Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000341

Physical Location & Seq

Genomic Coordinates Forward (+)

60610698 .. 60616152

Gene Structure 5455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0451200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCGATGGAGTCGAACACCGGGTTTCTACATGATGAGACTTTTGGCTATGGATTGAACCGGCACGCGATATCTTTCCAGTCTGGAGCAATAAACAGCAGCTCGGAGATGATTCCGATGGGGAATTACTTTAGTACTGACCCGGTGATGGGGATGGGGATGATGTTCTCTCCGAATTTGGGGTCAGGCATGGGCATGGGCATGGTCAACCACAGTCCTGTAATTAGTCAACCCGGGACTTCATCAGGGGCTTCTCTGCTTGTTGATTCGGTACCGGGCCTCAAGCATGACACAGGCTTGGCAGTTGAGTGGTCTATGGAGGAGCAATACAAATTGGAGGAGGGCCTTGTCAAATTTGCTGATGAACCAAGTACTATGAGGTATGCTGATGAACCGAGTATTATGAGGTACATAAAGATTGCGGCAACCTTGCGTGATAAAACTGTGCGTGATGTTGCCTTGAGGTGTAGGTGGATGACGAGAAAGCGAAGGAAACCTGAAGACCATACTACAGGAAAGAAGGGCAACATTAGGAAGGATAAACTGGTAGAATCATACTCCAAGATGAGCATACCCTCAGCTCCACAACACAACATGGCTGCATATTCTCTTATGATGCATCGTATGAACCAGAATGAGCGTTTGCAGTGTGAAGGAATAAGTGGGACAGCCAAGCATTTATTGGACCAAAATGCTCAAGCTTTTAATCAAATCACAGCTAACCTTTCTACGTACAAGTTACAGGACAATATTAACCTCTTCTGTCGCACAAGGAACAACTTAACTGCCATCTTGAATGACATGAGAGGTATGCCTGGCTTAATGAGCCAAATGCCACCGCTGGATGTATGCATAAATGAGGACCTTGCTAATAGTGTTATCTTGCGTAATACAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

299

Amino Acids

33.3

Weight (kDa)

