RLG00000033584

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000341
Physical Location & Seq
Reverse (-)
29298237 .. 29299391
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033584

Sequence Viewer

Length: 1029 bp
ATGGCTTTTCAACGCATTAACTTTGTGTGTATTGCCATATTCATTACCTTGGGGACTTTGGCTTCTCATGCCACATCCCGTTCATTGTATGAAGCTTCCCTTGCTGAAAAGCATGAGCAATGGATGGCAAAGCACGGCCGCGTTTACCCAAATGCGGCAGAGAAGGAAAGGCGTTTGGGCATCTTCAAGAAGAATGTCGAATACGTGGACAAGTTCAACAATGAAGCGAATAAGACTTACAAGTTGAACATCAACAAGTTTTCTGATATGACCGACGAAGAATTCCGGAGATATCATACCGGATTCAAAATGCCCCCCAGCTTAACTTCAACGTCATCCAATTTTAGCTACCAAAGCTTGGCTGCTACTGATATTCCAACTAGCGTGGACTGGAGGGAACAACAAGCTGTCACCCCCATAAAGGATCAAAAAGCATGCGGTGCTTGCTGGGCATTTACAGTAGCAGCAGCTGTGGAAGGGCTAACCAAAATCAAAACCGGCCAATTGATCTCACTCTCTGAGCAGCAACTTGTGGACTGCGATCATCAGAACAATGGGTGCGGCGGTGGTACCTTAGAATCCGCCTATTCCTACGTAGTACAAAACGGAGGACTCGCTCGTGAAGAAACTTACCCGTACCAGGCAACAGACATGGGAACATGCGATACTAACAAGGAAAGTGAGCATGCGGCACAGATCACTGGCTATGAAAGCGTCCCTTCCAGTAGTGAAAACGATCTACAGAAGGCTGTGGCCATGCAACCAGTATCGGTTGGCATTTCTGCTTATGGACAAGATTTTAAGATGTACGACAGTGGGGTGTTCTCCGGCGAATGTGGGACGGACCTCGACCACGCCATCACGGCCATTGGCTATGGGACGACTGCAGATGGAATCCCCTATTGGTTAATGAAGAACTCATGGGGGGAGGATTGGGGTGAAAGTGGGTATATGAGAATTCGTAGAAACAGTGATGGCCCAGAGGGTACGTGCGGCCTTGCTATGCATCCCGTCTATCCGACTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

343

Amino Acids

37.7

Weight (kDa)

5.25

Isoelectric Point (pI)

