Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Reverse (-)

420852 .. 421184

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCGTCCATTCTGCCTCCTCGCAATCCTCGCCGTCCTCCTCCCTCTGGCCGCCGCCGTTCCCGGCGGATGGAGCCCGATCAAGGACATCAACGACCCCCACGTGAAGGAGATTGCCGAGTTCGCGGTGTCGGAGTACAACAAGGAATCCGGGAAGAAGCTCGAGTTGCAGCGCGTGGTGAAGGGCGAGACTCAGGTCGTCGCCGGCCAGAACTTCCGGCTCCTCCTCGCCGTCAAGGATGACACAACGGCGGCCAAGTACGTGGGCGTCGTGTATGAGCGTGTTTGGGAGCATACCAGAAAATTGCTCTCATTTGATCAAGTCAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

111

Amino Acids

12.31

Weight (kDa)

9.07

Isoelectric Point (pI)

23.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	22 - 84	1.4e-15	Cystatin domain
SQAPI	PF16845	27 - 108	1.7e-31	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	125, 174
AciI	CCGC	5 cut(s)	51, 54, 66, 125, 251
AcoI	YGGCCR	3 cut(s)	48, 205, 252
AcvI	CACGTG	1 cut(s)	103
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	2 cut(s)	137, 260
AfiI	CCNNNNNNNGG	4 cut(s)	46, 69, 82, 106
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	182
Ama87I	CYCGRG	1 cut(s)	161
AoxI	GGCC	3 cut(s)	48, 205, 252
ApeKI	GCWGC	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	174
AsuC2I	CCSGG	2 cut(s)	63, 151
AsuHPI	GGTGA	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	77
BbrPI	CACGTG	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	1 cut(s)	63
BceAI	ACGGC	4 cut(s)	17, 41, 215, 264
BclI	TGATCA	1 cut(s)	316
BcnI	CCSGG	2 cut(s)	63, 151
BcoDI	GTCTC	1 cut(s)	182
BisI	GCNGC	4 cut(s)	51, 54, 170, 252
BlsI	GCNGC	4 cut(s)	52, 55, 171, 253
Bme1390I	CCNGG	2 cut(s)	63, 151
BmeT110I	CYCGRG	1 cut(s)	161
BmiI	GGNNCC	2 cut(s)	74, 221
BmrFI	CCNGG	2 cut(s)	63, 151
BoxI	GACNNNNGTC	1 cut(s)	194
BpuMI	CCSGG	2 cut(s)	63, 151
BsaAI	YACGTR	2 cut(s)	103, 262
BsaHI	GRCGYC	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 69, 82, 106
Bse118I	RCCGGY	1 cut(s)	203
BseGI	GGATG	2 cut(s)	74, 244
BseLI	CCNNNNNNNGG	4 cut(s)	46, 69, 82, 106
BseMII	CTCAG	1 cut(s)	206
BseRI	GAGGAG	4 cut(s)	8, 29, 212, 215
BseXI	GCAGC	1 cut(s)	181
Bsh1236I	CGCG	2 cut(s)	125, 174
BshFI	GGCC	3 cut(s)	50, 207, 254
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	4 cut(s)	63, 150, 204, 217
BslI	CCNNNNNNNGG	4 cut(s)	46, 69, 82, 106
BsmAI	GTCTC	1 cut(s)	182
BsnI	GGCC	3 cut(s)	50, 207, 254
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	78, 316
BspACI	CCGC	5 cut(s)	51, 54, 66, 125, 251
BspANI	GGCC	3 cut(s)	50, 207, 254
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	2 cut(s)	125, 174
BspLI	GGNNCC	2 cut(s)	74, 221
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssMI	GATC	2 cut(s)	78, 316
BssNI	GRCGYC	1 cut(s)	267
BstACI	GRCGYC	1 cut(s)	267
BstBAI	YACGTR	2 cut(s)	103, 262
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	74, 244
BstFNI	CGCG	2 cut(s)	125, 174
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	2 cut(s)	81, 319
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	2 cut(s)	78, 316
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 72, 122, 166
BstPAI	GACNNNNGTC	1 cut(s)	194
BstSCI	CCNGG	2 cut(s)	61, 149
BstUI	CGCG	2 cut(s)	125, 174
BstV1I	GCAGC	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	262
BsuRI	GGCC	3 cut(s)	50, 207, 254
BtsCI	GGATG	2 cut(s)	74, 244
Cac8I	GCNNGC	1 cut(s)	205
CfoI	GCGC	1 cut(s)	174
Cfr10I	RCCGGY	1 cut(s)	203
