Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000156.1

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Reverse (-)

38884 .. 39225

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000156.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgatgcgccctcatgtgctcctcgcgttgcttgctcttcttgttcctcttgttgttgccgatcgtattgttgtttggaagcctataaacagcactagcgacccaatggtggtagacactgcaaagttcgcggtctctgaacacaacgaggaagccaaaacaaacctcgtatttgaaagtgtggtcgagggcagatatcaagttaatgcaggcatctattatgaactggttgtcaaagccaagaatgactcttcaccggcctctactgcaaattatgttaccgttgtctgggaccaccatctaggcgtcaggcatttgatagacttttataaaaaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

113

Amino Acids

12.71

Weight (kDa)

6.18

Isoelectric Point (pI)

22.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	2 cut(s)	26, 131
AciI	CCGC	1 cut(s)	131
AcyI	GRCGYC	1 cut(s)	306
AfiI	CCNNNNNNNGG	2 cut(s)	109, 288
AgsI	TTSAA	1 cut(s)	176
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	139
AoxI	GGCC	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	21
BccI	CCATC	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	2 cut(s)	96, 302
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	293
BmsI	GCATC	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 288
Bse118I	RCCGGY	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	231
BseLI	CCNNNNNNNGG	2 cut(s)	109, 288
BseNI	ACTGG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	11
Bsh1236I	CGCG	2 cut(s)	26, 131
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	260
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	2 cut(s)	109, 288
BsmAI	GTCTC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	260
Bso31I	GGTCTC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	260
BspFNI	CGCG	2 cut(s)	26, 131
BspLI	GGNNCC	1 cut(s)	293
BspQI	GCTCTTC	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	256
BssMI	GATC	1 cut(s)	61
BssNI	GRCGYC	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	2 cut(s)	42, 256
BstACI	GRCGYC	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	33, 211
BstFNI	CGCG	2 cut(s)	26, 131
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	61
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 128, 266
BstUI	CGCG	2 cut(s)	26, 131
BsuRI	GGCC	1 cut(s)	260
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	33, 211
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	295
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	4 cut(s)	82, 155, 239, 260
CviKI_1	RGCY	4 cut(s)	82, 155, 239, 260
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	42, 256
EarI	CTCTTC	2 cut(s)	42, 256
Eco31I	GGTCTC	1 cut(s)	139
Eco32I	GATATC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	197
FaeI	CATG	1 cut(s)	17
FaiI	YATR	5 cut(s)	15, 86, 222, 276, 330
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	1 cut(s)	13
FblI	GTMKAC	1 cut(s)	114
FspBI	CTAG	2 cut(s)	96, 302
GlaI	GCGC	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	1 cut(s)	295
HhaI	GCGC	1 cut(s)	9
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	1 cut(s)	17
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	248
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	1 cut(s)	246
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	3 cut(s)	122, 209, 269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 128, 266
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	17
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	61
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	5 cut(s)	195, 212, 270, 274, 295
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	2 cut(s)	96, 302
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	2 cut(s)	29, 243
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	1 cut(s)	271
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	7 cut(s)	21, 32, 57, 142, 176, 181, 271
MseI	TTAA	1 cut(s)	204
MspI	CCGG	1 cut(s)	257
MvnI	CGCG	2 cut(s)	26, 131
MwoI	GCNNNNNNNGC	3 cut(s)	32, 128, 266
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	1 cut(s)	293
PciSI	GCTCTTC	1 cut(s)	42
Ple19I	CGATCG	1 cut(s)	64
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PsiI	TTATAA	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	1 cut(s)	292
PvuI	CGATCG	1 cut(s)	64
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	1 cut(s)	168
SfaNI	GCATC	1 cut(s)	222
SinI	GGWCC	1 cut(s)	292
Sse9I	AATT	1 cut(s)	271
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	2 cut(s)	96, 302
TaaI	ACNGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	186
TasI	AATT	1 cut(s)	271
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	2 cut(s)	96, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.