40.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 38 - 95 5.8e-20 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 125 - 341 9.1e-80 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 569
AccB1I GGYRCC 1 cut(s) 569
AccB7I CCANNNNNTGG 1 cut(s) 358
AccII CGCG 1 cut(s) 141
AccIII TCCGGA 1 cut(s) 285
AciI CCGC 8 cut(s) 139, 155, 438, 561, 564, 582, 689, 993
AclWI GGATC 1 cut(s) 432
AcoI YGGCCR 4 cut(s) 136, 499, 753, 864
AcsI RAATTY 2 cut(s) 281, 957
AfaI GTAC 5 cut(s) 571, 600, 638, 809, 988
AfiI CCNNNNNNNGG 4 cut(s) 154, 358, 421, 640
AgsI TTSAA 6 cut(s) 11, 187, 217, 247, 307, 330
AjnI CCWGG 1 cut(s) 639
AjuI GAANNNNNNNTTGG 2 cut(s) 886, 918
AluBI AGCT 6 cut(s) 95, 321, 348, 357, 407, 470
AluI AGCT 6 cut(s) 95, 321, 348, 357, 407, 470
AlwI GGATC 1 cut(s) 432
AlwNI CAGNNNCTG 1 cut(s) 470
Aor13HI TCCGGA 1 cut(s) 285
AoxI GGCC 6 cut(s) 136, 499, 753, 864, 976, 994
ApeKI GCWGC 4 cut(s) 362, 464, 467, 523
ApoI RAATTY 2 cut(s) 281, 957
Asp718I GGTACC 1 cut(s) 569
AspS9I GGNCC 2 cut(s) 844, 977
AsuHPI GGTGA 2 cut(s) 403, 950
AvaII GGWCC 1 cut(s) 844
BalI TGGCCA 1 cut(s) 755
BanI GGYRCC 1 cut(s) 569
BauI CACGAG 1 cut(s) 618
BbvI GCAGC 4 cut(s) 349, 476, 479, 535
BccI CCATC 4 cut(s) 118, 866, 884, 968
BceAI ACGGC 2 cut(s) 151, 879
BciT130I CCWGG 1 cut(s) 641
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 2 cut(s) 740, 885
BglI GCCNNNNNGGC 1 cut(s) 863
BisI GCNGC 9 cut(s) 139, 156, 363, 465, 468, 524, 562, 690, 994
BlsI GCNGC 9 cut(s) 140, 157, 364, 466, 469, 525, 563, 691, 995
Bme1390I CCNGG 1 cut(s) 641
Bme18I GGWCC 1 cut(s) 844
BmgT120I GGNCC 2 cut(s) 844, 977
BmiI GGNNCC 1 cut(s) 571
BmrFI CCNGG 1 cut(s) 641
BmsI GCATC 2 cut(s) 189, 1015
BpmI CTGGAG 1 cut(s) 412
BsaAI YACGTR 3 cut(s) 205, 595, 990
BsaJI CCNNGG 1 cut(s) 48
BsaWI WCCGGW 2 cut(s) 285, 299
Bsc4I CCNNNNNNNGG 4 cut(s) 154, 358, 421, 640
Bse118I RCCGGY 1 cut(s) 497
Bse1I ACTGG 4 cut(s) 395, 706, 723, 764
Bse3DI GCAATG 1 cut(s) 125
BseAI TCCGGA 1 cut(s) 285
BseBI CCWGG 1 cut(s) 641
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 4 cut(s) 74, 129, 335, 1006
BseLI CCNNNNNNNGG 4 cut(s) 154, 358, 421, 640
BseMI GCAATG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 510
BseNI ACTGG 4 cut(s) 395, 706, 723, 764
BseX3I CGGCCG 1 cut(s) 136
BseXI GCAGC 4 cut(s) 349, 476, 479, 535
BseYI CCCAGC 2 cut(s) 317, 447
Bsh1236I CGCG 1 cut(s) 141
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 6 cut(s) 138, 501, 755, 866, 978, 996
BshNI GGYRCC 1 cut(s) 569
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 4 cut(s) 286, 300, 498, 828
BslFI GGGAC 4 cut(s) 67, 701, 853, 892
BslI CCNNNNNNNGG 4 cut(s) 154, 358, 421, 640
BsmFI GGGAC 4 cut(s) 67, 701, 853, 892
BsnI GGCC 6 cut(s) 138, 501, 755, 866, 978, 996
Bsp13I TCCGGA 1 cut(s) 285
Bsp143I GATC 5 cut(s) 424, 507, 541, 696, 736
BspACI CCGC 8 cut(s) 139, 155, 438, 561, 564, 582, 689, 993
BspANI GGCC 6 cut(s) 138, 501, 755, 866, 978, 996
BspCNI CTCAG 1 cut(s) 511
BspEI TCCGGA 1 cut(s) 285
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 571
BspMAI CTGCAG 1 cut(s) 889
BspPI GGATC 1 cut(s) 432
BspT107I GGYRCC 1 cut(s) 569
BsrDI GCAATG 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 497
BsrI ACTGG 4 cut(s) 395, 706, 723, 764
BssAI RCCGGY 1 cut(s) 497