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	136, 259
CviJI	RGCY	6 cut(s)	50, 75, 160, 207, 220, 254
CviKI_1	RGCY	6 cut(s)	50, 75, 160, 207, 220, 254
CviQI	GTAC	2 cut(s)	136, 259
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	2 cut(s)	80, 318
DpnII	GATC	2 cut(s)	78, 316
EaeI	YGGCCR	3 cut(s)	48, 205, 252
EciI	GGCGGA	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	77
Eco72I	CACGTG	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	77
FaiI	YATR	2 cut(s)	276, 294
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	4 cut(s)	51, 54, 170, 252
FokI	GGATG	2 cut(s)	81, 251
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	4 cut(s)	51, 54, 170, 252
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	4 cut(s)	51, 54, 170, 252
HaeIII	GGCC	3 cut(s)	50, 207, 254
HapII	CCGG	4 cut(s)	63, 150, 204, 217
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	267
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HinfI	GANTC	2 cut(s)	146, 190
HpaII	CCGG	4 cut(s)	63, 150, 204, 217
HphI	GGTGA	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	325
Hpy99I	CGWCG	2 cut(s)	203, 272
HpyAV	CCTTC	2 cut(s)	100, 175
HpyCH4IV	ACGT	2 cut(s)	102, 261
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 72, 122, 166
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	2 cut(s)	102, 261
Hsp92I	GRCGYC	1 cut(s)	267
HspAI	GCGC	1 cut(s)	172
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	78, 316
LmnI	GCTCC	3 cut(s)	72, 225, 289
LpnPI	CCDG	8 cut(s)	32, 76, 163, 179, 217, 221, 230, 310
Lsp1109I	GCAGC	1 cut(s)	181
MaeII	ACGT	2 cut(s)	102, 261
MalI	GATC	2 cut(s)	80, 318
MboI	GATC	2 cut(s)	78, 316
MboII	GAAGA	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	184
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	8 cut(s)	26, 29, 38, 47, 50, 54, 233, 236
MroNI	GCCGGC	1 cut(s)	203
MspI	CCGG	4 cut(s)	63, 150, 204, 217
MspR9I	CCNGG	2 cut(s)	63, 151
MvnI	CGCG	2 cut(s)	125, 174
MwoI	GCNNNNNNNGC	4 cut(s)	29, 72, 122, 166
NaeI	GCCGGC	1 cut(s)	205
NciI	CCSGG	2 cut(s)	63, 151
NdeII	GATC	2 cut(s)	78, 316
NgoMIV	GCCGGC	1 cut(s)	203
NlaIV	GGNNCC	2 cut(s)	74, 221
NmeAIII	GCCGAG	1 cut(s)	142
PaeR7I	CTCGAG	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 267
PdiI	GCCGGC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	146
PfoI	TCCNGGA	1 cut(s)	149
PkrI	GCNGC	4 cut(s)	52, 55, 171, 253
PleI	GAGTC	1 cut(s)	184
PmaCI	CACGTG	1 cut(s)	103
PmlI	CACGTG	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	184
Ppu21I	YACGTR	2 cut(s)	103, 262
PshAI	GACNNNNGTC	1 cut(s)	194
PspCI	CACGTG	1 cut(s)	103
PspN4I	GGNNCC	2 cut(s)	74, 221
PspXI	VCTCGAGB	1 cut(s)	161
RsaI	GTAC	2 cut(s)	137, 260
RsaNI	GTAC	2 cut(s)	136, 259
SatI	GCNGC	4 cut(s)	51, 54, 170, 252
Sau3AI	GATC	2 cut(s)	78, 316
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	2 cut(s)	63, 151
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	4 cut(s)	105, 162, 198, 264
Sfr274I	CTCGAG	1 cut(s)	161
SlaI	CTCGAG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	302
SsiI	CCGC	5 cut(s)	51, 54, 66, 125, 251
StyD4I	CCNGG	2 cut(s)	61, 149
TaiI	ACGT	2 cut(s)	105, 264
TaqI	TCGA	1 cut(s)	162
TasI	AATT	1 cut(s)	302
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	3 cut(s)	53, 56, 254
TfiI	GAWTC	1 cut(s)	146
TseI	GCWGC	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.