7.72

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3755	PF12579	244 - 277	7.5e-19	Protein of unknown function (DUF3755)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27420 AT3G49340
fragaria_vesca	FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica	MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica	Prupe.4G059600_v2.0.a1
pyrus_communis	pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis	RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata	RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora	Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii	Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa	Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha	Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana	Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	271
AccB1I	GGYRCC	1 cut(s)	271
AccII	CGCG	1 cut(s)	68
AciI	CCGC	2 cut(s)	422, 839
AcsI	RAATTY	2 cut(s)	175, 353
AcuI	CTGAAG	1 cut(s)	519
AfaI	GTAC	5 cut(s)	136, 273, 373, 410, 734
AfiI	CCNNNNNNNGG	3 cut(s)	148, 149, 179
AgsI	TTSAA	2 cut(s)	58, 796
AjnI	CCWGG	1 cut(s)	814
AluBI	AGCT	4 cut(s)	102, 581, 701, 719
AluI	AGCT	4 cut(s)	102, 581, 701, 719
Alw26I	GTCTC	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	2 cut(s)	277, 343
ApeKI	GCWGC	2 cut(s)	99, 599
ApoI	RAATTY	2 cut(s)	175, 353
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
Asp718I	GGTACC	1 cut(s)	271
AspS9I	GGNCC	4 cut(s)	277, 343, 685, 862
AsuC2I	CCSGG	5 cut(s)	22, 143, 234, 235, 276
AsuHPI	GGTGA	1 cut(s)	157
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	2 cut(s)	685, 862
BanI	GGYRCC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	507
BbvCI	CCTCAGC	1 cut(s)	577
BbvI	GCAGC	2 cut(s)	111, 586
BccI	CCATC	4 cut(s)	112, 142, 148, 797
BciT130I	CCWGG	1 cut(s)	816
BcnI	CCSGG	5 cut(s)	22, 143, 234, 235, 276
BcoDI	GTCTC	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	510
BisI	GCNGC	3 cut(s)	100, 423, 600
BlsI	GCNGC	3 cut(s)	101, 424, 601
BmcAI	AGTACT	2 cut(s)	136, 373
Bme1390I	CCNGG	6 cut(s)	22, 143, 234, 235, 276, 816
Bme18I	GGWCC	2 cut(s)	685, 862
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	4 cut(s)	277, 343, 685, 862
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	6 cut(s)	22, 143, 234, 235, 276, 816
BmsI	GCATC	2 cut(s)	606, 628
BpiI	GAAGAC	1 cut(s)	507
BpmI	CTGGAG	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	577
BpuEI	CTTGAG	3 cut(s)	266, 481, 681
BpuMI	CCSGG	5 cut(s)	22, 143, 234, 235, 276
BsaAI	YACGTR	1 cut(s)	732
BsaJI	CCNNGG	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 149, 179
Bse118I	RCCGGY	1 cut(s)	60
Bse1I	ACTGG	2 cut(s)	79, 549
BseBI	CCWGG	1 cut(s)	816
BseDI	CCNNGG	1 cut(s)	233
BseGI	GGATG	4 cut(s)	159, 165, 480, 850
BseLI	CCNNNNNNNGG	3 cut(s)	148, 149, 179
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	2 cut(s)	79, 549
BseRI	GAGGAG	2 cut(s)	335, 353
BseXI	GCAGC	2 cut(s)	111, 586
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	2 cut(s)	279, 345
BshNI	GGYRCC	1 cut(s)	271
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	5 cut(s)	21, 61, 143, 234, 275
BslFI	GGGAC	2 cut(s)	250, 679
BslI	CCNNNNNNNGG	3 cut(s)	148, 149, 179
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	2 cut(s)	250, 679
BsnI	GGCC	2 cut(s)	279, 345
BsoBI	CYCGRG	1 cut(s)	233
BspACI	CCGC	2 cut(s)	422, 839
BspANI	GGCC	2 cut(s)	279, 345
BspCNI	CTCAG	1 cut(s)	590
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	273
BspT107I	GGYRCC	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	79, 549
BssAI	RCCGGY	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	816
Bst4CI	ACNGT	2 cut(s)	215, 445
Bst6I	CTCTTC	1 cut(s)	764
BstBAI	YACGTR	1 cut(s)	732
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	577, 897
BstF5I	GGATG	4 cut(s)	159, 165, 480, 850
BstFNI	CGCG	1 cut(s)	68
BstMAI	GTCTC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	1 cut(s)	825
BstNI	CCWGG	1 cut(s)	816
BstSCI	CCNGG	6 cut(s)	20, 141, 232, 233, 274, 814
BstSFI	CTRYAG	1 cut(s)	510
BstSNI	TACGTA	1 cut(s)	732
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	111, 586
BstV2I	GAAGAC	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	279, 345
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	4 cut(s)	159, 165, 480, 850
BtsI	GCAGTG	1 cut(s)	653
BtsIMutI	CAGTG	1 cut(s)	653