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 5 cut(s) 424, 507, 541, 696, 736
BssSI CACGAG 1 cut(s) 618
BssT1I CCWWGG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 618
Bst2UI CCWGG 1 cut(s) 641
Bst4CI ACNGT 3 cut(s) 460, 815, 971
BstAPI GCANNNNNTGC 1 cut(s) 440
BstBAI YACGTR 3 cut(s) 205, 595, 990
BstC8I GCNNGC 3 cut(s) 436, 445, 687
BstDEI CTNAG 2 cut(s) 519, 574
BstF5I GGATG 4 cut(s) 74, 129, 335, 1006
BstFNI CGCG 1 cut(s) 141
BstKTI GATC 5 cut(s) 427, 510, 544, 699, 739
BstMBI GATC 5 cut(s) 424, 507, 541, 696, 736
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 8 cut(s) 68, 101, 354, 440, 444, 449, 711, 863
BstNI CCWGG 1 cut(s) 641
BstNSI RCATGY 3 cut(s) 438, 663, 689
BstSCI CCNGG 1 cut(s) 639
BstSFI CTRYAG 2 cut(s) 740, 885
BstSNI TACGTA 1 cut(s) 595
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 4 cut(s) 349, 476, 479, 535
BstZI CGGCCG 1 cut(s) 136
BsuRI GGCC 6 cut(s) 138, 501, 755, 866, 978, 996
BtsCI GGATG 4 cut(s) 74, 129, 335, 1006
BtsIMutI CAGTG 3 cut(s) 699, 820, 976
Cac8I GCNNGC 3 cut(s) 436, 445, 687
CaiI CAGNNNCTG 1 cut(s) 470
Cfr10I RCCGGY 1 cut(s) 497
Cfr13I GGNCC 2 cut(s) 844, 977
CseI GACGC 1 cut(s) 703
Csp6I GTAC 5 cut(s) 570, 599, 637, 808, 987
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
CviAII CATG 8 cut(s) 68, 113, 435, 652, 660, 686, 757, 921
CviQI GTAC 5 cut(s) 570, 599, 637, 808, 987
DdeI CTNAG 2 cut(s) 519, 574
DpnI GATC 5 cut(s) 426, 509, 543, 698, 738
DpnII GATC 5 cut(s) 424, 507, 541, 696, 736
EaeI YGGCCR 4 cut(s) 136, 499, 753, 864
EagI CGGCCG 1 cut(s) 136
EciI GGCGGA 1 cut(s) 571
EclXI CGGCCG 1 cut(s) 136
Eco105I TACGTA 1 cut(s) 595
Eco130I CCWWGG 1 cut(s) 48
Eco32I GATATC 1 cut(s) 293
Eco47I GGWCC 1 cut(s) 844
Eco52I CGGCCG 1 cut(s) 136
EcoRI GAATTC 2 cut(s) 281, 957
EcoRII CCWGG 1 cut(s) 639
EcoRV GATATC 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 1008
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 8 cut(s) 71, 116, 438, 655, 663, 689, 760, 924
FalI AAGNNNNNCTT 4 cut(s) 84, 116, 703, 735
FaqI GGGAC 4 cut(s) 67, 701, 853, 892
FatI CATG 8 cut(s) 67, 112, 434, 651, 659, 685, 756, 920
Fnu4HI GCNGC 9 cut(s) 139, 156, 363, 465, 468, 524, 562, 690, 994
FokI GGATG 4 cut(s) 61, 136, 322, 993
Fsp4HI GCNGC 9 cut(s) 139, 156, 363, 465, 468, 524, 562, 690, 994
FspBI CTAG 1 cut(s) 381
GluI GCNGC 9 cut(s) 139, 156, 363, 465, 468, 524, 562, 690, 994
GsaI CCCAGC 2 cut(s) 321, 451
GsuI CTGGAG 1 cut(s) 412
HaeIII GGCC 6 cut(s) 138, 501, 755, 866, 978, 996
HapII CCGG 4 cut(s) 286, 300, 498, 828
HgaI GACGC 1 cut(s) 703
Hin1II CATG 8 cut(s) 71, 116, 438, 655, 663, 689, 760, 924
HindIII AAGCTT 2 cut(s) 93, 355
HinfI GANTC 4 cut(s) 303, 578, 612, 894
HpaII CCGG 4 cut(s) 286, 300, 498, 828
HphI GGTGA 2 cut(s) 403, 950
Hpy166II GTNNAC 4 cut(s) 145, 208, 388, 535
Hpy188I TCNGA 4 cut(s) 265, 520, 549, 1020
Hpy188III TCNNGA 3 cut(s) 187, 286, 620
Hpy8I GTNNAC 4 cut(s) 145, 208, 388, 535
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 4 cut(s) 157, 470, 729, 739
HpyCH4III ACNGT 3 cut(s) 460, 815, 971
HpyCH4IV ACGT 4 cut(s) 204, 332, 594, 989
HpyCH4V TGCA 3 cut(s) 760, 887, 1006
HpyF10VI GCNNNNNNNGC 8 cut(s) 68, 101, 354, 440, 444, 449, 711, 863
HpyF3I CTNAG 2 cut(s) 519, 574
HpySE526I ACGT 4 cut(s) 204, 332, 594, 989
Hsp92II CATG 8 cut(s) 71, 116, 438, 655, 663, 689, 760, 924
