Rorug05G0385000

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000341
Physical Location & Seq
Forward (+)
52286908 .. 52290103
3196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0385000.1

Sequence Viewer

Length: 594 bp
ATGGCGGTTTCTTCAATCTCCGCAACCCTAATTCCTTCTCTTCCGCTCTCCAATTCTTCTCCATTTCCTTCCTCTAAAGCCAAGCTCGCTTCTTTCTCTTTGCCCGCTTCCCACAATGCCGCAAAGCTTCAAGCTTTGAGACCCTCACAGTCCTCATCCACTAGGGTTTATGCTGCTCCTGAAGTCCTCGATAGCCCAGTTCCGCCTCCAGAAATCCTTGAAGGGCCCAATTCCGACGAGACTCCGAGCACTTCATCACTCAGCATTGGCGGGGATGATAAGATAACACCAAAGCAGAAGATTAGGATTAAGCTTAGATCATACTTTGTGCCTCTGATAGAGGATTCTTGCAAGCAGATAATGGATGCTGCAAGGAACACAAATGCAAAGACTATGGGTCCTGTGCCCTTACCAACCAAAAAACGGATCTACTGTGTTCTGAAATCACCCCATGTCCACAAGGATGCAAGGTTCCATTTTGAGATCCGTACCCACCAGCGACTTATTGACATTCTTTACCCAACAGCCCAAACAATCGATTCCTTGATGCAACTTGACCTTCCTGCTGGAGTTGATGTTGAGGTCAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

197

Amino Acids

21.44

Weight (kDa)

9.25

Isoelectric Point (pI)

