Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Forward (+)

6978709 .. 6979226

Gene Structure 518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG089100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGATGTGTACTCAGTGCCTCTTCCTTGCACTTCTTTCTCTCCTCCTTCCTCTGGTCGCAGCTGCCGGAGATCCATTTGAAGACCAAATTGCAGGTGGTTGGGAACCCATCAAGAATATCGGTGACCCGCATGTGCAAGATATAGCAAAGTGGGCGGTCACCGAGTACAACCAGCAATCCCACAAGGCGTTATTTTTCTTGAGGGTGGTTCAAGGCCAGGAACAAGTCGTAGCTGGAACAAATTATAAGCTTGTCATTAGTGTCAAGGATGGATCCTCGACTGTGAATTATGAGAGCTTCGTCTTTGAGAACTTACAAGAGACATCTAGAAAATTGGTCTCCTTTACTAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

118

Amino Acids

13.18

Weight (kDa)

5.59

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	32 - 105	4.5e-14	Cystatin domain
SQAPI	PF16845	37 - 116	6.7e-29	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	246
AarI	CACCTGC	1 cut(s)	83
Acc36I	ACCTGC	1 cut(s)	83
AciI	CCGC	2 cut(s)	128, 155
AclWI	GGATC	3 cut(s)	65, 267, 280
AfaI	GTAC	2 cut(s)	10, 167
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	2 cut(s)	80, 212
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	4 cut(s)	62, 233, 250, 297
AluI	AGCT	4 cut(s)	62, 233, 250, 297
Alw26I	GTCTC	2 cut(s)	314, 343
AlwI	GGATC	3 cut(s)	65, 267, 280
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	2 cut(s)	59, 62
AsuHPI	GGTGA	2 cut(s)	134, 151
BamHI	GGATCC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	49, 71
BccI	CCATC	2 cut(s)	116, 263
BciT130I	CCWGG	1 cut(s)	218
BcoDI	GTCTC	2 cut(s)	314, 343
BfaI	CTAG	2 cut(s)	327, 348
BfuAI	ACCTGC	1 cut(s)	83
BisI	GCNGC	2 cut(s)	60, 63
BlsI	GCNGC	2 cut(s)	61, 64
Bme1390I	CCNGG	1 cut(s)	218
BmiI	GGNNCC	2 cut(s)	105, 274
BmrFI	CCNGG	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	218
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	49, 71
BshFI	GGCC	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	2 cut(s)	314, 343
BsnI	GGCC	1 cut(s)	216
Bso31I	GGTCTC	1 cut(s)	343
Bsp143I	GATC	2 cut(s)	70, 272
BspACI	CCGC	2 cut(s)	128, 155
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	105, 274
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	3 cut(s)	65, 267, 280
BspTNI	GGTCTC	1 cut(s)	343
BssMI	GATC	2 cut(s)	70, 272
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	12
BstEII	GGTNACC	2 cut(s)	122, 157
BstF5I	GGATG	1 cut(s)	274
BstKTI	GATC	2 cut(s)	73, 275
BstMAI	GTCTC	2 cut(s)	314, 343
BstMBI	GATC	2 cut(s)	70, 272
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	134
BstPI	GGTNACC	2 cut(s)	122, 157
BstSCI	CCNGG	1 cut(s)	216
BstV1I	GCAGC	2 cut(s)	49, 71
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	2 cut(s)	70, 272
BstYI	RGATCY	2 cut(s)	70, 272
BsuRI	GGCC	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	20
BveI	ACCTGC	1 cut(s)	83
Csp6I	GTAC	2 cut(s)	9, 166
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	5 cut(s)	62, 216, 233, 250, 297
CviKI_1	RGCY	5 cut(s)	62, 216, 233, 250, 297
CviQI	GTAC	2 cut(s)	9, 166
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	2 cut(s)	72, 274
DpnII	GATC	2 cut(s)	70, 272
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco31I	GGTCTC	1 cut(s)	343
Eco91I	GGTNACC	2 cut(s)	122, 157
EcoO65I	GGTNACC	2 cut(s)	122, 157
EcoRII	CCWGG	1 cut(s)	216
FaeI	CATG	1 cut(s)	134
FaiI	YATR	4 cut(s)	132, 143, 246, 291
FatI	CATG	1 cut(s)	130
FauI	CCCGC	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	60, 63
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	2 cut(s)	60, 63
FspBI	CTAG	2 cut(s)	327, 348
GluI	GCNGC	2 cut(s)	60, 63
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	1 cut(s)	66
Hin1II	CATG	1 cut(s)	134
HindIII	AAGCTT	1 cut(s)	248
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	2 cut(s)	134, 151
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188III	TCNNGA	3 cut(s)	112, 199, 327
Hpy8I	GTNNAC	1 cut(s)	9
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	3 cut(s)	29, 92, 136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	70, 272
LpnPI	CCDG	7 cut(s)	38, 78, 79, 185, 203, 219, 230
Lsp1109I	GCAGC	2 cut(s)	49, 71
MaeI	CTAG	2 cut(s)	327, 348
MaeIII	GTNAC	2 cut(s)	122, 157
MalI	GATC	2 cut(s)	72, 274
MboI	GATC	2 cut(s)	70, 272
MboII	GAAGA	2 cut(s)	13, 92
MflI	RGATCY	2 cut(s)	70, 272
MluCI	AATT	4 cut(s)	87, 241, 286, 332
MnlI	CCTC	5 cut(s)	29, 53, 60, 195, 286
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	2 cut(s)	70, 272
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	2 cut(s)	105, 274
NmuCI	GTSAC	2 cut(s)	122, 157
NspI	RCATGY	1 cut(s)	134
PaqCI	CACCTGC	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	61, 64
PsiI	TTATAA	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	216
PspEI	GGTNACC	2 cut(s)	122, 157
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	105, 274
PsuI	RGATCY	2 cut(s)	70, 272
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	2 cut(s)	10, 167
RsaNI	GTAC	2 cut(s)	9, 166
SatI	GCNGC	2 cut(s)	60, 63
Sau3AI	GATC	2 cut(s)	70, 272
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	5 cut(s)	64, 97, 235, 252, 299
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	4 cut(s)	87, 241, 286, 332
SsiI	CCGC	2 cut(s)	128, 155
SspMI	CTAG	2 cut(s)	327, 348
StyD4I	CCNGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	278
TasI	AATT	4 cut(s)	87, 241, 286, 332
TatI	WGTACW	2 cut(s)	8, 165
TscAI	CASTG	1 cut(s)	20
TseFI	GTSAC	2 cut(s)	122, 157
TseI	GCWGC	2 cut(s)	59, 62
Tsp45I	GTSAC	2 cut(s)	122, 157
TspRI	CASTG	1 cut(s)	20
XbaI	TCTAGA	1 cut(s)	326
XceI	RCATGY	1 cut(s)	134
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
XspI	CTAG	2 cut(s)	327, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.