Kpn2I TCCGGA 1 cut(s) 285
KpnI GGTACC 1 cut(s) 573
Kzo9I GATC 5 cut(s) 424, 507, 541, 696, 736
Lsp1109I GCAGC 4 cut(s) 349, 476, 479, 535
LweI GCATC 2 cut(s) 189, 1015
MaeI CTAG 1 cut(s) 381
MaeII ACGT 4 cut(s) 204, 332, 594, 989
MaeIII GTNAC 1 cut(s) 409
MalI GATC 5 cut(s) 426, 509, 543, 698, 738
MboI GATC 5 cut(s) 424, 507, 541, 696, 736
MboII GAAGA 5 cut(s) 175, 202, 290, 635, 925
MfeI CAATTG 1 cut(s) 503
MlsI TGGCCA 1 cut(s) 755
MluCI AATT 4 cut(s) 281, 340, 503, 957
MluNI TGGCCA 1 cut(s) 755
MlyI GAGTC 1 cut(s) 606
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 5 cut(s) 387, 602, 857, 922, 976
Mox20I TGGCCA 1 cut(s) 755
Mph1103I ATGCAT 1 cut(s) 1008
MroI TCCGGA 1 cut(s) 285
MscI TGGCCA 1 cut(s) 755
MseI TTAA 4 cut(s) 18, 323, 801, 908
Msp20I TGGCCA 1 cut(s) 755
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 4 cut(s) 286, 300, 498, 828
MspR9I CCNGG 1 cut(s) 641
MunI CAATTG 1 cut(s) 503
MvaI CCWGG 1 cut(s) 641
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 8 cut(s) 68, 101, 354, 440, 444, 449, 711, 863
NdeII GATC 5 cut(s) 424, 507, 541, 696, 736
NlaIII CATG 8 cut(s) 71, 116, 438, 655, 663, 689, 760, 924
NlaIV GGNNCC 1 cut(s) 571
NmuCI GTSAC 1 cut(s) 409
NsiI ATGCAT 1 cut(s) 1008
NspI RCATGY 3 cut(s) 438, 663, 689
PaeI GCATGC 2 cut(s) 438, 689
PfeI GAWTC 3 cut(s) 303, 578, 894
PflMI CCANNNNNTGG 1 cut(s) 358
PkrI GCNGC 9 cut(s) 140, 157, 364, 466, 469, 525, 563, 691, 995
PleI GAGTC 1 cut(s) 606
PpsI GAGTC 1 cut(s) 606
Ppu21I YACGTR 3 cut(s) 205, 595, 990
Psp6I CCWGG 1 cut(s) 639
PspFI CCCAGC 2 cut(s) 317, 447
PspGI CCWGG 1 cut(s) 639
PspN4I GGNNCC 1 cut(s) 571
PspPI GGNCC 2 cut(s) 844, 977
PsrI GAACNNNNNNTAC 2 cut(s) 649, 681
PstI CTGCAG 1 cut(s) 889
PstNI CAGNNNCTG 1 cut(s) 470
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 5 cut(s) 571, 600, 638, 809, 988
RsaNI GTAC 5 cut(s) 570, 599, 637, 808, 987
SaqAI TTAA 4 cut(s) 18, 323, 801, 908
SatI GCNGC 9 cut(s) 139, 156, 363, 465, 468, 524, 562, 690, 994
Sau3AI GATC 5 cut(s) 424, 507, 541, 696, 736
Sau96I GGNCC 2 cut(s) 844, 977
SchI GAGTC 1 cut(s) 606
ScrFI CCNGG 1 cut(s) 641
SfaNI GCATC 2 cut(s) 189, 1015
SfcI CTRYAG 2 cut(s) 740, 885
SinI GGWCC 1 cut(s) 844
SnaBI TACGTA 1 cut(s) 595
SphI GCATGC 2 cut(s) 438, 689
Sse9I AATT 4 cut(s) 281, 340, 503, 957
SsiI CCGC 8 cut(s) 139, 155, 438, 561, 564, 582, 689, 993
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 639
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 3 cut(s) 460, 815, 971
TaiI ACGT 4 cut(s) 207, 335, 597, 992
TaqI TCGA 2 cut(s) 198, 849
TaqII GACCGA 1 cut(s) 287
TasI AATT 4 cut(s) 281, 340, 503, 957
TatI WGTACW 1 cut(s) 598
TauI GCSGC 5 cut(s) 141, 158, 564, 692, 996
TfiI GAWTC 3 cut(s) 303, 578, 894
Tru1I TTAA 4 cut(s) 18, 323, 801, 908
Tru9I TTAA 4 cut(s) 18, 323, 801, 908
TscAI CASTG 3 cut(s) 706, 820, 976
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 4 cut(s) 362, 464, 467, 523
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 6 cut(s) 31, 72, 105, 237, 723, 926
TspGWI ACGGA 2 cut(s) 621, 857
TspRI CASTG 3 cut(s) 706, 820, 976
Van91I CCANNNNNTGG 1 cut(s) 358
VpaK11BI GGWCC 1 cut(s) 844
XapI RAATTY 2 cut(s) 281, 957
XceI RCATGY 3 cut(s) 438, 663, 689
XspI CTAG 1 cut(s) 381
Zsp2I ATGCAT 1 cut(s) 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.