67.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S10 PF00338 102 - 196 1.4e-33 Ribosomal protein S10p/S20e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 46
AciI CCGC 7 cut(s) 5, 21, 44, 105, 120, 203, 270
AclWI GGATC 2 cut(s) 434, 478
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 1 cut(s) 490
AfiI CCNNNNNNNGG 1 cut(s) 423
AgsI TTSAA 3 cut(s) 15, 131, 221
AhdI GACNNNNNGTC 1 cut(s) 396
AloI GAACNNNNNNTCC 2 cut(s) 455, 487
AluBI AGCT 5 cut(s) 85, 127, 134, 313, 589
AluI AGCT 5 cut(s) 85, 127, 134, 313, 589
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 2 cut(s) 133, 233
AlwI GGATC 2 cut(s) 434, 478
AoxI GGCC 1 cut(s) 224
ApaI GGGCCC 1 cut(s) 228
ApeKI GCWGC 2 cut(s) 173, 368
AspS9I GGNCC 3 cut(s) 224, 225, 398
AsuHPI GGTGA 1 cut(s) 438
AvaII GGWCC 1 cut(s) 398
BaeGI GKGCMC 2 cut(s) 228, 408
BanII GRGCYC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 2 cut(s) 160, 355
BcoDI GTCTC 2 cut(s) 133, 233
BfaI CTAG 1 cut(s) 162
BisI GCNGC 3 cut(s) 120, 174, 369
BlsI GCNGC 3 cut(s) 121, 175, 370
Bme18I GGWCC 1 cut(s) 398
BmeRI GACNNNNNGTC 1 cut(s) 396
BmgT120I GGNCC 3 cut(s) 224, 225, 398
BmiI GGNNCC 3 cut(s) 226, 399, 473
BmrI ACTGGG 1 cut(s) 191
BmsI GCATC 3 cut(s) 355, 454, 537
BmuI ACTGGG 1 cut(s) 191
BpmI CTGGAG 2 cut(s) 192, 588
Bsa29I ATCGAT 1 cut(s) 537
BsaI GGTCTC 1 cut(s) 133
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 423
Bse1I ACTGG 1 cut(s) 197
BseCI ATCGAT 1 cut(s) 537
BseGI GGATG 4 cut(s) 155, 280, 370, 469
BseLI CCNNNNNNNGG 1 cut(s) 423
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 197
BseSI GKGCMC 2 cut(s) 228, 408
BseXI GCAGC 2 cut(s) 160, 355
BshFI GGCC 1 cut(s) 226
BshVI ATCGAT 1 cut(s) 537
BsiHKAI GWGCWC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 423
BsmAI GTCTC 2 cut(s) 133, 233
BsnI GGCC 1 cut(s) 226
Bso31I GGTCTC 1 cut(s) 133
Bsp120I GGGCCC 1 cut(s) 224
Bsp1286I GDGCHC 3 cut(s) 228, 251, 408
Bsp143I GATC 3 cut(s) 317, 426, 483
BspACI CCGC 7 cut(s) 5, 21, 44, 105, 120, 203, 270
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 273
BspDI ATCGAT 1 cut(s) 537
BspLI GGNNCC 3 cut(s) 226, 399, 473
BspPI GGATC 2 cut(s) 434, 478
BspTNI GGTCTC 1 cut(s) 133
BsrBI CCGCTC 1 cut(s) 46
BsrI ACTGG 1 cut(s) 197
BssMI GATC 3 cut(s) 317, 426, 483
Bst4CI ACNGT 2 cut(s) 150, 434
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 3 cut(s) 87, 105, 353
BstDEI CTNAG 2 cut(s) 260, 314
BstF5I GGATG 4 cut(s) 155, 280, 370, 469
BstKTI GATC 3 cut(s) 320, 429, 486
BstMAI GTCTC 2 cut(s) 133, 233
BstMBI GATC 3 cut(s) 317, 426, 483
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstSLI GKGCMC 2 cut(s) 228, 408
BstV1I GCAGC 2 cut(s) 160, 355
BstX2I RGATCY 2 cut(s) 426, 483
BstYI RGATCY 2 cut(s) 426, 483
Bsu15I ATCGAT 1 cut(s) 537
BsuRI GGCC 1 cut(s) 226
BsuTUI ATCGAT 1 cut(s) 537
BtsCI GGATG 4 cut(s) 155, 280, 370, 469
Cac8I GCNNGC 3 cut(s) 87, 105, 353
Cfr13I GGNCC 3 cut(s) 224, 225, 398
ClaI ATCGAT 1 cut(s) 537
Csp6I GTAC 1 cut(s) 489
CviAII CATG 1 cut(s) 452
CviJI RGCY 9 cut(s) 80, 85, 127, 134, 195, 226, 313, 527, 589
CviKI_1 RGCY 9 cut(s) 80, 85, 127, 134, 195, 226, 313, 527, 589
CviQI GTAC 1 cut(s) 489
DdeI CTNAG 2 cut(s) 260, 314
DpnI GATC 3 cut(s) 319, 428, 485
DpnII GATC 3 cut(s) 317, 426, 483
DriI GACNNNNNGTC 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 45
Eam1105I GACNNNNNGTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 45
EciI GGCGGA 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 201
EcoO109I RGGNCCY 2 cut(s) 224, 398
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 1 cut(s) 455
FaiI YATR 4 cut(s) 171, 322, 395, 453
FatI CATG 1 cut(s) 451
FauI CCCGC 2 cut(s) 112, 263
Fnu4HI GCNGC 3 cut(s) 120, 174, 369
FokI GGATG 4 cut(s) 142, 287, 377, 476
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 3 cut(s) 120, 174, 369
FspBI CTAG 1 cut(s) 162
GluI GCNGC 3 cut(s) 120, 174, 369
GsuI CTGGAG 2 cut(s) 192, 588
HaeIII GGCC 1 cut(s) 226
Hin1II CATG 1 cut(s) 455
HindIII AAGCTT 4 cut(s) 125, 132, 311, 587
HinfI GANTC 3 cut(s) 241, 344, 539
HphI GGTGA 1 cut(s) 438
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 4 cut(s) 235, 246, 336, 441
Hpy188III TCNNGA 2 cut(s) 179, 209
Hpy8I GTNNAC 1 cut(s) 457
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 4 cut(s) 45, 78, 215, 569
HpyCH4III ACNGT 2 cut(s) 150, 434
HpyCH4V TGCA 5 cut(s) 351, 371, 386, 467, 550
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 260, 314
Hsp92II CATG 1 cut(s) 455
Kzo9I GATC 3 cut(s) 317, 426, 483
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 7 cut(s) 192, 210, 222, 414, 509, 552, 576
Lsp1109I GCAGC 2 cut(s) 160, 355
LweI GCATC 3 cut(s) 355, 454, 537
MaeI CTAG 1 cut(s) 162
MalI GATC 3 cut(s) 319, 428, 485
MbiI CCGCTC 1 cut(s) 46
MboI GATC 3 cut(s) 317, 426, 483
MboII GAAGA 4 cut(s) 3, 32, 48, 310
MflI RGATCY 2 cut(s) 426, 483
MhlI GDGCHC 3 cut(s) 228, 251, 408
MluCI AATT 3 cut(s) 30, 52, 229
MlyI GAGTC 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 8 cut(s) 82, 154, 163, 197, 216, 334, 342, 574
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 462
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 3 cut(s) 317, 426, 483
NlaIII CATG 1 cut(s) 455
NlaIV GGNNCC 3 cut(s) 226, 399, 473
PfeI GAWTC 2 cut(s) 344, 539
PkrI GCNGC 3 cut(s) 121, 175, 370
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 398
Psp5II RGGWCCY 1 cut(s) 398
PspN4I GGNNCC 3 cut(s) 226, 399, 473
PspOMI GGGCCC 1 cut(s) 224
PspPI GGNCC 3 cut(s) 224, 225, 398
PspPPI RGGWCCY 1 cut(s) 398
PsuI RGATCY 2 cut(s) 426, 483
RsaI GTAC 1 cut(s) 490
RsaNI GTAC 1 cut(s) 489
RseI CAYNNNNRTG 1 cut(s) 462
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 3 cut(s) 120, 174, 369
Sau3AI GATC 3 cut(s) 317, 426, 483
Sau96I GGNCC 3 cut(s) 224, 225, 398
SchI GAGTC 1 cut(s) 235
SduI GDGCHC 3 cut(s) 228, 251, 408
SetI ASST 8 cut(s) 87, 129, 136, 315, 473, 561, 585, 591
SfaNI GCATC 3 cut(s) 355, 454, 537
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 462
Sse9I AATT 3 cut(s) 30, 52, 229
SsiI CCGC 7 cut(s) 5, 21, 44, 105, 120, 203, 270
SspMI CTAG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 150, 434
TaqI TCGA 2 cut(s) 189, 537
TasI AATT 3 cut(s) 30, 52, 229
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 2 cut(s) 344, 539
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseI GCWGC 2 cut(s) 173, 368
TspDTI ATGAA 1 cut(s) 243
TspGWI ACGGA 2 cut(s) 439, 476
VpaK11BI GGWCC 1 cut(s) 398
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.