Cac8I	GCNNGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	60
Cfr13I	GGNCC	4 cut(s)	277, 343, 685, 862
Cfr9I	CCCGGG	1 cut(s)	233
Csp6I	GTAC	5 cut(s)	135, 272, 372, 409, 733
CviAII	CATG	7 cut(s)	32, 190, 196, 202, 287, 595, 802
CviQI	GTAC	5 cut(s)	135, 272, 372, 409, 733
DdeI	CTNAG	2 cut(s)	577, 897
Eam1104I	CTCTTC	1 cut(s)	764
EarI	CTCTTC	1 cut(s)	764
Eco105I	TACGTA	1 cut(s)	732
Eco32I	GATATC	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	685, 862
Eco57I	CTGAAG	1 cut(s)	519
Eco88I	CYCGRG	1 cut(s)	233
EcoO109I	RGGNCCY	2 cut(s)	343, 862
EcoRII	CCWGG	1 cut(s)	814
EcoRV	GATATC	1 cut(s)	72
EcoT22I	ATGCAT	2 cut(s)	621, 854
FaeI	CATG	7 cut(s)	35, 193, 199, 205, 290, 598, 805
FaqI	GGGAC	2 cut(s)	250, 679
FatI	CATG	7 cut(s)	31, 189, 195, 201, 286, 594, 801
Fnu4HI	GCNGC	3 cut(s)	100, 423, 600
FokI	GGATG	4 cut(s)	166, 172, 487, 857
Fsp4HI	GCNGC	3 cut(s)	100, 423, 600
GluI	GCNGC	3 cut(s)	100, 423, 600
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	279, 345
HapII	CCGG	5 cut(s)	21, 61, 143, 234, 275
Hin1II	CATG	7 cut(s)	35, 193, 199, 205, 290, 598, 805
HincII	GTYRAC	2 cut(s)	208, 230
HindII	GTYRAC	2 cut(s)	208, 230
HindIII	AAGCTT	1 cut(s)	699
HinfI	GANTC	4 cut(s)	11, 112, 266, 551
HpaII	CCGG	5 cut(s)	21, 61, 143, 234, 275
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	2 cut(s)	208, 230
Hpy188I	TCNGA	3 cut(s)	106, 117, 174
Hpy188III	TCNNGA	2 cut(s)	84, 793
Hpy8I	GTNNAC	2 cut(s)	208, 230
HpyAV	CCTTC	4 cut(s)	483, 514, 529, 647
HpyCH4III	ACNGT	2 cut(s)	215, 445
HpyCH4IV	ACGT	1 cut(s)	731
HpyCH4V	TGCA	4 cut(s)	602, 619, 646, 852
HpyF10VI	GCNNNNNNNGC	1 cut(s)	825
HpyF3I	CTNAG	2 cut(s)	577, 897
HpySE526I	ACGT	1 cut(s)	731
Hsp92II	CATG	7 cut(s)	35, 193, 199, 205, 290, 598, 805
KpnI	GGTACC	1 cut(s)	275
LmnI	GCTCC	3 cut(s)	86, 322, 586
Lsp1109I	GCAGC	2 cut(s)	111, 586
LweI	GCATC	2 cut(s)	606, 628
MaeII	ACGT	1 cut(s)	731
MaeIII	GTNAC	1 cut(s)	738
MboII	GAAGA	2 cut(s)	512, 751
MluCI	AATT	5 cut(s)	124, 175, 222, 332, 353
MlyI	GAGTC	1 cut(s)	20
Mph1103I	ATGCAT	2 cut(s)	621, 854
MseI	TTAA	4 cut(s)	705, 753, 782, 821
MslI	CAYNNNNRTG	2 cut(s)	194, 200
MspA1I	CMGCKG	1 cut(s)	841
MspI	CCGG	5 cut(s)	21, 61, 143, 234, 275
MspR9I	CCNGG	6 cut(s)	22, 143, 234, 235, 276, 816
MvaI	CCWGG	1 cut(s)	816
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	825
NciI	CCSGG	5 cut(s)	22, 143, 234, 235, 276
NlaIII	CATG	7 cut(s)	35, 193, 199, 205, 290, 598, 805
NlaIV	GGNNCC	1 cut(s)	273
NsiI	ATGCAT	2 cut(s)	621, 854
PfeI	GAWTC	3 cut(s)	112, 266, 551
PkrI	GCNGC	3 cut(s)	101, 424, 601
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Ppu21I	YACGTR	1 cut(s)	732
PpuMI	RGGWCCY	1 cut(s)	862
Psp5II	RGGWCCY	1 cut(s)	862
Psp6I	CCWGG	1 cut(s)	814
PspGI	CCWGG	1 cut(s)	814
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	4 cut(s)	277, 343, 685, 862
PspPPI	RGGWCCY	1 cut(s)	862
RsaI	GTAC	5 cut(s)	136, 273, 373, 410, 734
RsaNI	GTAC	5 cut(s)	135, 272, 372, 409, 733
RseI	CAYNNNNRTG	2 cut(s)	194, 200
SaqAI	TTAA	4 cut(s)	705, 753, 782, 821
SatI	GCNGC	3 cut(s)	100, 423, 600
Sau96I	GGNCC	4 cut(s)	277, 343, 685, 862
ScaI	AGTACT	2 cut(s)	136, 373
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	6 cut(s)	22, 143, 234, 235, 276, 816
SfaNI	GCATC	2 cut(s)	606, 628
SfcI	CTRYAG	1 cut(s)	510
SinI	GGWCC	2 cut(s)	685, 862
SmaI	CCCGGG	1 cut(s)	235
SmiMI	CAYNNNNRTG	2 cut(s)	194, 200
SmlI	CTYRAG	3 cut(s)	281, 460, 696
SmoI	CTYRAG	3 cut(s)	281, 460, 696
SnaBI	TACGTA	1 cut(s)	732
Sse9I	AATT	5 cut(s)	124, 175, 222, 332, 353
SsiI	CCGC	2 cut(s)	422, 839
SspI	AATATT	1 cut(s)	751
StyD4I	CCNGG	6 cut(s)	20, 141, 232, 233, 274, 814
TaaI	ACNGT	2 cut(s)	215, 445
TaiI	ACGT	1 cut(s)	734
TaqI	TCGA	1 cut(s)	14
TasI	AATT	5 cut(s)	124, 175, 222, 332, 353
TatI	WGTACW	2 cut(s)	134, 371
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	3 cut(s)	112, 266, 551
Tru1I	TTAA	4 cut(s)	705, 753, 782, 821
Tru9I	TTAA	4 cut(s)	705, 753, 782, 821
TscAI	CASTG	1 cut(s)	653
TseI	GCWGC	2 cut(s)	99, 599
TspDTI	ATGAA	4 cut(s)	231, 378, 405, 641
TspMI	CCCGGG	1 cut(s)	233
TspRI	CASTG	1 cut(s)	653
VpaK11BI	GGWCC	2 cut(s)	685, 862
XapI	RAATTY	2 cut(s)	175, 353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XmaI	CCCGGG	1 cut(s)	233
ZrmI	AGTACT	2 cut(s)	136, 373
Zsp2I	ATGCAT	2 cut(s)	621, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.