GTAC	2 cut(s)	6, 163
DdeI	CTNAG	2 cut(s)	9, 197
DpnI	GATC	2 cut(s)	69, 271
DpnII	GATC	2 cut(s)	67, 269
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	96
Eco81I	CCTNAGG	1 cut(s)	197
Eco91I	GGTNACC	2 cut(s)	119, 154
EcoO65I	GGTNACC	2 cut(s)	119, 154
EcoRII	CCWGG	1 cut(s)	213
FaeI	CATG	1 cut(s)	131
FaiI	YATR	4 cut(s)	56, 129, 243, 288
FatI	CATG	1 cut(s)	127
FauI	CCCGC	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	2 cut(s)	324, 345
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	63
Hin1II	CATG	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	245
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	2 cut(s)	131, 148
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	3 cut(s)	109, 196, 324
HpyAV	CCTTC	1 cut(s)	53
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	4 cut(s)	26, 89, 133, 143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 149
HpyF3I	CTNAG	2 cut(s)	9, 197
Hsp92II	CATG	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	67, 269
LpnPI	CCDG	8 cut(s)	35, 75, 76, 182, 200, 209, 216, 227
Lsp1109I	GCAGC	1 cut(s)	46
MaeI	CTAG	2 cut(s)	324, 345
MaeIII	GTNAC	2 cut(s)	119, 154
MalI	GATC	2 cut(s)	69, 271
MboI	GATC	2 cut(s)	67, 269
MboII	GAAGA	2 cut(s)	10, 89
MflI	RGATCY	2 cut(s)	67, 269
MluCI	AATT	5 cut(s)	84, 173, 238, 283, 329
MnlI	CCTC	6 cut(s)	26, 50, 57, 192, 283, 283
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	32, 149
NdeII	GATC	2 cut(s)	67, 269
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	2 cut(s)	102, 271
NmuCI	GTSAC	2 cut(s)	119, 154
NspI	RCATGY	1 cut(s)	131
PaqCI	CACCTGC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	61
PsiI	TTATAA	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	213
PspEI	GGTNACC	2 cut(s)	119, 154
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	102, 271
PsuI	RGATCY	2 cut(s)	67, 269
RsaI	GTAC	2 cut(s)	7, 164
RsaNI	GTAC	2 cut(s)	6, 163
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	2 cut(s)	67, 269
ScrFI	CCNGG	1 cut(s)	215
SetI	ASST	4 cut(s)	61, 94, 232, 249
Sse9I	AATT	5 cut(s)	84, 173, 238, 283, 329
SsiI	CCGC	2 cut(s)	125, 152
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	2 cut(s)	324, 345
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	280
TasI	AATT	5 cut(s)	84, 173, 238, 283, 329
TatI	WGTACW	1 cut(s)	162
TscAI	CASTG	1 cut(s)	17
TseFI	GTSAC	2 cut(s)	119, 154
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	2 cut(s)	119, 154
TspRI	CASTG	1 cut(s)	17
XbaI	TCTAGA	1 cut(s)	323
XceI	RCATGY	1 cut(s)	131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	89
XspI	CTAG	2 cut(s)	324, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.